View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6662_low_2 (Length: 343)
Name: NF6662_low_2
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6662_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 31 - 334
Target Start/End: Original strand, 35507307 - 35507610
Alignment:
| Q |
31 |
ctcattagcaatttgcacactgaattattattttaaaataccactggcttatatatcctaactattcgttataatccactaaaaatatatgtacaagtac |
130 |
Q |
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| T |
35507307 |
ctcattagcaatttgcacactgaattattattttaaaataccactggcttatatatcctaactattcgttataatccactaaaaagatatgtacaagtac |
35507406 |
T |
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| Q |
131 |
tatattttctggtccactccaatactatccattattatatgtagttgtttattttatgttaaactttaattagttcatcgatcagttccacctaattaac |
230 |
Q |
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| T |
35507407 |
tatattttctggtccactccaataccatccattcttatatgtagttgtttattttaagttaaactttaattagttcatcgatcagttccacctaattaac |
35507506 |
T |
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| Q |
231 |
caaatgttgtcactattaaaaataaaactaaattagagaagaaatttaaaggaaagttataaggtctatttctaattttgtcaataaatttaatgaagaa |
330 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35507507 |
caaatgttgtcactattaaaaataaaactaaattagagaagaaatttaaaggaaagttataaggtctatttctaattttgtcaataaatttaatgaagaa |
35507606 |
T |
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| Q |
331 |
taat |
334 |
Q |
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|||| |
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| T |
35507607 |
taat |
35507610 |
T |
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