View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6662_low_6 (Length: 284)
Name: NF6662_low_6
Description: NF6662
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6662_low_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 18 - 273
Target Start/End: Original strand, 28189641 - 28189894
Alignment:
| Q |
18 |
ttggttggtagtgatgttaaatcaagttatttaaaatgacatgacattgtatgtttaaaaatgtaacggtgcgtataattgaagtttattttagatatag |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
28189641 |
ttggttggtagtgatgttaaatcaagttatttaaaatgacatgaaattgtatgtataaaaatgtaacggtgcgtataattgaagttta-tttagatatag |
28189739 |
T |
|
| Q |
118 |
tctgatggttataaatccttttattttcaagagtattc-nnnnnnnnnnnnnnngtgtttgtcatatactgaagattttacttcaaatttaaaacaattt |
216 |
Q |
| |
|
| ||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28189740 |
tgtgatggttataaatccttttattttca--agtattcttttttttctttttttgtgtttgtcatatactgaagattttacttcaaatttaaaacaattt |
28189837 |
T |
|
| Q |
217 |
aagatatgtatattatagagtccaaaaaatatgagtcttaacattttagtggttcat |
273 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28189838 |
aagatatgtatattatagagtccaaaaaatatgagtcttaacattttagtggttcat |
28189894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 80
Target Start/End: Complemental strand, 19540747 - 19540683
Alignment:
| Q |
16 |
ggttggttggtagtgatgttaaatcaagttatttaaaatgacatgacattgtatgtttaaaaatg |
80 |
Q |
| |
|
||||||||||||||| | |||| ||| |||||||||||||| || ||||||||||||||||||| |
|
|
| T |
19540747 |
ggttggttggtagtggtattaagccaaattatttaaaatgacgtggcattgtatgtttaaaaatg |
19540683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 18476144 - 18476184
Alignment:
| Q |
16 |
ggttggttggtagtgatgttaaatcaagttatttaaaatga |
56 |
Q |
| |
|
||||||||||||||| ||||||| ||| ||||||||||||| |
|
|
| T |
18476144 |
ggttggttggtagtggtgttaaaccaaattatttaaaatga |
18476184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University