View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6663_high_7 (Length: 304)
Name: NF6663_high_7
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_high_7 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 289
Target Start/End: Original strand, 47391384 - 47391670
Alignment:
| Q |
1 |
tctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |
|
|
| T |
47391384 |
tctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttctgg-tctcctctctatccatccataatgttttgag |
47391482 |
T |
|
| Q |
101 |
ctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttgatatgcccaccccattctttccgctgcttggcctgtttttccaaatccttta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47391483 |
ctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttctgatatgcccaccc-attctttccgctgcttggcctgtttttccaaatccttta |
47391581 |
T |
|
| Q |
201 |
tctgatgaaatatactcactatcacctcatccttctgatcctcagccacaaactccaaattttcatcaagattcaagtcacgaaattta |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47391582 |
tctgatgaaatatactcactatcacctcatccttctgatcctcagccacaaactccaaattttcatcaagattcaagtcacgaaattta |
47391670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 289
Target Start/End: Complemental strand, 40624746 - 40624463
Alignment:
| Q |
1 |
tctccatctccgagagtctcttcatagttgtgtcctcaagtgcctgtttccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgag |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40624746 |
tctccatctccgagagtctcttcatggttgtatcctcaagtgcctgtttccctttcttcaatttctgggtctcctctctatccatccgtaatgttttgag |
40624647 |
T |
|
| Q |
101 |
ctcagtcaaatcactgcttagcttctttgcggcctgcaatgctttttgatatgcccaccccattctttccgctgcttggcctgtttttccaaatccttta |
200 |
Q |
| |
|
||| ||||||||||||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40624646 |
ctcggtcaaatcactgcttagcttcttcgcggcctgcaatgctttctgata-----agcccattctttccgctccttggcctgtttttccaaatccttta |
40624552 |
T |
|
| Q |
201 |
tctgatgaaatatactcactatcacctcatccttctgatcctcagccacaaactccaaattttcatcaagattcaagtcacgaaattta |
289 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40624551 |
tctgatgaaatatactcactatcacttcatccttctgatcctcagccacaaactccaaattttcatcaagattcaagtcacgaaattta |
40624463 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University