View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6663_high_8 (Length: 255)
Name: NF6663_high_8
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 20 - 248
Target Start/End: Complemental strand, 21941968 - 21941740
Alignment:
| Q |
20 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
119 |
Q |
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| T |
21941968 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
21941869 |
T |
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| Q |
120 |
tttgacatcaatggatttcaagtttcgcaagtaaataggaatgatcttgataattgcaatgcagttgacttatctcaaatgtctgaaacacttacaaaat |
219 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |
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| T |
21941868 |
tttgacattaatggatttcaagtttcgcaagtaaataggaatgatcttgataattgcaatgcagttgacttatttcaaatgtctgaaacacttgcaaaat |
21941769 |
T |
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| Q |
220 |
gtgcaagagctgtgattgaacctttgctt |
248 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
21941768 |
gtgcaagagctgtgattgaacctttgctt |
21941740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 20117882 - 20117990
Alignment:
| Q |
20 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
119 |
Q |
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||||||||||||||||||||||| |||||||||||||| | |||| ||||| |||||||||| ||||| | ||| |||||||||||||||||| ||| |
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| T |
20117882 |
gcagggaatcatagaagaagagaccctcaatactttcaatctccctaactattatccatctccaactgaagtgaaattggaagttctaactgaagggtca |
20117981 |
T |
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| Q |
120 |
tttgacatc |
128 |
Q |
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|||| |||| |
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| T |
20117982 |
tttgtcatc |
20117990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 123
Target Start/End: Complemental strand, 32627131 - 32627030
Alignment:
| Q |
22 |
agggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatcatt |
121 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||| |||||||||||||||| | ||| |||||||| | ||||||| |||||| |
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| T |
32627131 |
agggaatcataaaagaagagaaactcaatactttcaacattcctatatattatccatctccatctgaagtgaaattggaagttattactgaaggatcatt |
32627032 |
T |
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| Q |
122 |
tg |
123 |
Q |
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|| |
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| T |
32627031 |
tg |
32627030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 20 - 190
Target Start/End: Complemental strand, 27736162 - 27735992
Alignment:
| Q |
20 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctgaaataaaagtggaagttctaactgaagaatca |
119 |
Q |
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|||||||||||| | ||||||||| |||||||||||||||| |||| |||| |||||||||||||||| | || |||||||||| | ||||| |||| |
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| T |
27736162 |
gcagggaatcattaacgaagagaaaatcaatactttcaacatccctaattattatccatctccatctgaagtgaagttggaagttctcaatgaaggatca |
27736063 |
T |
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| Q |
120 |
tttgacatcaatggatttcaagtttcgcaagtaaataggaatgatcttgataattgcaatgcagttgactt |
190 |
Q |
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|||| ||||||| ||| | ||||| |||| ||| |||||| ||||||| |||| ||||| ||||||| |
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| T |
27736062 |
tttgtcatcaataaattggaggtttctgaagttaattggaatgctcttgatgattgtaatgcctttgactt |
27735992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 88
Target Start/End: Complemental strand, 5810829 - 5810761
Alignment:
| Q |
20 |
gcagggaatcatagaagaagagaaactcaatactttcaacattcctatctattttccatctccatctga |
88 |
Q |
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|||||||||||| || ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||| |
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| T |
5810829 |
gcagggaatcattgaccaagagaaactcaatagtttcaacatccctaactattatccatctccatctga |
5810761 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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