View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6663_high_9 (Length: 239)
Name: NF6663_high_9
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_high_9 |
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Alignment Details
Target: chr8 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 219
Target Start/End: Complemental strand, 40237128 - 40236928
Alignment:
| Q |
18 |
atttctgtctcaatatattcgtgtgggaatcaaaaaggtagnnnnnnnnnnngaaggaataggtgaaaactaaccgaagcaccttactcgattgaaatac |
117 |
Q |
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| T |
40237128 |
atttctgtctcaatatattcatgtgggaatcaaaagggtagtttttttttta-aaggaataggtgaaaactaaccgaagcaccttactcaattgaaatac |
40237030 |
T |
|
| Q |
118 |
gatctaataaatttcattcctaaaacttctttccggtcttttatcagcaccgtaatgtttgtggaactgcaaagaattttttgagtttacaatagttccg |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
40237029 |
gatctaataaatttcattcctaaaacttctttccggtcttttatcagcaccgtaatgtttgtggaactgcaaagaattttttgagtttacaatagctccg |
40236930 |
T |
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| Q |
218 |
gc |
219 |
Q |
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|| |
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| T |
40236929 |
gc |
40236928 |
T |
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