View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6663_low_1 (Length: 573)

Name: NF6663_low_1
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6663_low_1
NF6663_low_1
[»] chr1 (4 HSPs)
chr1 (20-573)||(52092719-52093272)
chr1 (21-573)||(52082523-52083075)
chr1 (405-513)||(19468488-19468596)
chr1 (28-69)||(19468117-19468158)
[»] chr8 (6 HSPs)
chr8 (418-514)||(27922509-27922605)
chr8 (418-508)||(17636403-17636493)
chr8 (418-508)||(18315275-18315365)
chr8 (418-514)||(32151302-32151398)
chr8 (420-514)||(17628018-17628112)
chr8 (420-460)||(21235613-21235653)
[»] chr5 (4 HSPs)
chr5 (405-510)||(41889543-41889648)
chr5 (418-514)||(32267476-32267572)
chr5 (423-513)||(41901542-41901632)
chr5 (441-514)||(20478107-20478180)
[»] chr4 (23 HSPs)
chr4 (337-514)||(1548344-1548522)
chr4 (418-514)||(8187093-8187189)
chr4 (418-511)||(7307864-7307957)
chr4 (418-514)||(546914-547010)
chr4 (418-514)||(1524488-1524584)
chr4 (405-508)||(532196-532299)
chr4 (328-387)||(1754611-1754670)
chr4 (420-514)||(553480-553574)
chr4 (417-514)||(3438567-3438663)
chr4 (28-69)||(55908337-55908378)
chr4 (439-503)||(640927-640991)
chr4 (418-514)||(1513409-1513505)
chr4 (418-514)||(8184032-8184128)
chr4 (437-472)||(1754554-1754589)
chr4 (337-387)||(1552685-1552735)
chr4 (420-514)||(1552771-1552865)
chr4 (418-484)||(12121459-12121525)
chr4 (445-514)||(558499-558568)
chr4 (405-514)||(55908717-55908826)
chr4 (168-228)||(547194-547254)
chr4 (446-514)||(1508033-1508101)
chr4 (418-514)||(1537769-1537865)
chr4 (29-69)||(53761398-53761438)
[»] chr3 (13 HSPs)
chr3 (332-514)||(51113694-51113879)
chr3 (418-514)||(51120895-51120991)
chr3 (422-569)||(33714861-33715008)
chr3 (431-569)||(33708989-33709127)
chr3 (441-514)||(13470757-13470830)
chr3 (433-500)||(37580837-37580904)
chr3 (195-253)||(27005557-27005615)
chr3 (194-228)||(33396786-33396820)
chr3 (194-228)||(33708804-33708838)
chr3 (194-228)||(37580607-37580641)
chr3 (433-503)||(37587571-37587641)
chr3 (195-228)||(33093715-33093748)
chr3 (29-69)||(51764059-51764099)
[»] chr6 (18 HSPs)
chr6 (418-514)||(6432162-6432258)
chr6 (417-516)||(6423216-6423315)
chr6 (440-509)||(6585261-6585330)
chr6 (441-516)||(6426510-6426585)
chr6 (422-513)||(14802338-14802429)
chr6 (441-514)||(6394865-6394938)
chr6 (418-511)||(6410010-6410103)
chr6 (28-69)||(8913681-8913722)
chr6 (441-511)||(10579761-10579831)
chr6 (446-514)||(6402861-6402929)
chr6 (430-514)||(6594620-6594704)
chr6 (430-514)||(14820694-14820778)
chr6 (441-508)||(6415973-6416040)
chr6 (441-514)||(6596953-6597026)
chr6 (441-510)||(7119162-7119231)
chr6 (441-510)||(7131640-7131709)
chr6 (441-501)||(6589348-6589408)
chr6 (420-460)||(12102321-12102361)
[»] chr2 (6 HSPs)
chr2 (418-500)||(32785774-32785856)
chr2 (450-508)||(44575529-44575587)
chr2 (422-514)||(45245091-45245183)
chr2 (330-396)||(43277371-43277440)
chr2 (28-69)||(1037273-1037314)
chr2 (405-514)||(1037653-1037762)
[»] scaffold0041 (1 HSPs)
scaffold0041 (443-514)||(39185-39256)
[»] chr7 (1 HSPs)
chr7 (441-514)||(15092176-15092249)


Alignment Details
Target: chr1 (Bit Score: 534; Significance: 0; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 20 - 573
Target Start/End: Complemental strand, 52093272 - 52092719
Alignment:
Q  20 attgttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaact 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093272 attgttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaact 52093173  T
Q  120 gtcctttcctcagcgagatcagaagtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093172 gtcctttcctcagcgagatcagaagtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctct 52093073  T
Q  220 ccatttggcaggcaatccacggttgaaaaatgaaagcatcaaaatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgc 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52093072 ccatttggcaggcaatccacggttgaaaaatgaaagcatcaaaatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatgagatattgc 52092973  T
Q  320 cattgctattgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaa 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092972 cattgctattgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaa 52092873  T
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatact 519  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||||| ||||    
T  52092872 tgaactttcaagtttccaaattggaggtgttgaacttggcaaagacaaaaattgatgatgacacattgtatgtgatctcaaagagtttttgtgggctact 52092773  T
Q  520 acatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgt 573  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52092772 acaattggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgt 52092719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 21 - 573
Target Start/End: Complemental strand, 52083075 - 52082523
Alignment:
Q  21 ttgttgggttgtctttggttcttggtaatttggtgtctataaaccttagcccttgtaccaatatcactgaattaaccttggtgtcactagttaggaactg 120  Q
    ||||||||||||||  ||||||||||| |||| |||||||||||||||||| |||||   |||||||||||||||||||| |||||||||||||||||||    
T  52083075 ttgttgggttgtctacggttcttggtagtttgctgtctataaaccttagccattgta---atatcactgaattaaccttgctgtcactagttaggaactg 52082979  T
Q  121 tcctttcctcagcgagatcagaa---------gtggtattggaaagttttgtgataagaattgtaattgtttgatggactttgttgtataccctcaagtg 211  Q
    ||||||||||||| |||||| ||         ||| |||||||||||||||||||||||| | ||||| |||| ||||||||||||||||||||||||||    
T  52082978 tcctttcctcagcaagatcataatggaatgcagtgatattggaaagttttgtgataagaactctaattctttgctggactttgttgtataccctcaagtg 52082879  T
Q  212 aagtctctccatttggcaggcaatccacggttgaaaaatgaaagcatcaaaatgttgccttctcttttcccaaacctgcaggggcttgacctgagaatga 311  Q
    |||||||||||||||||  ||||||||  |||||| ||||||||||||||||||||| |||||||||| |||||| |||| | |||||||||||||        
T  52082878 aagtctctccatttggctcgcaatccattgttgaagaatgaaagcatcaaaatgttggcttctctttttccaaacttgcaagtgcttgacctgaga---- 52082783  T
Q  312 gatattgccattgctattgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatct 411  Q
      ||||||||||||||||||||||| || ||||| |||||||||||||||| ||||||||||| ||| ||| || |||||||||| |||||| |||||||    
T  52082782 --tattgccattgctattgcatatctgacggtatcgttgaagttttaagatattgtaaaattattcacttggacatgagatcttgttcaacactgaatct 52082685  T
Q  412 actttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52082684 actttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 52082585  T
Q  512 gggatactacatttggacttggaacggtgtgatcatatcacagagaaaggagtgaggcacgt 573  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||||    
T  52082584 gggatactacaattggacttggaacggtgtgatcatatcacagagaaaggagtcgggcacgt 52082523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 405 - 513
Target Start/End: Original strand, 19468488 - 19468596
Alignment:
Q  405 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 504  Q
    |||||||||||  | ||||||||  |||| ||||  ||||||||||||| |||||| | |||||  |||||||||||||| | ||||||||||||||||     
T  19468488 tgaatctacttggagtgaactttgtagttcccaagctggaggtgttgaagttgtcagatacaaaggttgatgatgaaacactttatgtgatctcaaagaa 19468587  T
Q  505 ttgttgtgg 513  Q
     ||||||||    
T  19468588 ctgttgtgg 19468596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 19468117 - 19468158
Alignment:
Q  28 gttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    |||||||||| |||||||| |||| |||||||||||||||||    
T  19468117 gttgtctttgtttcttggtgatttagtgtctataaaccttag 19468158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 2e-23; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 27922605 - 27922509
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||||  ||||||||||| || | ||| |||||||||||||||||||||||    
T  27922605 aatgaactttgaagttcccaaattggaggtgttgaacttgtcatatacaaatgttgatgatgaagcactttatatgatctcaaagagttgttgtggg 27922509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 508
Target Start/End: Original strand, 17636403 - 17636493
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 508  Q
    |||||||||| ||||| |||||||||||||||||||||||||| | |||  | |||| |||||| ||||||||||||||||||||||||||    
T  17636403 aatgaactttgaagttcccaaattggaggtgttgaacttgtcacaaacaggagttgacgatgaagcattgtatgtgatctcaaagagttgt 17636493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 418 - 508
Target Start/End: Original strand, 18315275 - 18315365
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 508  Q
    |||||||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | |||||||||||||||||||||    
T  18315275 aatgaactttaaagttcccaaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaagagttgt 18315365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 32151398 - 32151302
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||  ||||||||||  |||||||||| |||||||||   ||||   |||||||||||||| | ||||||||||||||||||||| |||||    
T  32151398 aatgaacttcgaagtttccaatctggaggtgttaaacttgtcatgtacaaggtttgatgatgaaacactctatgtgatctcaaagagttgtagtggg 32151302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 514
Target Start/End: Original strand, 17628018 - 17628112
Alignment:
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||| || |||| |||||||||||||||||||||||| | || | | |||||||| || || |   |||||||||||||| ||||| ||||    
T  17628018 tgaactttaaactttctaaattggaggtgttgaacttgtcacatactagagttgatgataaagcactccgtgtgatctcaaagaattgttttggg 17628112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 21235653 - 21235613
Alignment:
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtca 460  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  21235653 tgaactttgaagttcccaaactggaggtgttgaacttgtca 21235613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 405 - 510
Target Start/End: Original strand, 41889543 - 41889648
Alignment:
Q  405 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 504  Q
    |||| ||||||  |||||||||| ||||| |||||||||||||||||||||| ||| | |||||| |||||||||||||| | |||  ||||||||||||    
T  41889543 tgaagctacttgaaatgaactttaaagttcccaaattggaggtgttgaacttatcatatacaaaagttgatgatgaaacactttataagatctcaaagag 41889642  T
Q  505 ttgttg 510  Q
    ||||||    
T  41889643 ttgttg 41889648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 32267572 - 32267476
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | |||| | ||||||||||| || | ||| |||||||||||||||||||||||    
T  32267572 aatgaactttgaagttcccaaattggaggtattgaacttgtcacaaacaatagttgatgatgaagcactttatatgatctcaaagagttgttgtggg 32267476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 423 - 513
Target Start/End: Original strand, 41901542 - 41901632
Alignment:
Q  423 actttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 513  Q
    ||||| ||||| ||||| |||||||||||||||||||| | |||||| ||||||||||| || | ||| ||||||||||||||||||||||    
T  41901542 actttgaagttcccaaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaagagttgttgtgg 41901632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 20478107 - 20478180
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||||||||||||| | |||||  ||||||| |||||||| | ||||||||||| || ||||||||||    
T  20478107 tggaggtgttgaacttgtcatatacaaatgttgatgacgaaacattatctgtgatctcaaggaattgttgtggg 20478180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 2e-20; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 337 - 514
Target Start/End: Original strand, 1548344 - 1548522
Alignment:
Q  337 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaacttgagatcttggtc-aacattgaatctactttcaa-tgaactttcaagttt 434  Q
    ||||||||||  ||||||||||||||||||||| ||||  || |||||||| || || | ||  || | |||| |||||||  | |||||||| || ||     
T  1548344 cgaaggtatttgtgaagttttaagatgttgtaagattagacagttgaactt-agctcgtagtttaaaagtgaagctactttggactgaactttgaaattc 1548442  T
Q  435 ccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||| |||||||||||||||||||| | ||||  ||||||||||||||| |  ||||||||||||||||||||||||||    
T  1548443 ccaaactggaggtgttgaacttgtcacatacaagtattgatgatgaaacactcaatgtgatctcaaagagttgttgtggg 1548522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 8187093 - 8187189
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| || |||||||| |||||||||||||||||||| | |||| | |||||||| ||||| | ||||  || ||||||||||||||||||    
T  8187093 aatgaactttgaaatttccaaactggaggtgttgaacttgtcacatacaagagttgatgataaaacactttatgcaatttcaaagagttgttgtggg 8187189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 418 - 511
Target Start/End: Complemental strand, 7307957 - 7307864
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 511  Q
    |||||||||| ||||| ||||||||||||| |||||||||||| | ||| || ||||||||||| || |   | ||||||||||||||||||||    
T  7307957 aatgaactttaaagttcccaaattggaggtattgaacttgtcatatacagaagttgatgatgaagcactacgtatgatctcaaagagttgttgt 7307864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 547010 - 546914
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| | |||||||||||| |||||||||||   ||||   |  ||||||||||| | |||||||||||||||||||||||||||    
T  547010 aatgaactttgaagttcctaaattggaggtggtgaacttgtcacgtacaattgtcaatgatgaaacactctatgtgatctcaaagagttgttgtggg 546914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 1524488 - 1524584
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| |||| |||||||||||||| ||||||   ||||   |||||||||||||| | ||| |||||||| |||||||| |||||    
T  1524488 aatgaactttgaagttcccaatttggaggtgttgaatttgtcacgtacaagtgttgatgatgaaacactctatatgatctcacagagttgtcgtggg 1524584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 405 - 508
Target Start/End: Complemental strand, 532299 - 532196
Alignment:
Q  405 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 504  Q
    |||||||||||  |||||||||| ||||  ||||  | |||||||||||||||||| | ||||| |||||||||||||   | ||||||| ||||||||     
T  532299 tgaatctacttggaatgaactttgaagtccccaagctagaggtgttgaacttgtcatatacaaacattgatgatgaaaagctttatgtgacctcaaagaa 532200  T
Q  505 ttgt 508  Q
    ||||    
T  532199 ttgt 532196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 328 - 387
Target Start/End: Complemental strand, 1754670 - 1754611
Alignment:
Q  328 ttgcatatccgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 387  Q
    |||||||||  ||||||| ||||||||||||||||||| ||||||||| || ||||||||    
T  1754670 ttgcatatctaaaggtatcgttgaagttttaagatgttctaaaattacacaattgaactt 1754611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 514
Target Start/End: Complemental strand, 553574 - 553480
Alignment:
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||| |||||  |||| ||||||||||||||||||||   |||| | ||||||||||| || |  ||||||| ||||||||||||| ||||    
T  553574 tgaactttaaagttctcaaactggaggtgttgaacttgtcatttacaagagttgatgatgaagcacttaatgtgatttcaaagagttgttctggg 553480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 417 - 514
Target Start/End: Original strand, 3438567 - 3438663
Alignment:
Q  417 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||| | ||||| ||||||||||| |||| ||||||| | |||| | |||||||| ||| | |  |||| |||||||||||||||||||||    
T  3438567 caatgaactttgatgtttcaaaattggaggtattgagcttgtcacatacaagagttgatgat-aaatactccatgtaatctcaaagagttgttgtggg 3438663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 55908337 - 55908378
Alignment:
Q  28 gttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  55908337 gttgtctttgtttcttggtgatttggtgtctataaaccttag 55908378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 439 - 503
Target Start/End: Complemental strand, 640991 - 640927
Alignment:
Q  439 attggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 503  Q
    |||||||||||||||||||||| | |||||  |||||||||||||| | || |||| ||||||||    
T  640991 attggaggtgttgaacttgtcagatacaaacgttgatgatgaaacactctacgtgacctcaaaga 640927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 1513409 - 1513505
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| ||||| | || |||||||||||||||   |||||  |||||||||||||| | || || ||||||||| ||||| |||||    
T  1513409 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatttacaaatgttgatgatgaaacactctacgtaatctcaaagtgttgtcgtggg 1513505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 8184032 - 8184128
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| | ||| | |||||||||||||||||| | |||| | ||||||||  | || | ||||  |||||||||||||||||||||    
T  8184032 aatgaactttgaagttccgaaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaagagttgttgtggg 8184128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 437 - 472
Target Start/End: Complemental strand, 1754589 - 1754554
Alignment:
Q  437 aaattggaggtgttgaacttgtcaaagacaaaaatt 472  Q
    ||||||||||||||||||||||| ||||||||||||    
T  1754589 aaattggaggtgttgaacttgtcgaagacaaaaatt 1754554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 337 - 387
Target Start/End: Original strand, 1552685 - 1552735
Alignment:
Q  337 cgaaggtattgttgaagttttaagatgttgtaaaattactcatttgaactt 387  Q
    ||||||||||  ||||||||||||||||||||| ||||  |||||||||||    
T  1552685 cgaaggtatttgtgaagttttaagatgttgtaagattagacatttgaactt 1552735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 514
Target Start/End: Original strand, 1552771 - 1552865
Alignment:
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||| || || ||||| |||| |||||||| |||||| | ||||| ||| ||||||||||| |  ||||||| ||||||| |||| |||||    
T  1552771 tgaactttgaaattcccaaactggaagtgttgaatttgtcacatacaaatattaatgatgaaacactcaatgtgatatcaaagaattgtcgtggg 1552865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 418 - 484
Target Start/End: Original strand, 12121459 - 12121525
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaaca 484  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  ||||||||||||||    
T  12121459 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttgatgatgaaaca 12121525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 445 - 514
Target Start/End: Complemental strand, 558568 - 558499
Alignment:
Q  445 ggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||||||||   ||| | |||||||||||| || |  |||||||||||||||||||| |||||    
T  558568 ggtgttgaacttgtcattaacatatattgatgatgaagcactccatgtgatctcaaagagttgtcgtggg 558499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 55908717 - 55908826
Alignment:
Q  405 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 504  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  55908717 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 55908816  T
Q  505 ttgttgtggg 514  Q
    ||||||||||    
T  55908817 ttgttgtggg 55908826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 168 - 228
Target Start/End: Complemental strand, 547254 - 547194
Alignment:
Q  168 agaattgtaattgtttgatggactttgttgtataccctcaagtgaagtctctccatttggc 228  Q
    |||||| ||||| ||| | ||| |||||||||  ||||||| |||||||||||||||||||    
T  547254 agaattctaattctttcaaggattttgttgtaagccctcaattgaagtctctccatttggc 547194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 446 - 514
Target Start/End: Original strand, 1508033 - 1508101
Alignment:
Q  446 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||||||| | || ||  |||||||||||||| ||| ||| ||||||||| ||||| |||||    
T  1508033 gtgttgaacttgtcacataccaatgttgatgatgaaacactgtgtgtaatctcaaagtgttgtcgtggg 1508101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 1537769 - 1537865
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| ||||| | || ||||||||||||||| | |||||  || ||||  ||||| ||| ||| ||||||||| ||||| |||||    
T  1537769 aatgaactttgaagttcccaaactagaagtgttgaacttgtcatatacaaatgttaatgacaaaacactgtgtgtaatctcaaagtgttgtcgtggg 1537865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 53761398 - 53761438
Alignment:
Q  29 ttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  53761398 ttgtctttgcttcttggtgatttggtgtccataaaccttag 53761438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 48; Significance: 4e-18; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 332 - 514
Target Start/End: Original strand, 51113694 - 51113879
Alignment:
Q  332 atatccgaaggtattgttgaagttttaa---gatgttgtaaaattactcatttgaacttgagatcttggtcaacattgaatctactttcaatgaactttc 428  Q
    |||||||||||||||  | |||||||||   |||||||||||||||  |||||||| ||    |  || |||| | |||| ||||||  ||||||||||     
T  51113694 atatccgaaggtatttgtcaagttttaaagagatgttgtaaaattaggcatttgaaattagcttactgttcaaaactgaagctacttggaatgaactttg 51113793  T
Q  429 aagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||| | ||||| ||||||||||  |||||||||| ||||   |||||||||||||| | ||||||||||| |||||||||||||||    
T  51113794 aagctcccaaactggaggtgttagacttgtcaaatacaatggttgatgatgaaacactctatgtgatctcgaagagttgttgtggg 51113879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Original strand, 51120895 - 51120991
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| |||||  ||||||||||||||||||||||||  | |||| | |||||||||||| | | ||||| ||||||||||||||| |||||    
T  51120895 aatgaactttgaagttctcaaattggaggtgttgaacttgtcgcatacaagagttgatgatgaaaaactatatgtaatctcaaagagttgtcgtggg 51120991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 422 - 569
Target Start/End: Original strand, 33714861 - 33715008
Alignment:
Q  422 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactac 521  Q
    |||||| ||||||||||| |||||||| |||||||||||||  ||| |||||||||||   ||||||||| ||| |||||||||||   | || | ||||    
T  33714861 aactttgaagtttccaaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccctcggcttctac 33714960  T
Q  522 atttggacttggaacggtgtgatcatatcacagagaaaggagtgaggc 569  Q
    || ||||| |||||   ||| ||||| |||| ||||| ||||||||||    
T  33714961 atctggacctggaagattgtcatcatgtcacggagaagggagtgaggc 33715008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 431 - 569
Target Start/End: Original strand, 33708989 - 33709127
Alignment:
Q  431 gtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggatactacatttggact 530  Q
    ||||||||| |||||||| ||||||||||| |  ||| |||||||||||   |||||||||  ||||||||||||||   | || | |||||| |||||     
T  33708989 gtttccaaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacc 33709088  T
Q  531 tggaacggtgtgatcatatcacagagaaaggagtgaggc 569  Q
    ||||| | ||| ||||| |||| ||||| ||||||||||    
T  33709089 tggaaggatgtcatcatgtcacggagaagggagtgaggc 33709127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 13470757 - 13470830
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| |||||||||||| ||||||||||    
T  13470757 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaacactctatatgatctcaaagaattgttgtggg 13470830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 433 - 500
Target Start/End: Original strand, 37580837 - 37580904
Alignment:
Q  433 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 500  Q
    ||||||| | ||||| ||||||||||||||  ||| |||||||||| ||  |||||||||||||||||    
T  37580837 ttccaaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaa 37580904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 195 - 253
Target Start/End: Original strand, 27005557 - 27005615
Alignment:
Q  195 ttgtataccctcaagtgaagtctctccatttggcaggcaatccacggttgaaaaatgaa 253  Q
    ||||||||  |||||||||||||||| ||||||| | ||||||||| |||||| |||||    
T  27005557 ttgtatacaatcaagtgaagtctctctatttggctgacaatccacgtttgaaagatgaa 27005615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Complemental strand, 33396820 - 33396786
Alignment:
Q  194 gttgtataccctcaagtgaagtctctccatttggc 228  Q
    |||||||||| ||||||||||||||||||||||||    
T  33396820 gttgtataccatcaagtgaagtctctccatttggc 33396786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 33708804 - 33708838
Alignment:
Q  194 gttgtataccctcaagtgaagtctctccatttggc 228  Q
    |||||||||| ||||||||||||||||||||||||    
T  33708804 gttgtataccatcaagtgaagtctctccatttggc 33708838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 228
Target Start/End: Original strand, 37580607 - 37580641
Alignment:
Q  194 gttgtataccctcaagtgaagtctctccatttggc 228  Q
    |||||||||| ||||||||||||||||||||||||    
T  37580607 gttgtataccatcaagtgaagtctctccatttggc 37580641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 503
Target Start/End: Original strand, 37587571 - 37587641
Alignment:
Q  433 ttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaaga 503  Q
    ||||||| ||||||| |||||||||||| |  ||| |||||||||| ||  |||||||| |||||||||||    
T  37587571 ttccaaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaaga 37587641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 228
Target Start/End: Original strand, 33093715 - 33093748
Alignment:
Q  195 ttgtataccctcaagtgaagtctctccatttggc 228  Q
    ||||||||| ||||||||||||||||||||||||    
T  33093715 ttgtataccgtcaagtgaagtctctccatttggc 33093748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 51764059 - 51764099
Alignment:
Q  29 ttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    ||||||||| ||||| ||||||||||||| |||||||||||    
T  51764059 ttgtctttgtttcttagtaatttggtgtccataaaccttag 51764099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 2e-16; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 418 - 514
Target Start/End: Complemental strand, 6432258 - 6432162
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||| ||||| ||||  || ||||||||||||||||||| ||||   |||||||||||||| | |||||||||| ||||| ||||||||||    
T  6432258 aatgaactttgaagttcccaagctgaaggtgttgaacttgtcaaatacaagcgttgatgatgaaacactttatgtgatcttaaagaattgttgtggg 6432162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 417 - 516
Target Start/End: Complemental strand, 6423315 - 6423216
Alignment:
Q  417 caatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 516  Q
    ||||||||||| ||||| ||||  |||||||||||||||||||||| |||| | ||   ||| ||||| | |||| ||||||||||||||||||||||||    
T  6423315 caatgaacttttaagttcccaagctggaggtgttgaacttgtcaaatacaagagttagcgataaaacactctatgcgatctcaaagagttgttgtgggat 6423216  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 440 - 509
Target Start/End: Original strand, 6585261 - 6585330
Alignment:
Q  440 ttggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgtt 509  Q
    |||||||| |||||||||||| | |||||  |||||||||||||| | ||||||||||||||||||||||    
T  6585261 ttggaggtattgaacttgtcagatacaaaggttgatgatgaaacactctatgtgatctcaaagagttgtt 6585330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 441 - 516
Target Start/End: Complemental strand, 6426585 - 6426510
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgggat 516  Q
    ||||||||||||| |||||||| ||||  |||||||||||||| || |||| ||||||||||| ||||||| ||||    
T  6426585 tggaggtgttgaatttgtcaaacacaagcattgatgatgaaactttttatgcgatctcaaagaattgttgtcggat 6426510  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 422 - 513
Target Start/End: Complemental strand, 14802429 - 14802338
Alignment:
Q  422 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtgg 513  Q
    |||||| ||||| ||||  |||| |||||||| |||||||| |||||  |||||||||||||| | |||||||| ||||||| |||||||||    
T  14802429 aactttgaagttcccaagatggaagtgttgaatttgtcaaatacaaaggttgatgatgaaacactctatgtgatttcaaagaattgttgtgg 14802338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 441 - 514
Target Start/End: Complemental strand, 6394938 - 6394865
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||||||||||||||| ||||   |||||||||||||  | | |||||||||||||| ||||||||||    
T  6394938 tggaggtgttgaacttgtcaaatacaagcgttgatgatgaaactctttctgtgatctcaaagaattgttgtggg 6394865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 418 - 511
Target Start/End: Complemental strand, 6410103 - 6410010
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 511  Q
    |||||||||| ||||| ||||  || |||||||||||| |||||| ||||   |||||||||||||  | |||||||||||||||| |||||||    
T  6410103 aatgaactttgaagttcccaagctgaaggtgttgaactagtcaaatacaagcgttgatgatgaaactctttatgtgatctcaaagaattgttgt 6410010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 8913681 - 8913722
Alignment:
Q  28 gttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    |||||||||| |||||||||||||||||||||||||||||||    
T  8913681 gttgtctttgtttcttggtaatttggtgtctataaaccttag 8913722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 511
Target Start/End: Original strand, 10579761 - 10579831
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgt 511  Q
    |||||||||||||||||||| | |||||| |||||||| ||||| | |||  ||||||||||| |||||||    
T  10579761 tggaggtgttgaacttgtcatatacaaaagttgatgataaaacactctattcgatctcaaagaattgttgt 10579831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 446 - 514
Target Start/End: Complemental strand, 6402929 - 6402861
Alignment:
Q  446 gtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||||||| | || ||  |||||||||||||| | |||||||||||||||| |||| |||||    
T  6402929 gtgttgaacttgtcagatacgaaggttgatgatgaaacactctatgtgatctcaaagaattgtagtggg 6402861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 514
Target Start/End: Original strand, 6594620 - 6594704
Alignment:
Q  430 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||| ||||| ||||||||||| |||||||||| ||| |  |||||||||| ||| |   |||||||||||||| ||||||||||    
T  6594620 agttcccaaactggaggtgttgtacttgtcaaatacagaggttgatgatgagacactacgtgtgatctcaaagaattgttgtggg 6594704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 514
Target Start/End: Complemental strand, 14820778 - 14820694
Alignment:
Q  430 agtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||| |||| || |||||||||||||| ||||| |||||  ||||| |||||||| | ||| ||||||| |||| ||||||||||    
T  14820778 agttcccaagttagaggtgttgaacttatcaaatacaaaggttgataatgaaacactttatatgatctccaagaattgttgtggg 14820694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 441 - 508
Target Start/End: Complemental strand, 6416040 - 6415973
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 508  Q
    |||||||||||||||||||||| |||||  || ||||| ||||  | |||||||||||||||| ||||    
T  6416040 tggaggtgttgaacttgtcaaatacaaaggttaatgataaaactctctatgtgatctcaaagaattgt 6415973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 6596953 - 6597026
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||||||||||||||||||  |||||  |||||||||||||| | || |  |||||||||| ||||| ||||    
T  6596953 tggaggtgttgaacttgtcaagtacaaatgttgatgatgaaacactctacgctatctcaaagaattgttctggg 6597026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 7119231 - 7119162
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 510  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7119231 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7119162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 510
Target Start/End: Complemental strand, 7131709 - 7131640
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttg 510  Q
    |||||||||||||||||||| | || ||  |||||||||||||| |  |||||||||| |||| ||||||    
T  7131709 tggaggtgttgaacttgtcagatacgaaggttgatgatgaaacactccatgtgatctcgaagaattgttg 7131640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 441 - 501
Target Start/End: Original strand, 6589348 - 6589408
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaa 501  Q
    |||||||||||||||||||||| |||||  || ||||| ||||| | ||| ||||||||||    
T  6589348 tggaggtgttgaacttgtcaaatacaaatgttaatgataaaacactatatctgatctcaaa 6589408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 420 - 460
Target Start/End: Complemental strand, 12102361 - 12102321
Alignment:
Q  420 tgaactttcaagtttccaaattggaggtgttgaacttgtca 460  Q
    |||||||| ||||| ||||| ||||||||||||||||||||    
T  12102361 tgaactttgaagttcccaaactggaggtgttgaacttgtca 12102321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 418 - 500
Target Start/End: Original strand, 32785774 - 32785856
Alignment:
Q  418 aatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaa 500  Q
    |||||||||| ||| | ||||| | |||||||||||||||||| | |||| ||||||||||||| || | |||||||||||||    
T  32785774 aatgaactttaaagctcccaaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 450 - 508
Target Start/End: Original strand, 44575529 - 44575587
Alignment:
Q  450 tgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgt 508  Q
    |||| |||||||| |||| | |||||||||| |||||||||||||||||||||||||||    
T  44575529 tgaatttgtcaaaaacaagagttgatgatgacacattgtatgtgatctcaaagagttgt 44575587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 422 - 514
Target Start/End: Original strand, 45245091 - 45245183
Alignment:
Q  422 aactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    |||||| ||||| | ||| | ||||||||||| |||||| ||||||   |||||||||||||| |  |||||||||||||||||||| |||||    
T  45245091 aactttgaagttccaaaacttgaggtgttgaatttgtcagagacaatggttgatgatgaaacactccatgtgatctcaaagagttgtcgtggg 45245183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 330 - 396
Target Start/End: Original strand, 43277371 - 43277440
Alignment:
Q  330 gcatatccgaaggtattgttgaagttttaag---atgttgtaaaattactcatttgaacttgagatcttg 396  Q
    ||||||| ||| ||||||| |||||||||||   ||||||||||||||| ||||||||||||| ||||||    
T  43277371 gcatatctgaatgtattgtcgaagttttaaggagatgttgtaaaattacgcatttgaacttgacatcttg 43277440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 1037273 - 1037314
Alignment:
Q  28 gttgtctttggttcttggtaatttggtgtctataaaccttag 69  Q
    |||||||||| |||||||| ||||||||||||||||||||||    
T  1037273 gttgtctttgtttcttggtgatttggtgtctataaaccttag 1037314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 405 - 514
Target Start/End: Original strand, 1037653 - 1037762
Alignment:
Q  405 tgaatctactttcaatgaactttcaagtttccaaattggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagag 504  Q
    |||| ||||||  ||| |||||| ||||| |  |||| |||||||| ||||||||| | |||    |||||||||||||| | ||| ||||||||||||     
T  1037653 tgaaactacttagaataaactttaaagttcctgaattagaggtgtttaacttgtcacatacatgtgttgatgatgaaacactctatatgatctcaaagaa 1037752  T
Q  505 ttgttgtggg 514  Q
    ||||||||||    
T  1037753 ttgttgtggg 1037762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 514
Target Start/End: Complemental strand, 39256 - 39185
Alignment:
Q  443 gaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||||||| ||   |||||  || ||||||||||| | ||||||||||||||||||||| |||||    
T  39256 gaggtgttgaacttgacatttacaaaggttaatgatgaaacactttatgtgatctcaaagagttgtagtggg 39185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 441 - 514
Target Start/End: Original strand, 15092176 - 15092249
Alignment:
Q  441 tggaggtgttgaacttgtcaaagacaaaaattgatgatgaaacattgtatgtgatctcaaagagttgttgtggg 514  Q
    ||||||||||||| |||||| | |||||  || ||||| ||||| | |||| ||||||||||| ||||||||||    
T  15092176 tggaggtgttgaatttgtcagaaacaaaggttaatgataaaacactctatgcgatctcaaagaattgttgtggg 15092249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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