View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6663_low_2 (Length: 522)
Name: NF6663_low_2
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 16 - 512
Target Start/End: Original strand, 809252 - 809749
Alignment:
| Q |
16 |
atctcactctccctctgcagtgtcctcccctctgctgcaatttatctggtatcctctgtttttattattgctttgctttccttaaaatggagtgactcca |
115 |
Q |
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| T |
809252 |
atctcactctccctctgcagtgtcctcccctctgctgcaatttttctggtatcctctgtttttattattgctttgctttccttaaaatggagtgactcca |
809351 |
T |
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| Q |
116 |
tatttaccttttgggcatttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaaaggtcaatattagagttgatttc |
215 |
Q |
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| T |
809352 |
tatttaccttttgggcatttgcatttgatttttgtacttgcaaattgcaatgaagctcttcaactgtgctattgaaaaggtcaatattagagttgatttc |
809451 |
T |
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| Q |
216 |
agtattgttatttgttatatgctttaggatatttctgagtatagattcatcaaacatttttatcttatgctttgttgttagctgtttattgagttcag-n |
314 |
Q |
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| T |
809452 |
agtattgttaattgttatatgctttaggatatttctgagtatagattcatctaacatttttatcttatgctttgttgttagctg-ttattgagttcagtt |
809550 |
T |
|
| Q |
315 |
nnnnnnnactcaagaatcaagctttgaaggaccttattttcctttagtctgacgaatattgtatagtataatatgcttaagctcgaatttctcacatttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
809551 |
tttttttactcaagaatcaagctttgaaggaccttattttccttttgtctgacgaatattgtatagtataatatgcttaagctcgaatttctcacatttt |
809650 |
T |
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| Q |
415 |
tagaccagacgggataacaggctatgttctttttactcacataacatgttatgct-gaagaagaaaaaagcaacaaacaatatttcccttctatctctg |
512 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||| ||||||||||| |
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| T |
809651 |
tagaccagacgggataacaggctatgttctttttactcacataacatgttatgctggaagaaaaaaaaagcaacaaacaatatttcctttctatctctg |
809749 |
T |
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