View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6663_low_3 (Length: 486)
Name: NF6663_low_3
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_low_3 |
 | |
|
| [»] scaffold0065 (1 HSPs) |
| | |
|
| [»] scaffold0671 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 470
Target Start/End: Original strand, 34454988 - 34455453
Alignment:
| Q |
1 |
aagggccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
34454988 |
aagggccaagaaagctaaggaggcgctaactcaattggtggcaaacttcttggagttcaaacctacactaggaagcatgaagggtagaatgatcatgtgc |
34455087 |
T |
|
| Q |
101 |
atcaaaccattggaggatgggtggggcggatctcttactgcccattttatatatctagttattttgttatgttgtaataaaaagtgaaagggtacattat |
200 |
Q |
| |
|
||||||||||||||||| |||||| ||| ||||||| | ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34455088 |
atcaaaccattggaggaggggtggagcgcatctcttgcagcccattttat----ctagttatattgttatgttgtaataaaaagtgaaagggtacattat |
34455183 |
T |
|
| Q |
201 |
ttggcccaaagacacttaattaagttttccctaattttaaggtcgtctcaaagcttccaagtttggaatggtaaagttgtgtgtttaattattgcaagta |
300 |
Q |
| |
|
|||||||||||||||||| |||||| |||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
34455184 |
ttggcccaaagacacttagttaagtcttccctaattttaaggtcatcttaaagcttccaaacttggaatggtaaagttgtgtgtttaattattgcaaata |
34455283 |
T |
|
| Q |
301 |
aaggttctgaagcaaggaggaaacaaatgagtcaatggtgcaattaagatgagagaagtggcgcaagacaagnnnnnnngcaaagaataatcagcattca |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
34455284 |
aaggttctgaagcaaggaggaaacaaatgagtcaatggtgcaattaagatgagagaagtggcgcaagacaagaaaaaaaggaaagaataatcagcattca |
34455383 |
T |
|
| Q |
401 |
aagagctcataatgaggcaatcaaggaaggattttcaacattctaacctccttcttgcctttgtggcgcc |
470 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
34455384 |
aagagctcataatgaggcaatcaaggaaggattttcagcattctaacctccttcttgcctttgtggcgcc |
34455453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 11474915 - 11475092
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
11474915 |
ccaagaaagctaaggaggccctaactcaattggtggcaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
11475014 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
11475015 |
accattggaggaggggtggggcgcatctcttgctgcccattt----tatttagttgttcttgttatgttgtaataaaaagtg |
11475092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 2e-59; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 21302585 - 21302408
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
21302585 |
ccaagaaagctaaggaggccctaactcaattggtggcaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
21302486 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
21302485 |
accattggaggaggggtggggcgcatctcttgctgcccattt----tatttagttgttcttgttatgttgtaataaaaagtg |
21302408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 12638862 - 12639039
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
12638862 |
ccaagaaagctaaggaggccctaactcaattggtggcaaaagtcttggagtccaaaccgacactagaaagcatggaggataaaatggtcatgtgcatcaa |
12638961 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttattttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| || | | | ||||||||||||||||||||||| |
|
|
| T |
12638962 |
accattggaggaggggtggggcgcatctcttgctgcccattttattta---attgttcttgttatgttgtaataaaaagtg |
12639039 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 9343714 - 9343855
Alignment:
| Q |
1 |
aagggccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgc |
100 |
Q |
| |
|
|||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || |||||||| || ||||||||||||| |
|
|
| T |
9343714 |
aaggaccaagaaagctaaggagagcctaactcaattggtggcaaaagtcttggagttcaaaccaacactagaaaacatggaggataaaatggtcatgtgc |
9343813 |
T |
|
| Q |
101 |
atcaaaccattggaggatgggtggggcggatctcttactgcc |
142 |
Q |
| |
|
||||||||||||||||| |||||||| | ||||||| ||||| |
|
|
| T |
9343814 |
atcaaaccattggaggaggggtggggtgcatctcttgctgcc |
9343855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 113; Significance: 5e-57; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 13180694 - 13180550
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
13180694 |
ccaagaaagctaaggaggccctaactcaattggtggcaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
13180595 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttat |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
13180594 |
accattggaggaggggtggggcgcatctcttgctgcccattttat |
13180550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 13185228 - 13185084
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
13185228 |
ccaagaaagctaaggaggccctaactcaattggtggcaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
13185129 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttat |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
13185128 |
accattggaggaggggtggggcgcatctcttgctgcccattttat |
13185084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 33758772 - 33758628
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||| ||||||| ||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
33758772 |
ccaagaaagttaaggaggccttaactcaattggtggcaaaagttttggagtccaaacctacactataaagcatggaggataaaatggtcatgtgcatcaa |
33758673 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttat |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||| ||||||||| |
|
|
| T |
33758672 |
accattggaggaggggtggggcgcatctcttgctgtccattttat |
33758628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 22708630 - 22708442
Alignment:
| Q |
1 |
aagggccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgc |
100 |
Q |
| |
|
|||| ||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||||| |||| ||||||||||| || ||||||||||||| |
|
|
| T |
22708630 |
aaggaccaagaaagttaaggaggccctaactcaattgatggcaaaagtcttggagttcaaacctacgctagaaagcatggaggataaaatggtcatgtgc |
22708531 |
T |
|
| Q |
101 |
atcaaaccattggaggatgggtggggcggatctcttactgcccattttatatatctagtta-ttttgttatgttgtaataaaaagtgaaaggg |
192 |
Q |
| |
|
|||||||||||||||||||| ||||||| || |||| |||||||||| ||| |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
22708530 |
atcaaaccattggaggatggatggggcgcatatcttgctgcccattt----tatttagttatttttgttatgttgtaataaaaagtgtaaggg |
22708442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 21369425 - 21369248
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||| ||||||||| | || |||||||||||||||||| |
|
|
| T |
21369425 |
ccaagaaagctaaggaggccctaactcaattgatggcaaaagtcttggagtccaaacctacactagaaagcatggatgataaaatggtcatgtgcatcaa |
21369326 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| |||||||||| |||| || |||||||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
21369325 |
accattggaggaggggtggggcgcatctgttgctgcccattt----tatttagttgttcttgttatgttgtaataaaaagtg |
21369248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 186
Target Start/End: Original strand, 16156306 - 16156483
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
|||||| |||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| || |||||||| || |||||||||||||||||| |
|
|
| T |
16156306 |
ccaagagagctaaggaggccctaactcaattggtggaaaaagtcttggagtccaaacctacactagaaatcatggaggataaaatggtcatgtgcatcaa |
16156405 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| ||||||||| ||||||| |||| ||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
16156406 |
accattggaggaggggtggggcacatctcttgctgctcattt----tatttagttgttcttgttatgttgtaataaaaagtg |
16156483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0065 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: scaffold0065
Description:
Target: scaffold0065; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 34561 - 34384
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
34561 |
ccaagaaagttaaggaggccctaactcaattggtggcaaaagtcttagagttcaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
34462 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| |||||| ||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
34461 |
accattggaggaggggtggggcgcatctcttgctgcccgttt----tatttagttgttcttgttatgttgtaataaaaagtg |
34384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 102; Significance: 2e-50; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 18775108 - 18774931
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
18775108 |
ccaagaaagctaaggaggacctaactcaattggtggaaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
18775009 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttatatatctagttattttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||| ||||||||||||| || | || | ||||||||||||||||||||||| |
|
|
| T |
18775008 |
accaatggaggaggggtggggcgcatctcttgctgcccattttatttagat-gt--tcttgttatgttgtaataaaaagtg |
18774931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 6 - 117
Target Start/End: Complemental strand, 18784058 - 18783947
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
18784058 |
ccaagaaagctaaggaggccctaactcaattggtggaaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
18783959 |
T |
|
| Q |
106 |
accattggagga |
117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
18783958 |
accattggagga |
18783947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 6 - 186
Target Start/End: Complemental strand, 17465582 - 17465393
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatg------------gagggtagaatggt |
93 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||||| |||| || |||||| |
|
|
| T |
17465582 |
ccaagaaagctaaggaggccctaacacaattggtggcaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggaggataaaatggt |
17465483 |
T |
|
| Q |
94 |
catgtgcatcaaaccattggaggatgggtggggcggatctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| ||||||| |||||||||| | | ||||| || ||||||||||||||||||||||| |
|
|
| T |
17465482 |
catgtgcatcaaaccattggaggaggggtggggcgcatctcttgctgcccattt----tgtttagttgttcttgttatgttgtaataaaaagtg |
17465393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 6 - 150
Target Start/End: Complemental strand, 22825835 - 22825691
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||||||||||||| |
|
|
| T |
22825835 |
ccaagaaagctaaggaggccctaactcaatgggtggcaaaagtcttggagtccaaacctacactagaaagcattgaggataaaatggtcatgtgcatcaa |
22825736 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttat |
150 |
Q |
| |
|
||||||| |||| |||||||| | ||||||| ||||||||||||| |
|
|
| T |
22825735 |
accattgaaggaggggtggggtgcatctcttgctgcccattttat |
22825691 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 31 - 186
Target Start/End: Complemental strand, 22822076 - 22821924
Alignment:
| Q |
31 |
tcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaaaccattggaggatgggtggggcgga |
130 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||| |||||| |||| || |||||||||||||||||||||||||||||| | || ||||| | |
|
|
| T |
22822076 |
tcaattggtggcaaaagtcttggagtccaaacctacactagaaagcattgaggataaaatggtcatgtgcatcaaaccattggaggaggtgtagggcgca |
22821977 |
T |
|
| Q |
131 |
tctcttactgcccattttatatatctagttatt-ttgttatgttgtaataaaaagtg |
186 |
Q |
| |
|
|||||| |||||||||| ||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
22821976 |
tctcttgctgcccattt----tatttagttgttcttgttatgttgtaataaaaagtg |
22821924 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 6 - 150
Target Start/End: Original strand, 37259681 - 37259823
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
||||||||| ||||||||| |||||||||||||||||||||||||| ||| ||||| |||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
37259681 |
ccaagaaagttaaggaggccctaactcaattggtggcaaaagtctt--agtccaaacatacactagaaagcatggaggataaaatggtcatgtgcatcaa |
37259778 |
T |
|
| Q |
106 |
accattggaggatgggtggggcggatctcttactgcccattttat |
150 |
Q |
| |
|
|||||||||||| |||||||||| ||||||| ||||||||||||| |
|
|
| T |
37259779 |
accattggaggaggggtggggcgcatctcttgctgcccattttat |
37259823 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0671 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0671
Description:
Target: scaffold0671; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 6 - 117
Target Start/End: Original strand, 1287 - 1398
Alignment:
| Q |
6 |
ccaagaaagctaaggaggcgctaactcaattggtggcaaaagtcttggagttcaaacctacactaggaagcatggagggtagaatggtcatgtgcatcaa |
105 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| || |||||||||||||||||| |
|
|
| T |
1287 |
ccaagaaagctaaggaggtcctaactcaattggtggtaaaagtcttggagtccaaacctacactagaaagcatggaggataaaatggtcatgtgcatcaa |
1386 |
T |
|
| Q |
106 |
accattggagga |
117 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1387 |
accattggagga |
1398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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