View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6663_low_4 (Length: 382)
Name: NF6663_low_4
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6663_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 16 - 366
Target Start/End: Original strand, 3174425 - 3174774
Alignment:
| Q |
16 |
caacacaaataaaatgcacaaagagaacacgaacattttaacgtggaaaacccatcaatataatgataaaaactaagggtcgtcaagatcaaataaatag |
115 |
Q |
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| T |
3174425 |
caacacaaataaaatgcacaaagagaacacgaacattttaacgtggaaaacccatcaatataatgataaaaactaagggtcgtcgagatcaaataaatag |
3174524 |
T |
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| Q |
116 |
ctccactaaaaccaaataaaggtacataagagtctcaatgtgatgcatagtgcaacaaccatccaaatcaataaatcttgcaaataagaacaagaaagat |
215 |
Q |
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| T |
3174525 |
ctccactaaaaccaaataaaggtacataagagtctcaatgtgatgcatagtgcaacaaccatccaaatcaataaatcttgcaaataagaacaagaaagat |
3174624 |
T |
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| Q |
216 |
gaaaaacaataaccaaaagcaacttcttcggtaccaaacagatttctctctactcaaatcttgttttgttgcgaacttgctctgcaaacatccacgcgat |
315 |
Q |
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| T |
3174625 |
gaaaaacaataaccaaaagcaacttcttcggtaccaaacagatttctctctactcaaaccttgttttgttgcgaacttgctctgcaaacatccacacgat |
3174724 |
T |
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| Q |
316 |
tcaatggttaacgaatttgtaatcgctattttagtaagtcaagtttgagaa |
366 |
Q |
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| T |
3174725 |
tcaatggttaacgaatttgtaatc-atattttagtgagtcaagtttgagaa |
3174774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 40 - 153
Target Start/End: Original strand, 35201450 - 35201560
Alignment:
| Q |
40 |
gaacacgaacattttaacgtggaaaacccatcaatataatgataaaaactaagggtcgtcaagatcaaataaatagctccactaaaaccaaataaaggta |
139 |
Q |
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| T |
35201450 |
gaacaccaatattttaacgtggaaaaccc-tcaatgtaagggtaaaaaccacgggtcgtcctgaccaatgaaatagctccactataatcaaatatgggta |
35201548 |
T |
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| Q |
140 |
cataagagtctcaa |
153 |
Q |
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| T |
35201549 |
c--aagagtctcaa |
35201560 |
T |
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