View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6663_low_6 (Length: 377)

Name: NF6663_low_6
Description: NF6663
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6663_low_6
NF6663_low_6
[»] chr6 (10 HSPs)
chr6 (22-367)||(21941325-21941671)
chr6 (178-237)||(4922405-4922464)
chr6 (174-213)||(28757045-28757084)
chr6 (174-216)||(16390430-16390472)
chr6 (47-113)||(20118186-20118252)
chr6 (174-236)||(29069484-29069546)
chr6 (174-220)||(32524434-32524480)
chr6 (174-231)||(2617208-2617265)
chr6 (174-231)||(7281401-7281458)
chr6 (176-213)||(29283818-29283855)
[»] chr2 (18 HSPs)
chr2 (174-236)||(34191306-34191368)
chr2 (174-237)||(17142831-17142894)
chr2 (174-222)||(27412848-27412896)
chr2 (174-214)||(28644526-28644566)
chr2 (174-213)||(31815908-31815947)
chr2 (174-212)||(13922654-13922692)
chr2 (175-213)||(29809328-29809366)
chr2 (174-236)||(34977205-34977267)
chr2 (176-213)||(11591175-11591212)
chr2 (176-213)||(11603096-11603133)
chr2 (174-235)||(13394981-13395042)
chr2 (174-227)||(28202298-28202351)
chr2 (175-208)||(34117446-34117479)
chr2 (174-214)||(1244857-1244897)
chr2 (174-222)||(2256972-2257020)
chr2 (174-202)||(9064621-9064649)
chr2 (174-218)||(20680898-20680942)
chr2 (174-222)||(27152354-27152402)
[»] chr1 (18 HSPs)
chr1 (174-219)||(14768807-14768852)
chr1 (174-238)||(33153876-33153940)
chr1 (174-237)||(3573322-3573384)
chr1 (165-219)||(6094413-6094468)
chr1 (174-216)||(30678831-30678873)
chr1 (174-213)||(619429-619468)
chr1 (174-213)||(2889947-2889986)
chr1 (164-214)||(15729420-15729471)
chr1 (174-237)||(28832168-28832231)
chr1 (174-216)||(10292937-10292979)
chr1 (174-228)||(28039866-28039920)
chr1 (174-216)||(41573287-41573329)
chr1 (174-216)||(43284048-43284090)
chr1 (174-223)||(30003202-30003251)
chr1 (176-228)||(5468851-5468903)
chr1 (174-222)||(10480715-10480763)
chr1 (174-202)||(34083672-34083700)
chr1 (174-222)||(34766861-34766909)
[»] chr7 (14 HSPs)
chr7 (174-222)||(40187648-40187696)
chr7 (174-236)||(49172284-49172345)
chr7 (175-220)||(34809347-34809392)
chr7 (174-213)||(21136832-21136871)
chr7 (174-237)||(24559473-24559536)
chr7 (174-216)||(7388057-7388099)
chr7 (174-216)||(16355514-16355556)
chr7 (178-216)||(23172405-23172443)
chr7 (174-216)||(23221393-23221435)
chr7 (174-212)||(42753449-42753487)
chr7 (173-237)||(12320183-12320247)
chr7 (174-222)||(30296334-30296382)
chr7 (174-222)||(35666304-35666352)
chr7 (174-202)||(44454513-44454541)
[»] chr8 (10 HSPs)
chr8 (174-237)||(29376902-29376965)
chr8 (174-237)||(11708987-11709050)
chr8 (174-213)||(15079173-15079212)
chr8 (176-227)||(17521275-17521326)
chr8 (174-216)||(36919312-36919354)
chr8 (176-212)||(5032936-5032972)
chr8 (175-223)||(8442498-8442546)
chr8 (174-234)||(29186503-29186563)
chr8 (180-216)||(31511978-31512014)
chr8 (174-222)||(39821885-39821933)
[»] chr3 (16 HSPs)
chr3 (174-237)||(51250230-51250293)
chr3 (174-216)||(7464509-7464551)
chr3 (174-220)||(21967557-21967603)
chr3 (174-220)||(21989993-21990039)
chr3 (174-223)||(43796848-43796897)
chr3 (174-213)||(10922329-10922368)
chr3 (174-213)||(33771691-33771730)
chr3 (174-216)||(38898227-38898269)
chr3 (166-222)||(1757681-1757738)
chr3 (174-227)||(7829897-7829950)
chr3 (186-227)||(41087584-41087625)
chr3 (174-219)||(52543707-52543752)
chr3 (174-222)||(5186834-5186882)
chr3 (174-202)||(7738670-7738698)
chr3 (174-222)||(8942018-8942066)
chr3 (173-213)||(20079722-20079762)
[»] chr4 (19 HSPs)
chr4 (176-234)||(49579958-49580016)
chr4 (174-231)||(11940811-11940868)
chr4 (176-216)||(14197449-14197489)
chr4 (174-213)||(48171882-48171921)
chr4 (174-236)||(13121545-13121607)
chr4 (175-213)||(21318274-21318312)
chr4 (174-236)||(38374958-38375020)
chr4 (174-236)||(43034340-43034402)
chr4 (174-220)||(48955293-48955339)
chr4 (174-220)||(54151639-54151685)
chr4 (174-215)||(13984661-13984702)
chr4 (174-215)||(23171012-23171053)
chr4 (174-219)||(34595951-34595996)
chr4 (174-215)||(35851726-35851767)
chr4 (169-213)||(19908688-19908732)
chr4 (174-202)||(20043224-20043252)
chr4 (174-218)||(23937871-23937915)
chr4 (174-230)||(41329616-41329672)
chr4 (181-213)||(48067141-48067173)
[»] scaffold1063 (1 HSPs)
scaffold1063 (174-223)||(1071-1120)
[»] chr5 (15 HSPs)
chr5 (165-213)||(33645710-33645759)
chr5 (176-216)||(12159419-12159459)
chr5 (174-221)||(1512856-1512903)
chr5 (174-213)||(8639350-8639389)
chr5 (174-213)||(11720895-11720934)
chr5 (178-237)||(19647505-19647564)
chr5 (174-213)||(33654749-33654788)
chr5 (165-222)||(6488998-6489056)
chr5 (166-218)||(28447485-28447538)
chr5 (174-223)||(36818934-36818983)
chr5 (174-222)||(781864-781912)
chr5 (174-222)||(11694570-11694618)
chr5 (174-222)||(22498943-22498991)
chr5 (174-222)||(27721687-27721735)
chr5 (176-212)||(28600999-28601035)
[»] scaffold0262 (1 HSPs)
scaffold0262 (174-222)||(15942-15990)
[»] scaffold0008 (1 HSPs)
scaffold0008 (174-210)||(119570-119606)


Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 367
Target Start/End: Complemental strand, 21941671 - 21941325
Alignment:
Q  22 aatattcaaagagaaaaatgaggccaccaatcttaccgtaacgttgactaaaaaaccatgaggaagacatgtttgtttgggtttaatatttgctaaatca 121  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21941671 aatattcaaagagaaaaatgaggccaccaatcttaccataacgttgactaaaaaaccatgaggaagacatgtttgtttgggtttaatatttgctaaatca 21941572  T
Q  122 tttttaaaaaggtgtgggtcattttttataaagacacaagtggtgtgtcctctgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtct 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||    
T  21941571 tttttaaaaaggtgtgggtcattttttataaagacacaagtggtgtgtcctctgagcttaactcagttgatagggacaatgcgtaatatatgtaaggtct 21941472  T
Q  222 gaagtttaaatcccgaatacaccagaaaagacacaagtggtgtgggtcacttagaattcgtaaaatgattctattctatttaattaagttatgtgggact 321  Q
    | |||||||| ||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
T  21941471 ggagtttaaa-cccgactacaccaggaaagacacaagtggtgtgggtcacttagaagtcgtaaaatgatcctattctatttaattaagttatgtgggact 21941373  T
Q  322 ggtcaatgggtaagttgt--tctcattagtgtttagcatttacctttg 367  Q
    ||||||||||||||||||  ||||||||||||||||||||||||||||    
T  21941372 ggtcaatgggtaagttgtactctcattagtgtttagcatttacctttg 21941325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 4922464 - 4922405
Alignment:
Q  178 cttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    ||||||| |||||||||||| ||||| ||||||||| || || ||| |||||||||||||    
T  4922464 cttaacttagttggtagggataatgtataatatatgcaacgtatgaggtttaaatcccga 4922405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 28757084 - 28757045
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  28757084 tgagcttaactcagttggtaaggacaatgtataatatatg 28757045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 16390430 - 16390472
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||| ||||||||||||||||||||  ||||||||||||    
T  16390430 tgagcttacctcagttggtagggacaatgcataatatatgtaa 16390472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 113
Target Start/End: Original strand, 20118186 - 20118252
Alignment:
Q  47 accaatcttaccgtaacgttgactaaaaaaccatgaggaagacatgtttgtttgggtttaatatttg 113  Q
    |||||||||||| |||| ||||||| |||||||||||  | | || ||||||||||||| |||||||    
T  20118186 accaatcttaccataacattgactagaaaaccatgagctaaatatttttgtttgggttttatatttg 20118252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 29069484 - 29069546
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||| |||||||| |||||||||||  ||||||||| ||||||||| ||| ||| ||||    
T  29069484 tgagcttagctcagttgatagggacaatgcataatatatgaaaagtctgaggttcaaaccccg 29069546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 32524480 - 32524434
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    ||||||||||||| |||||||||||||||  ||||||||| ||||||    
T  32524480 tgagcttaactcaattggtagggacaatgcataatatatgcaaagtc 32524434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 2617265 - 2617208
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaa 231  Q
    ||||||||||| ||||||||| |||||||  |||||||||||| || ||| |||||||    
T  2617265 tgagcttaacttagttggtagagacaatgcataatatatgtaaggtttgaggtttaaa 2617208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 7281458 - 7281401
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaa 231  Q
    |||| ||||||| |||||||| |||||||| ||||||||||||  |||| ||||||||    
T  7281458 tgagtttaactcggttggtagagacaatgtataatatatgtaagatctggagtttaaa 7281401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 29283818 - 29283855
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||| |||||||| |||||||||    
T  29283818 agcttaactcagttggtagagacaatgtataatatatg 29283855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 34191368 - 34191306
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||| ||||||||||||||||||||  ||||||||||||||||| | ||| ||||||||    
T  34191368 tgagcttagctcagttggtagggacaatgcataatatatgtaaagtctaaggttcaaatcccg 34191306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 17142831 - 17142894
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||| |||||||||||| |||||||| ||||||||| |||||||| |||| ||| |||||    
T  17142831 tgagcttagctcagttggtagtgacaatgtataatatatgcaaagtctggagttcaaaccccga 17142894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 27412896 - 27412848
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    ||||||||||||||||||||| |||||||  |||||||||||| |||||    
T  27412896 tgagcttaactcagttggtagagacaatgcataatatatgtaaggtctg 27412848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 174 - 214
Target Start/End: Original strand, 28644526 - 28644566
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgt 214  Q
    |||||||||||||||||||||||||||||  ||||||||||    
T  28644526 tgagcttaactcagttggtagggacaatgcataatatatgt 28644566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 31815947 - 31815908
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  31815947 tgagcttaactcagttggtagggacaatgcataatatatg 31815908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 13922692 - 13922654
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatat 212  Q
    |||||||||||||||||||||||||||||  ||||||||    
T  13922692 tgagcttaactcagttggtagggacaatgcataatatat 13922654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Original strand, 29809328 - 29809366
Alignment:
Q  175 gagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  29809328 gagcttaactcagttggtagggacaatgcataatatatg 29809366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 34977205 - 34977267
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||||||||||||||| ||||||||  ||||||||| || ||| | |||||||| ||||    
T  34977205 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtccggagtttaaaccccg 34977267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 11591175 - 11591212
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  11591175 agcttaactcagttggtatggacagtgtgtaatatatg 11591212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 213
Target Start/End: Original strand, 11603096 - 11603133
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  11603096 agcttaactcagttggtatggacagtgtgtaatatatg 11603133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 235
Target Start/End: Complemental strand, 13395042 - 13394981
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatccc 235  Q
    |||||||| ||||||||||||||||||||  | ||||||| || ||| ||||||| ||||||    
T  13395042 tgagcttagctcagttggtagggacaatgcatgatatatgcaaggtcagaagtttgaatccc 13394981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 28202298 - 28202351
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtt 227  Q
    |||||||| |||||||| |||||||||||  |||||||||||| ||| ||||||    
T  28202298 tgagcttagctcagttgatagggacaatgcataatatatgtaaggtccgaagtt 28202351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 175 - 208
Target Start/End: Original strand, 34117446 - 34117479
Alignment:
Q  175 gagcttaactcagttggtagggacaatgtgtaat 208  Q
    ||||||||||||||||||||||||||||| ||||    
T  34117446 gagcttaactcagttggtagggacaatgtataat 34117479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 214
Target Start/End: Complemental strand, 1244897 - 1244857
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgt 214  Q
    |||||||||||||||||||| ||||||| | ||||||||||    
T  1244897 tgagcttaactcagttggtacggacaatatataatatatgt 1244857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 2256972 - 2257020
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||| ||||||||  ||||||||| || |||||    
T  2256972 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtctg 2257020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 9064649 - 9064621
Alignment:
Q  174 tgagcttaactcagttggtagggacaatg 202  Q
    |||||||||||||||||||||||||||||    
T  9064649 tgagcttaactcagttggtagggacaatg 9064621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 20680898 - 20680942
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaag 218  Q
    ||||||||||||| |||||||||||| ||  ||||||||||||||    
T  20680898 tgagcttaactcatttggtagggacattgcataatatatgtaaag 20680942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 27152354 - 27152402
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||||||| ||||  ||||||||| || |||||    
T  27152354 tgagcttaactcagttggtagggataatgcataatatatgcaaggtctg 27152402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 219
Target Start/End: Original strand, 14768807 - 14768852
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagt 219  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||    
T  14768807 tgagcttgactcagttggtagggacaatgtataatatatgtaaagt 14768852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 33153940 - 33153876
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccgaa 238  Q
    |||||||||||||||||||||||||||||  |||||||||||| ||| || ||| ||| ||||||    
T  33153940 tgagcttaactcagttggtagggacaatgcataatatatgtaaggtccgaggttcaaaccccgaa 33153876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 3573384 - 3573322
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||||||||||||||||| ||||||  |||||||||||| || || ||||||||||||||    
T  3573384 tgagcttaactcagttggtaggaacaatgcataatatatgtaaggtttg-agtttaaatcccga 3573322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 165 - 219
Target Start/End: Original strand, 6094413 - 6094468
Alignment:
Q  165 tgtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagt 219  Q
    ||||||||| |||||||||||||||||||| ||| ||||| |||||||||||||||    
T  6094413 tgtgtcctcgtgagcttaactcagttggtatggataatgtataatatatgtaaagt 6094468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 30678873 - 30678831
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  30678873 tgagcttaactcagttggtagggacaatgcataatatatgtaa 30678831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 619468 - 619429
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  619468 tgagcttaactcagttggtagagacaatgtataatatatg 619429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 2889986 - 2889947
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  2889986 tgagcttaactcagttggtagggacaatgcataatatatg 2889947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 164 - 214
Target Start/End: Original strand, 15729420 - 15729471
Alignment:
Q  164 gtgtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatgt 214  Q
    |||||||||| ||||||||||||||||||||| |||||||  ||||||||||    
T  15729420 gtgtgtcctcgtgagcttaactcagttggtagagacaatgcataatatatgt 15729471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 28832231 - 28832168
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||||||||||||||| | ||||||  ||||||||| || |||||| ||| |||||||||    
T  28832231 tgagcttaactcagttggtatgaacaatgcataatatatgcaaggtctgaggttcaaatcccga 28832168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 10292937 - 10292979
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    ||||||||||||||||| |||||||||||  ||||||||||||    
T  10292937 tgagcttaactcagttgatagggacaatgcataatatatgtaa 10292979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 28039920 - 28039866
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagttt 228  Q
    |||||||||||||||||||| ||||||||  ||||||||| || |||||| ||||    
T  28039920 tgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctgaggttt 28039866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 41573329 - 41573287
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||| ||||||||||||||||||||||||  ||||||||||||    
T  41573329 tgagtttaactcagttggtagggacaatgcataatatatgtaa 41573287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 43284090 - 43284048
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||| |||| |||||||| ||||||||||||    
T  43284090 tgagcttaactcagttagtagagacaatgtataatatatgtaa 43284048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 30003202 - 30003251
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctga 223  Q
    ||||||||| |||||||||| ||||||||  |||||||||||||| ||||    
T  30003202 tgagcttaattcagttggtatggacaatgcataatatatgtaaagactga 30003251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 228
Target Start/End: Original strand, 5468851 - 5468903
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagttt 228  Q
    ||||||||||||||| |||| | ||||| ||||||||||||||| || |||||    
T  5468851 agcttaactcagttgataggaataatgtataatatatgtaaagtttggagttt 5468903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 10480715 - 10480763
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||| ||||| ||||||||  |||||||||||| |||||    
T  10480715 tgagcttaactcagatggtaaggacaatgcataatatatgtaaggtctg 10480763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 34083700 - 34083672
Alignment:
Q  174 tgagcttaactcagttggtagggacaatg 202  Q
    |||||||||||||||||||||||||||||    
T  34083700 tgagcttaactcagttggtagggacaatg 34083672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 34766861 - 34766909
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||| ||||||||| ||||| ||| || |||||    
T  34766861 tgagcttaactcagttggtatggacaatgtataatacatgcaaggtctg 34766909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 40187696 - 40187648
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||||||||||||  |||||||||||| |||||    
T  40187696 tgagcttaactcagttggtagggacaatgcataatatatgtaaggtctg 40187648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 49172345 - 49172284
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||| |||||||| |||||||||||  |||||||||||| ||||| |||||||||||||    
T  49172345 tgagcttagctcagttgatagggacaatgc-taatatatgtaaggtctgcagtttaaatcccg 49172284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 34809347 - 34809392
Alignment:
Q  175 gagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    ||||||||||||||| ||||||||||||  ||||||||||||||||    
T  34809347 gagcttaactcagttagtagggacaatgcataatatatgtaaagtc 34809392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 21136832 - 21136871
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  21136832 tgagcttaactcagttggtatggacaatgtataatatatg 21136871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 24559536 - 24559473
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||||||||||| ||||| ||||||  ||||||||| ||| ||| | |||||||||||||    
T  24559536 tgagcttaactcagttagtaggaacaatgcataatatatgcaaaatctaaggtttaaatcccga 24559473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 7388099 - 7388057
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    ||||||||||||||||||| |||||||||  ||||||||||||    
T  7388099 tgagcttaactcagttggttgggacaatgcataatatatgtaa 7388057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 16355514 - 16355556
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    ||||||||||||||||||||| |||| ||| ||||||||||||    
T  16355514 tgagcttaactcagttggtagagacattgtataatatatgtaa 16355556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 216
Target Start/End: Original strand, 23172405 - 23172443
Alignment:
Q  178 cttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||| ||||||| ||||||||||||    
T  23172405 cttaactcagttggtaggaacaatgtataatatatgtaa 23172443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 23221393 - 23221435
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    ||||||||||||||||||||| |||||||  ||||||||||||    
T  23221393 tgagcttaactcagttggtagagacaatgcataatatatgtaa 23221435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 212
Target Start/End: Complemental strand, 42753487 - 42753449
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatat 212  Q
    ||||||||||||| |||||||||||||||| ||||||||    
T  42753487 tgagcttaactcaattggtagggacaatgtataatatat 42753449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 237
Target Start/End: Original strand, 12320183 - 12320247
Alignment:
Q  173 ctgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    ||||||||| ||||||||||||||||||||  |||| |||| || |||| ||||| ||| |||||    
T  12320183 ctgagcttagctcagttggtagggacaatgcataatttatgcaaggtctcaagttcaaaccccga 12320247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 30296334 - 30296382
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||| ||||||||||| ||||||||| ||||||||| || |||||    
T  30296334 tgagcttagctcagttggtaaggacaatgtataatatatgcaaggtctg 30296382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 35666304 - 35666352
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||| ||||||| ||||||||  |||||||||||| |||||    
T  35666304 tgagcttaactcggttggtaaggacaatgcataatatatgtaatgtctg 35666352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 44454513 - 44454541
Alignment:
Q  174 tgagcttaactcagttggtagggacaatg 202  Q
    |||||||||||||||||||||||||||||    
T  44454513 tgagcttaactcagttggtagggacaatg 44454541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 29376902 - 29376965
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||||||||||||||| |||||||| |||||||||| || ||||| |||| ||| |||||    
T  29376902 tgagcttaactcagttggtatggacaatgcgtaatatatgcaaggtctggagttcaaaccccga 29376965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 237
Target Start/End: Original strand, 11708987 - 11709050
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||| ||||||||||||||||||||  ||||||||| || ||| |||||| ||| |||||    
T  11708987 tgagcttagctcagttggtagggacaatgcataatatatgcaaggtccgaagttcaaaccccga 11709050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 15079212 - 15079173
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  15079212 tgagcttaactcagttggtagggacaatgcataatatatg 15079173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 17521326 - 17521275
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtt 227  Q
    ||||||||||||||| || ||||||||| |||||||| ||||||||| ||||    
T  17521326 agcttaactcagttgataaggacaatgtataatatatataaagtctggagtt 17521275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 36919312 - 36919354
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||||| | ||||||| ||||||||||||    
T  36919312 tgagcttaactcagttggtaagaacaatgtataatatatgtaa 36919354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Complemental strand, 5032972 - 5032936
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatat 212  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  5032972 agcttaactcagttggttgggacaatgtataatatat 5032936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 175 - 223
Target Start/End: Complemental strand, 8442546 - 8442498
Alignment:
Q  175 gagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctga 223  Q
    ||||||||||||||||||| ||||||||  ||||||||| || ||||||    
T  8442546 gagcttaactcagttggtaaggacaatgcataatatatgcaaggtctga 8442498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 29186503 - 29186563
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcc 234  Q
    |||||| ||||||||||||| |||||||| |||||||||| || || ||| ||| ||||||    
T  29186503 tgagctcaactcagttggtaaggacaatgcgtaatatatgcaaggtatgaggttcaaatcc 29186563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 216
Target Start/End: Original strand, 31511978 - 31512014
Alignment:
Q  180 taactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||||||||  ||||||||||||    
T  31511978 taactcagttggtagggacaatgcataatatatgtaa 31512014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 39821885 - 39821933
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||| ||||||||||||||||||||  ||||||||| || |||||    
T  39821885 tgagcttagctcagttggtagggacaatgcataatatatgcaaggtctg 39821933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 237
Target Start/End: Complemental strand, 51250293 - 51250230
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||||||||||||||| ||||||||| ||||||||| || | |||||||| ||| |||||    
T  51250293 tgagcttaactcagttggtaaggacaatgtataatatatgcaaggcctgaagttcaaaccccga 51250230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 7464551 - 7464509
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||||||||||||||  ||||||||||||    
T  7464551 tgagcttaactcagttggtagggacaatgcataatatatgtaa 7464509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 21967557 - 21967603
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  21967557 tgagcttaactcagttggtaaggacaatgtataatatatgcaaagtc 21967603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 21989993 - 21990039
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    |||||||||||||||||||| ||||||||| ||||||||| ||||||    
T  21989993 tgagcttaactcagttggtaaggacaatgtataatatatgcaaagtc 21990039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 43796897 - 43796848
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctga 223  Q
    |||||||||||||||||||| ||||||||| ||||| ||| |||||||||    
T  43796897 tgagcttaactcagttggtatggacaatgtataatacatgcaaagtctga 43796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 10922368 - 10922329
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  10922368 tgagcttaactcagttggtagggacaatgcataatatatg 10922329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 33771691 - 33771730
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||| ||||||||| |||||||||    
T  33771691 tgagcttaactcagttggtaaggacaatgtataatatatg 33771730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 38898269 - 38898227
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||| ||||||||||| ||||||||| ||||||||||||    
T  38898269 tgagcttatctcagttggtaaggacaatgtataatatatgtaa 38898227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 222
Target Start/End: Complemental strand, 1757738 - 1757681
Alignment:
Q  166 gtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||| |||||||||||||||||||||| ||||||  ||||||||| || |||||    
T  1757738 gtgtcctcgtgagcttaactcagttggtaggaacaatgcataatatatgcaacgtctg 1757681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Original strand, 7829897 - 7829950
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtt 227  Q
    |||| |||||||||||| || ||||||||  |||||||||||| ||||||||||    
T  7829897 tgagtttaactcagttgatatggacaatgcataatatatgtaaggtctgaagtt 7829950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 41087584 - 41087625
Alignment:
Q  186 agttggtagggacaatgtgtaatatatgtaaagtctgaagtt 227  Q
    |||||||| ||||||||  |||||||||||||||||||||||    
T  41087584 agttggtaaggacaatgcataatatatgtaaagtctgaagtt 41087625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 52543752 - 52543707
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagt 219  Q
    ||||||||||| |||||||||| ||||||  |||||||||||||||    
T  52543752 tgagcttaacttagttggtaggaacaatgcataatatatgtaaagt 52543707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 5186834 - 5186882
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||| ||||||||||||||  ||||||||| || |||||    
T  5186834 tgagcttaactcagctggtagggacaatgcttaatatatgcaaggtctg 5186882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Original strand, 7738670 - 7738698
Alignment:
Q  174 tgagcttaactcagttggtagggacaatg 202  Q
    |||||||||||||||||||||||||||||    
T  7738670 tgagcttaactcagttggtagggacaatg 7738698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 8942018 - 8942066
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||| | ||||||  ||||||||| ||||||||    
T  8942018 tgagcttaactcagttggtatgaacaatgcataatatatgcaaagtctg 8942066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Original strand, 20079722 - 20079762
Alignment:
Q  173 ctgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||| |||| |||||||| |||||||||    
T  20079722 ctgagcttaactcagttagtagagacaatgtataatatatg 20079762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 176 - 234
Target Start/End: Original strand, 49579958 - 49580016
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcc 234  Q
    ||||||||||| |||||||||||||||| ||||||||| || || |||| |||||||||    
T  49579958 agcttaactcaattggtagggacaatgtataatatatgcaaggtttgaattttaaatcc 49580016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 11940868 - 11940811
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaa 231  Q
    ||||||||||| |||||||||||| ||||  || |||||||||||| |||||||||||    
T  11940868 tgagcttaacttagttggtagggataatgcatagtatatgtaaagtttgaagtttaaa 11940811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 14197489 - 14197449
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    |||||||||||||||||||||||||||  ||||||||||||    
T  14197489 agcttaactcagttggtagggacaatgcataatatatgtaa 14197449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 48171882 - 48171921
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||||| |||||||| |||||||||    
T  48171882 tgagcttaactcagttggtagagacaatgtataatatatg 48171921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 13121545 - 13121607
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||| || |||||||||||||||||  ||||||||| || |||||||||| ||| ||||    
T  13121545 tgagcttagcttagttggtagggacaatgcataatatatgcaaggtctgaagttcaaaccccg 13121607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 175 - 213
Target Start/End: Complemental strand, 21318312 - 21318274
Alignment:
Q  175 gagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||||||||||||  |||||||||    
T  21318312 gagcttaactcagttggtagggacaatgcataatatatg 21318274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 38374958 - 38375020
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    ||||||||||| |||||||||||||||||  ||||||||| || ||||| |||| ||| ||||    
T  38374958 tgagcttaacttagttggtagggacaatgcataatatatgcaaggtctggagttcaaaccccg 38375020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 43034402 - 43034340
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccg 236  Q
    |||||||||||||||||||| ||||||||  ||||||||| || |||||| ||| ||| ||||    
T  43034402 tgagcttaactcagttggtatggacaatgcataatatatgcaaggtctgaggttcaaaccccg 43034340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Original strand, 48955293 - 48955339
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    |||||||| ||||||||||| |||||||| |||||||||| ||||||    
T  48955293 tgagcttatctcagttggtaaggacaatgcgtaatatatgcaaagtc 48955339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 220
Target Start/End: Complemental strand, 54151685 - 54151639
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtc 220  Q
    |||||||||||||||||||| ||| ||||| ||||||||| ||||||    
T  54151685 tgagcttaactcagttggtaaggataatgtataatatatgcaaagtc 54151639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 13984702 - 13984661
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgta 215  Q
    |||||||||||||||||||||| ||||||  |||||||||||    
T  13984702 tgagcttaactcagttggtaggaacaatgcataatatatgta 13984661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Original strand, 23171012 - 23171053
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgta 215  Q
    ||||||||||||||||| |||| ||||||| |||||||||||    
T  23171012 tgagcttaactcagttgttaggaacaatgtataatatatgta 23171053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 219
Target Start/End: Complemental strand, 34595996 - 34595951
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagt 219  Q
    |||| ||||||||||||||| ||||||||  |||||||||||||||    
T  34595996 tgagtttaactcagttggtaaggacaatgcataatatatgtaaagt 34595951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 215
Target Start/End: Complemental strand, 35851767 - 35851726
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgta 215  Q
    |||||||||||||||||||||||||| ||  |||||||||||    
T  35851767 tgagcttaactcagttggtagggacattgcataatatatgta 35851726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 169 - 213
Target Start/End: Original strand, 19908688 - 19908732
Alignment:
Q  169 tcctctgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||| |||||||||||||||||||| ||||||||  |||||||||    
T  19908688 tcctgtgagcttaactcagttggtaaggacaatgcataatatatg 19908732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 202
Target Start/End: Complemental strand, 20043252 - 20043224
Alignment:
Q  174 tgagcttaactcagttggtagggacaatg 202  Q
    |||||||||||||||||||||||||||||    
T  20043252 tgagcttaactcagttggtagggacaatg 20043224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 218
Target Start/End: Original strand, 23937871 - 23937915
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaag 218  Q
    ||||||||||||||||||| |||||| ||| |||||| |||||||    
T  23937871 tgagcttaactcagttggtcgggacattgtataatatttgtaaag 23937915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 41329616 - 41329672
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaa 230  Q
    |||||||||||||||||||| | | ||||| || ||||||||| |||||| ||||||    
T  41329616 tgagcttaactcagttggtacgaataatgtatagtatatgtaaggtctgacgtttaa 41329672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 213
Target Start/End: Original strand, 48067141 - 48067173
Alignment:
Q  181 aactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||||||||| |||||||||    
T  48067141 aactcagttggtagggacaatgtataatatatg 48067173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 223
Target Start/End: Complemental strand, 1120 - 1071
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctga 223  Q
    |||||||||||||||| ||||||||||||  |||||||||||| ||||||    
T  1120 tgagcttaactcagttagtagggacaatgcataatatatgtaaggtctga 1071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 165 - 213
Target Start/End: Complemental strand, 33645759 - 33645710
Alignment:
Q  165 tgtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||| |||||||||||||||||||| ||||||||| |||||||||    
T  33645759 tgtgtcctcgtgagcttaactcagttggtatggacaatgtataatatatg 33645710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 176 - 216
Target Start/End: Complemental strand, 12159459 - 12159419
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatatgtaa 216  Q
    ||||||||||||||||||| |||||||| ||||||||||||    
T  12159459 agcttaactcagttggtagagacaatgtataatatatgtaa 12159419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 1512856 - 1512903
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtct 221  Q
    |||||||||||||||| ||||||||||||  |||||||||||| ||||    
T  1512856 tgagcttaactcagttagtagggacaatgcataatatatgtaaggtct 1512903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Complemental strand, 8639389 - 8639350
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    ||||||||||||||||| || |||||||||||||||||||    
T  8639389 tgagcttaactcagttgataaggacaatgtgtaatatatg 8639350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 11720895 - 11720934
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  11720895 tgagcttaactcagttggtagggacaatgcataatatatg 11720934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 237
Target Start/End: Complemental strand, 19647564 - 19647505
Alignment:
Q  178 cttaactcagttggtagggacaatgtgtaatatatgtaaagtctgaagtttaaatcccga 237  Q
    |||||||| | ||||||||||||||| |||||||||||| |||||  ||| |||||||||    
T  19647564 cttaactcggatggtagggacaatgtataatatatgtaaggtctggggttcaaatcccga 19647505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 213
Target Start/End: Original strand, 33654749 - 33654788
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatg 213  Q
    |||||||||||||||||||||||||||||  |||||||||    
T  33654749 tgagcttaactcagttggtagggacaatgcataatatatg 33654788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 165 - 222
Target Start/End: Original strand, 6488998 - 6489056
Alignment:
Q  165 tgtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    ||||||||| |||||||| ||||||||||||||||||||  ||||||||| || |||||    
T  6488998 tgtgtcctcgtgagcttagctcagttggtagggacaatgcataatatatgcaaggtctg 6489056  T

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Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 28447485 - 28447538
Alignment:
Q  166 gtgtcctc-tgagcttaactcagttggtagggacaatgtgtaatatatgtaaag 218  Q
    |||||||| |||| ||||||||||| ||||||||||||  ||||||||||||||    
T  28447485 gtgtcctcgtgagtttaactcagttagtagggacaatgcataatatatgtaaag 28447538  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 223
Target Start/End: Original strand, 36818934 - 36818983
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctga 223  Q
    |||||||| ||||||||||| ||||||| | |||||||| ||||||||||    
T  36818934 tgagcttagctcagttggtatggacaatatataatatatataaagtctga 36818983  T

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Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 781864 - 781912
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    ||||||||||||||||| |||||||||||| ||| ||||| || |||||    
T  781864 tgagcttaactcagttgatagggacaatgtataaaatatgcaaggtctg 781912  T

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Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 11694618 - 11694570
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||| | ||||||||||| ||||||||| ||||||||| ||||||||    
T  11694618 tgagctcagctcagttggtatggacaatgtataatatatgaaaagtctg 11694570  T

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Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Original strand, 22498943 - 22498991
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||||||||||||||| ||||||||  ||||||||| || |||||    
T  22498943 tgagcttaactcagttggtaaggacaatgcataatatatgcaaggtctg 22498991  T

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Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 27721735 - 27721687
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    |||||||| ||||||||||||| ||||||  ||||||||| ||||||||    
T  27721735 tgagcttagctcagttggtaggaacaatgcataatatatgcaaagtctg 27721687  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 176 - 212
Target Start/End: Original strand, 28600999 - 28601035
Alignment:
Q  176 agcttaactcagttggtagggacaatgtgtaatatat 212  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  28600999 agcttaactcagttggtaaggacaatgtataatatat 28601035  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 15990 - 15942
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatatatgtaaagtctg 222  Q
    ||||||||||||| |||||| ||||||||| ||||||||| || |||||    
T  15990 tgagcttaactcaattggtaaggacaatgtataatatatgcaaggtctg 15942  T

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Target: scaffold0008 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 210
Target Start/End: Original strand, 119570 - 119606
Alignment:
Q  174 tgagcttaactcagttggtagggacaatgtgtaatat 210  Q
    ||||||||||||||||| |||||||||||| ||||||    
T  119570 tgagcttaactcagttgatagggacaatgtataatat 119606  T

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