View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_high_12 (Length: 267)
Name: NF6664_high_12
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_high_12 |
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| [»] chr4 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 16 - 267
Target Start/End: Original strand, 29504115 - 29504362
Alignment:
| Q |
16 |
acatcatccacaattgctgcatccgcgaccgcaatttaataccataaattactcaattcaaattaaagaagaagnnnnnnncattgttattaacgccttc |
115 |
Q |
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| T |
29504115 |
acatcaaccacaattgctgcatccgcgaccgcaatttaaaaccataaattactcaattcaaattaaaaaaaaaaaaaaaacaattgttattaacgctttc |
29504214 |
T |
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| Q |
116 |
caccattaccactagaatgaatgaattcagtaaatatgcatagcactctgaatagaataagagataaaccttggtgaagacgccaacgccgcattcaaat |
215 |
Q |
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| T |
29504215 |
caccattaccaccagaat----gaattcagtaaatatgcatagcactctgaatagaataagagataaaccttggtgaagacgccaacgccgcattcaaat |
29504310 |
T |
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| Q |
216 |
ccaaccttagcaagaaaaagatcatcagcaaggagacgctctttaaaaccac |
267 |
Q |
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| T |
29504311 |
ccaaccttagcaagaaaaagatcatcagcaagtagacgctctttaaaaccac |
29504362 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 16968591 - 16968673
Alignment:
| Q |
185 |
cttggtgaagacgccaacgccgcattcaaatccaaccttagcaagaaaaagatcatcagcaaggagacgctctttaaaaccac |
267 |
Q |
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| T |
16968591 |
cttggtgaagacgctgacgccgcattcaaatccaaccttagcataaaaaagatcatcagcaagaagacgctctttaaaaccac |
16968673 |
T |
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