View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_high_13 (Length: 258)
Name: NF6664_high_13
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_high_13 |
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Alignment Details
Target: chr6 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 243
Target Start/End: Original strand, 30855752 - 30855979
Alignment:
| Q |
21 |
catggaaattgagaaagattagtt-taaattaacaacctttgaaataatatccaatccgttaatgcataaattcccaactagacagcaaaaacagttatc |
119 |
Q |
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| T |
30855752 |
catggaaattgagaaagattagctataaattaacaacctttgaaataatatccaatccgttaatgcataaattcccaactagacagcaaaaacagttatc |
30855851 |
T |
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| Q |
120 |
ataacataagatatatcaagaac----caaagcaattgaaccggtcatagaacgcagcccatattgaagattttagcaaacttacgttcagtatatgatt |
215 |
Q |
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||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30855852 |
ataacataagatatatcaagaacgaaccaaagcaattgacccggtcatagaacgcagcccatattgaagattttagcaaacttacgttcagtatatgatt |
30855951 |
T |
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| Q |
216 |
ataaatatcattaacagccttctctgtg |
243 |
Q |
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|||||||||||||||||||||||||||| |
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| T |
30855952 |
ataaatatcattaacagccttctctgtg |
30855979 |
T |
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