View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6664_high_2 (Length: 610)

Name: NF6664_high_2
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6664_high_2
NF6664_high_2
[»] chr1 (3 HSPs)
chr1 (160-600)||(26831756-26832197)
chr1 (1-118)||(26832206-26832323)
chr1 (234-286)||(10629409-10629461)
[»] chr6 (1 HSPs)
chr6 (237-274)||(3218632-3218669)
[»] chr8 (1 HSPs)
chr8 (227-275)||(24074542-24074590)
[»] chr5 (1 HSPs)
chr5 (227-275)||(14487597-14487645)
[»] chr4 (1 HSPs)
chr4 (227-275)||(42488745-42488793)
[»] chr3 (1 HSPs)
chr3 (232-276)||(31435511-31435555)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 160 - 600
Target Start/End: Complemental strand, 26832197 - 26831756
Alignment:
Q  160 gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggactt 259  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26832197 gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt 26832098  T
Q  260 ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac 359  Q
    ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||| |||||||||||||||    
T  26832097 ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacac 26831998  T
Q  360 -ttgaagaagagactaatctcctactaatacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta 458  Q
     |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831997 attgaagaagagactaatctcctactattacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta 26831898  T
Q  459 ttagtaatgaacggattaattaatatttgtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag 558  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26831897 ttagtaatgaactgattaattaatatttgtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag 26831798  T
Q  559 gttgttgaattaattaattaacgatgtgtgattttccctttg 600  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  26831797 gttgttgaattaattaattaacgatgtgtgattttccctttg 26831756  T

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Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 26832323 - 26832206
Alignment:
Q  1 ttcctttggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26832323 ttcctttggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtca 26832224  T
Q  101 tgagaagtcatcgtcatg 118  Q
    ||||||||||||||||||    
T  26832223 tgagaagtcatcgtcatg 26832206  T

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Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
Q  234 ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt 286  Q
    ||||||| |||||||||||||||| || || |||||||||||| |||||||||    
T  10629409 ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt 10629461  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
Q  237 gttgaggttcgaacctcggacttctcacttattcacct 274  Q
    |||||||||||||||||| |||||||||||||||||||    
T  3218632 gttgaggttcgaacctcgaacttctcacttattcacct 3218669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
Q  227 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 275  Q
    |||| |||||||||| |||||||||||||||  ||||||||||||||||    
T  24074542 atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt 24074590  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 14487597 - 14487645
Alignment:
Q  227 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 275  Q
    |||| ||||||||| |||||||||||||||  || ||||||||||||||    
T  14487597 atatgtaggggttggggttcgaacctcggatatcccacttattcacctt 14487645  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 42488745 - 42488793
Alignment:
Q  227 atatctaggggttgaggttcgaacctcggacttctcacttattcacctt 275  Q
    |||| ||||||||| ||||| ||||||||||  ||||||||||||||||    
T  42488745 atatgtaggggttggggttcaaacctcggacgcctcacttattcacctt 42488793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 31435555 - 31435511
Alignment:
Q  232 taggggttgaggttcgaacctcggacttctcacttattcaccttt 276  Q
    ||||||||| |||||||||||||||| || |||||||||| ||||    
T  31435555 taggggttggggttcgaacctcggacatcccacttattcatcttt 31435511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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