View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_high_4 (Length: 392)
Name: NF6664_high_4
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_high_4 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 327; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 20168983 - 20168612
Alignment:
| Q |
10 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
109 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168983 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctctacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
20168884 |
T |
|
| Q |
110 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
209 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168883 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
20168784 |
T |
|
| Q |
210 |
ggattgaattgatttttaaattgaca--------aagtttaacactgttaatcctttagagactgattcatggtattcttcttcctcacatgaactccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20168783 |
ggattgaattgatttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattcatggtattcttcttcctcacatgaactccat |
20168684 |
T |
|
| Q |
302 |
cgtgatccctcatgttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaaccacc |
373 |
Q |
| |
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||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
20168683 |
cgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaaccacc |
20168612 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 10 - 236
Target Start/End: Original strand, 28583792 - 28584006
Alignment:
| Q |
10 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
109 |
Q |
| |
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||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |
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|
| T |
28583792 |
gacatcatcacatgctttctccactcttgatcacctgatccctttctcctccacctccttcattcccctttcaattt-ccagtttcattgcaaaatccat |
28583890 |
T |
|
| Q |
110 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
209 |
Q |
| |
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|| ||| ||||||| ||||||||| | |||| | ||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
28583891 |
aac--caca-----attttgacgagattaatca----taacataggatctttctaaaattgaagaaaaaattaattaattaaaattagaatcacaacaaa |
28583979 |
T |
|
| Q |
210 |
-ggattgaattgatttttaaattgacaa |
236 |
Q |
| |
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|||||||| ||| |||||||||||||| |
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|
| T |
28583980 |
gggattgaa-tgaattttaaattgacaa |
28584006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 48 - 85
Target Start/End: Original strand, 9391849 - 9391886
Alignment:
| Q |
48 |
tccctttctcctccacctccttcattcccctttcaatt |
85 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||| |
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|
| T |
9391849 |
tccctttctcctccacctttttcattcccctttcaatt |
9391886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 327; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 10 - 373
Target Start/End: Complemental strand, 44390692 - 44390321
Alignment:
| Q |
10 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
109 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390692 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctctacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
44390593 |
T |
|
| Q |
110 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44390592 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
44390493 |
T |
|
| Q |
210 |
ggattgaattgatttttaaattgaca--------aagtttaacactgttaatcctttagagactgattcatggtattcttcttcctcacatgaactccat |
301 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44390492 |
ggattgaattgatttttaaattgacaatcctgttaagtttaacactgataatcctttagagactgattcatggtattcttcttcctcacatgaactccat |
44390393 |
T |
|
| Q |
302 |
cgtgatccctcatgttcctctcgccgtcgatgtcgccgctcacctttcatgccatcgatgatcccaaccacc |
373 |
Q |
| |
|
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44390392 |
cgtgacccctcatgttcctctcgccgtcgatgccgccgctcacctttcatgccatcgatgatcccaaccacc |
44390321 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 22 - 225
Target Start/End: Complemental strand, 26582580 - 26582378
Alignment:
| Q |
22 |
tgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctatcacagtacatga |
121 |
Q |
| |
|
|||| ||| |||||| ||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||||||||||| || || ||| || ||| |
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|
| T |
26582580 |
tgctctctccactctcggtcacctaatctctttctcctccacctccttcattctcctctcaatttcccaatttcattgcaaa-tccataaca--acttga |
26582484 |
T |
|
| Q |
122 |
aca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa-ggattgaatt |
219 |
Q |
| |
|
||| ||||||||||||||||||||| |||| | ||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| ||||| ||| |
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| T |
26582483 |
acaattttgatgagattaattaattaaaactgagagtctttctaaaattgaagaacgaattaattagataaaattagaatcacaacaaatggattaaatg |
26582384 |
T |
|
| Q |
220 |
gatttt |
225 |
Q |
| |
|
|||||| |
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|
| T |
26582383 |
gatttt |
26582378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 112; Significance: 2e-56; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 44095966 - 44095740
Alignment:
| Q |
10 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
109 |
Q |
| |
|
||||||||| | |||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44095966 |
gacatcatcccatgcttttttcactctatgtcacttgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
44095867 |
T |
|
| Q |
110 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
209 |
Q |
| |
|
|| | | | ||||||||||||||| |||||||||||| | ||||||||||| ||||||| ||||||||||||||||||| ||| ||||||| |
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|
| T |
44095866 |
aaccacataaaatgattttgatgagattacttaattgaaacatgaaatctttctaaaactgaagaagaaattaattaattaaaattgaaattgcaacaaa |
44095767 |
T |
|
| Q |
210 |
-ggattgaattgatttttaaattgacaa |
236 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
44095766 |
gggattgaa-tgaattttaaattgacaa |
44095740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 10 - 236
Target Start/End: Complemental strand, 2398222 - 2398007
Alignment:
| Q |
10 |
gacatcatcacgtgctttcttcactctatgtcacctgatccctttctcctccacctccttcattcccctttcaatttcccaatttcattgcaaaatctat |
109 |
Q |
| |
|
||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |
|
|
| T |
2398222 |
gacatcatcacatgctttcttcactcttggtcacctgatccctttctcctccacctccttcattcccctttcaattttccagtttcattgcaaaatccat |
2398123 |
T |
|
| Q |
110 |
cacagtacatgaacattttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
209 |
Q |
| |
|
|| || ||||||| ||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2398122 |
aaccata-------attttgacgagattaatca----taacgtaggatctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaaa |
2398034 |
T |
|
| Q |
210 |
-ggattgaattgatttttaaattgacaa |
236 |
Q |
| |
|
|||||||| ||| |||||||||||||| |
|
|
| T |
2398033 |
gggattgaa-tgaattttaaattgacaa |
2398007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 116 - 208
Target Start/End: Original strand, 38823410 - 38823503
Alignment:
| Q |
116 |
acatgaaca-ttttgatgagattaattaattgaaacagtgagtctttctaaaattgaagaacaaattaattaattaaaattagaatcacaacaa |
208 |
Q |
| |
|
||||||||| ||||||||||||||||||||| | || | ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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|
| T |
38823410 |
acatgaacaattttgatgagattaattaattaacactgagagtctttctaaaattgaagaacaaattaattagataaaattagaatcacaacaa |
38823503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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