View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_high_8 (Length: 326)
Name: NF6664_high_8
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 52086957 - 52087150
Alignment:
| Q |
1 |
tagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataatattgttatgtttgggcatagtgtatatatgtattttactgggaaattg |
100 |
Q |
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| T |
52086957 |
tagttgattatccgtttatttgtatttatcaaagtaaccttttcttaataatattgttatgtttgggcatagtgtatatatgtattttactgggaaattg |
52087056 |
T |
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| Q |
101 |
gaatagccggtgattttaaagaatttgttttggttgaagttttcttataaaaatgaaaaatggttacacacttatagctagatatgtaaaacta |
194 |
Q |
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| T |
52087057 |
gaatagccggtgattttaaagaatttgttttggttgaagtttccttataaaaatgaaaaatggttacacacttatagctagatatgtaaaacta |
52087150 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 195 - 253
Target Start/End: Complemental strand, 52980796 - 52980738
Alignment:
| Q |
195 |
gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatcaaa |
253 |
Q |
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| T |
52980796 |
gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaatcaaa |
52980738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 192 - 251
Target Start/End: Original strand, 52980171 - 52980229
Alignment:
| Q |
192 |
ctagagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatca |
251 |
Q |
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| T |
52980171 |
ctagagaaattcttagatgcaaacgaacataacacgttata-tttagaaacaactaatca |
52980229 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 17502151 - 17502205
Alignment:
| Q |
195 |
gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat |
249 |
Q |
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| T |
17502151 |
gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat |
17502205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 17508350 - 17508296
Alignment:
| Q |
195 |
gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat |
249 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
17508350 |
gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat |
17508296 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Original strand, 17544864 - 17544918
Alignment:
| Q |
195 |
gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat |
249 |
Q |
| |
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|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
17544864 |
gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat |
17544918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 195 - 249
Target Start/End: Complemental strand, 17551063 - 17551009
Alignment:
| Q |
195 |
gagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaat |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||||||||||||||||||||||||| |
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|
| T |
17551063 |
gagaaattcttaggtgcaaacgaacataacacgtcatagtttagaaacaaccaat |
17551009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 14519641 - 14519583
Alignment:
| Q |
194 |
agagaaattcttaggtgcaaacgaatataatacgtcatagtttagaaacaaccaatcaa |
252 |
Q |
| |
|
|||||||||||||| |||||||||| |||| ||||||||||||| |||||||||||||| |
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| T |
14519641 |
agagaaattcttagatgcaaacgaacataacacgtcatagtttaaaaacaaccaatcaa |
14519583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 220 - 253
Target Start/End: Complemental strand, 35411477 - 35411444
Alignment:
| Q |
220 |
ataatacgtcatagtttagaaacaaccaatcaaa |
253 |
Q |
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||||||| |||||||||||||||||||||||||| |
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| T |
35411477 |
ataatacctcatagtttagaaacaaccaatcaaa |
35411444 |
T |
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