View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_low_1 (Length: 831)
Name: NF6664_low_1
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 746; Significance: 0; HSPs: 6)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 746; E-Value: 0
Query Start/End: Original strand, 11 - 810
Target Start/End: Original strand, 39782326 - 39783127
Alignment:
| Q |
11 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
110 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782326 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
39782425 |
T |
|
| Q |
111 |
cagcccacagggatgtactacaagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaagg |
210 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782426 |
cagcccacagggatgtactacaagtgcacatgggtgggtattccggtcaacgattcaaattgtagtactggtagtagtaacaactccctgtattaaaagg |
39782525 |
T |
|
| Q |
211 |
atgtattctattaaaaatcgtgtgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctat |
310 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782526 |
atgtattctattaaaaatcgtgcgtttctcttgcactcttaccatttcacaaaacctttatcatggtaggtactaatagtgtctactcacttctttctat |
39782625 |
T |
|
| Q |
311 |
caacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaaccta |
410 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782626 |
caacgtaactataataacaagtaacaagtcatcctaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaaccta |
39782725 |
T |
|
| Q |
411 |
ttttatttttgacgagatataatgaatgaaacaacttcgctaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcattaatcattcg |
510 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782726 |
ttttatttttgacgagatataatgaatgaaacaacttcactaatcgcacctaaaatttcatccaattttttgttaagcattcctcttcattaatcattcg |
39782825 |
T |
|
| Q |
511 |
actgtgaaactctttcctatgatgcaaataacattgaagttgggatgtcattgagtgaaacgattgacaatctatatttgtaacttcacaat--gatnnn |
608 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| || |
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|
| T |
39782826 |
actgtgaaactctttcctatgatgcaaataacattgaagttgggatgtcattgagtgaaactattgacaatctatatttgtaacttcacaatgagaaaaa |
39782925 |
T |
|
| Q |
609 |
nnnngttataccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaa |
708 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39782926 |
aaaagttataccaattcatgcaaggttcattgaacgttttggaactcaagtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaa |
39783025 |
T |
|
| Q |
709 |
gaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtgg |
808 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39783026 |
gaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgcaaatagtcatcatgtgg |
39783125 |
T |
|
| Q |
809 |
ct |
810 |
Q |
| |
|
|| |
|
|
| T |
39783126 |
ct |
39783127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 181 - 801
Target Start/End: Original strand, 39788945 - 39789570
Alignment:
| Q |
181 |
gtagtagtaacaactccctgtattaaaaggatgtattctattaaaaatcgtgtgtttctcttgcactcttaccatttcacaaaacctttatcatggtagg |
280 |
Q |
| |
|
|||||||||| ||||| | | ||||||| || |||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||| |||| |
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|
| T |
39788945 |
gtagtagtaaaaactcgccggattaaaatgaagtattctattaaaaatcgagtgtttctcttgcatacttaccatttcaaaaaacctttatcatgatagg |
39789044 |
T |
|
| Q |
281 |
tactaatagtgtc----------tactcacttctttctatcaacgtaactataataacaagtaacaagtcatactaacaataaatcaagtttttatacat |
370 |
Q |
| |
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||||||||| || || |||||||||||||||||| ||| ||| || | ||||| |||| ||||||||||| ||||||| || |||| |
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|
| T |
39789045 |
tactaatagattcctaaataatctagtcacttctttctatcaac-taagagtaacaagtaacaacaattcatcctaacaataaaccaagtttgtaaacat |
39789143 |
T |
|
| Q |
371 |
atgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgagatataatgaatgaaac-aacttcgctaatcgcacctaaaatttc |
469 |
Q |
| |
|
||||| |||||||||| || |||||||||||| |||||||| |||||| ||| ||||||||||||| |||| ||||||| | | ||||| ||||||| |
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|
| T |
39789144 |
atgcatgttgatatccttt--ttttgtcaatttaaacctattctattttagaccagatataatgaattaaaccaacttcgttca---cacctcaaatttc |
39789238 |
T |
|
| Q |
470 |
atccaattttttgttaagcattcctcttcattaatcattcgactgtgaaactctttcctatgatgcaaataacattgaagtt--gggatgtcattgagtg |
567 |
Q |
| |
|
||| | |||| || | || || |||||| || ||| ||||||||| ||||| ||||||||||||||| || || || ||| ||||| ||| || |
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|
| T |
39789239 |
atcggaaatttttttgtg--ttgctgttcattgattatttgactgtgaagctcttccctatgatgcaaatagcactgtgattaagggttgtcaatgactg |
39789336 |
T |
|
| Q |
568 |
aaacgattgacaatctatatttgtaacttcacaatgatnnnnnnngttataccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtcg |
667 |
Q |
| |
|
|||| ||||||| ||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
39789337 |
aaactattgacagtctatatttgtaacttcacaatgataaaataatttatgccgattcatgcaaggttcattgaacgttttggaactcatgtcatagtcg |
39789436 |
T |
|
| Q |
668 |
gggttagcatgggaggaaaggatgtgctatatgttagacaagaagatacatcagatccccatgatccagctagtattcaaaaacttttgacagaaacagc |
767 |
Q |
| |
|
|||| |||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |
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| T |
39789437 |
gggtgagcatgggaggaaaggatgtgctatacattagacaagaagatacatcagatctccatgatccagccagtatccaaaaacttttgacagaaacagc |
39789536 |
T |
|
| Q |
768 |
tagcctgaagttcatggattctgcaaatagtcat |
801 |
Q |
| |
|
|||| ||||||||||||||||||| ||| |||| |
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|
| T |
39789537 |
tagcacgaagttcatggattctgcagataatcat |
39789570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 144; E-Value: 3e-75
Query Start/End: Original strand, 553 - 801
Target Start/End: Original strand, 39794046 - 39794294
Alignment:
| Q |
553 |
ggatgtcattgagtgaaacgattgacaatctatatttgtaacttcacaatgatnnnnnnngttataccaattcatgcaaggttcattgaacgttttggaa |
652 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||||||||||||| |||| | |||| ||| ||||||||||||||||| |||| |
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|
| T |
39794046 |
ggatgtcattaggtgaaactattgacaatctatatttgtaacttcacaatgataaagtaatttatgctgattcgtgctaggttcattgaacgtttcggaa |
39794145 |
T |
|
| Q |
653 |
ctcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaagaagatacatcagatccccatgatccagctagtattcaaaaact |
752 |
Q |
| |
|
|||||||||| || ||||| |||||||||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||||||||||||||||||||| |
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|
| T |
39794146 |
ctcatgtcatagttggggtgagcatgggaggaaaggatgtgctatacgttagacaagatgatacatcaaatcaccatgatccagctagtattcaaaaact |
39794245 |
T |
|
| Q |
753 |
tttgacagaaacagctagcctgaagttcatggattctgcaaatagtcat |
801 |
Q |
| |
|
||||||||||||||||| | ||||||| |||||||||||||||| |||| |
|
|
| T |
39794246 |
tttgacagaaacagctaacatgaagtttatggattctgcaaataatcat |
39794294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 103; E-Value: 8e-51
Query Start/End: Original strand, 617 - 791
Target Start/End: Original strand, 39776265 - 39776439
Alignment:
| Q |
617 |
taccaattcatgcaaggttcattgaacgttttggaactcatgtcattgtcggggttagcatgggaggaaaggatgtgctatatgttagacaagaagatac |
716 |
Q |
| |
|
|||| |||||| |||||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||||||| | |||||||||||||||||||| |
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|
| T |
39776265 |
taccgattcatacaaggttcatagaacgttttggaactcatgtgatagtcggggtgagcatgggagggaaggatgtgttttatgttagacaagaagatac |
39776364 |
T |
|
| Q |
717 |
atcagatccccatgatccagctagtattcaaaaacttttgacagaaacagctagcctgaagttcatggattctgc |
791 |
Q |
| |
|
||||||| | ||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
39776365 |
atcagatatcagtgatccaactagtatccaaaaacttttgaaggaaacagctagcatgaagttcatggattctgc |
39776439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 39788783 - 39788883
Alignment:
| Q |
11 |
catcatcatgggaccctgaggcagtggcaaggttagaccctggtattgaatatatgtttggcacatgcaatagatatgttctattattttttattagcca |
110 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39788783 |
catcatcatgggaccctgaagctttggcaaggttagaccctggaactg--catttgtttggcacatgcaatagatatgttctattattttttattagcca |
39788880 |
T |
|
| Q |
111 |
cag |
113 |
Q |
| |
|
||| |
|
|
| T |
39788881 |
cag |
39788883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 328 - 455
Target Start/End: Original strand, 39793850 - 39793976
Alignment:
| Q |
328 |
caagtaacaagtcatactaacaataaatcaagtttttatacatatgcaagttgatatccgttctttttgtcaatttgaacctattttatttttgacgaga |
427 |
Q |
| |
|
|||||||||| |||| |||||| |||| ||||||| ||||||||||||||||| ||| | | ||| ||||||||| |||||||| |||| || || || |
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|
| T |
39793850 |
caagtaacaactcatcctaacagtaaaccaagtttatatacatatgcaagttgttattc--tttttctgtcaatttcaacctattatattctttaccagt |
39793947 |
T |
|
| Q |
428 |
tataatgaatg-aaacaacttcgctaatc |
455 |
Q |
| |
|
||||||||||| ||||||||||| ||||| |
|
|
| T |
39793948 |
tataatgaatgaaaacaacttcgttaatc |
39793976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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