View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_low_16 (Length: 246)
Name: NF6664_low_16
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 12 - 228
Target Start/End: Original strand, 29504333 - 29504549
Alignment:
| Q |
12 |
catcatcaaggagacgctctttaaaaccaccaaactgaagcaaccatcgcataaacggagatttctcaagctccaaaaatctggcaacaacagacgccgg |
111 |
Q |
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| T |
29504333 |
catcagcaagtagacgctctttaaaaccaccaaactgaagcaaccatcgcataaacggagatttctcaagctccaaaaacctggcaactacagacgccgg |
29504432 |
T |
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| Q |
112 |
aatcttaccttccttgatagcagaagctaagtcagccggcacactctccaacgacctccccgcttgcgccaacaacaacagcgcctcattcaatcctcca |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29504433 |
aatcttaccttccttgatagcagaagctaagtcagccggcacactctccaacgacctccccgcttgcgccaacaacaacagcgcctcattcaatcctcca |
29504532 |
T |
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| Q |
212 |
ctctttccgtcgttgct |
228 |
Q |
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||||||||||| ||||| |
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| T |
29504533 |
ctctttccgtcattgct |
29504549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 54 - 228
Target Start/End: Original strand, 16970265 - 16970438
Alignment:
| Q |
54 |
accatcgcataaacggagatttctcaagctccaaaaatctggcaacaacagacgccggaatcttaccttccttgatagcagaagctaagtcagccggcac |
153 |
Q |
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||||||||||||| | | | ||||||||||||||||| || ||||| | |||||||||||| || |||||||||||||| ||||||||||||||| ||| |
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| T |
16970265 |
accatcgcataaatgaaaacttctcaagctccaaaaacctcgcaactatagacgccggaat-ttcccttccttgatagccaaagctaagtcagccgacac |
16970363 |
T |
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| Q |
154 |
actctccaacgacctccccgcttgcgccaacaacaacagcgcctcattcaatcctccactctttccgtcgttgct |
228 |
Q |
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|||||| ||||||||||||||||| ||||||||||||| | ||||||||||||| || ||||||||||| ||||| |
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| T |
16970364 |
actctctaacgacctccccgcttgtgccaacaacaacaacacctcattcaatccaccgctctttccgtcattgct |
16970438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 12 - 58
Target Start/End: Original strand, 16968644 - 16968690
Alignment:
| Q |
12 |
catcatcaaggagacgctctttaaaaccaccaaactgaagcaaccat |
58 |
Q |
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||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
16968644 |
catcagcaagaagacgctctttaaaaccaccaaactgaagcaaccat |
16968690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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