View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_low_17 (Length: 237)
Name: NF6664_low_17
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 27168520 - 27168297
Alignment:
| Q |
1 |
taagagatatgctagaagtaaaagatatactattgtctatggtaccaagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtc |
100 |
Q |
| |
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|||||||||| | | ||||| |||||||| |||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
27168520 |
taagagatataccacaagtagaagatatattattgtctgcagtaccaagtgttcaagagacttagctctaaaagttgtcaattttataatttattttgtc |
27168421 |
T |
|
| Q |
101 |
ttctattttgagttgttggattggtaatt-gtttgttatgtaagacataacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatact |
199 |
Q |
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||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| | ||||| ||||||||||||| |||||||||||| | |
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| T |
27168420 |
ttctattttgagttgtttgattggtaattattttgttatgtaagacataacttgttgtttcctactccaacattgcactttgtgagttgtgataaatatt |
27168321 |
T |
|
| Q |
200 |
atcttcttttgaatggatgtattt |
223 |
Q |
| |
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||||||||||| |||||||||||| |
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| T |
27168320 |
atcttcttttgcatggatgtattt |
27168297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 139; Significance: 7e-73; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 46474700 - 46474922
Alignment:
| Q |
2 |
aagagatatgctagaagtaaaagatatactattgtctatggtaccaagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtct |
101 |
Q |
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||||||||| |||||||||||||||||| |||||| | |||||||| ||||||||||||||| | ||||| || |||||||||||||||||||||||| |
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| T |
46474700 |
aagagatatactagaagtaaaagatatattattgtatgcagtaccaagcgttcaagagacttagcttcaaaaattttcaattttataatttattttgtct |
46474799 |
T |
|
| Q |
102 |
tctattttgagttgttggattggtaatt-gtttgttatgtaagacataacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatacta |
200 |
Q |
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|||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||| || |||||||||||| |
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| T |
46474800 |
tctattttgagttgttggatcggtaattattttgttatgtaagacataacttgttgtttctaattccaacattgcactttgtgagttatgataaatacta |
46474899 |
T |
|
| Q |
201 |
tcttcttttgaatggatgtattt |
223 |
Q |
| |
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|||||||||| |||||||||||| |
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| T |
46474900 |
tcttcttttgcatggatgtattt |
46474922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 45919036 - 45919236
Alignment:
| Q |
22 |
aagatatactattgtctatggtaccaagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtcttctattttgagttgttggat |
121 |
Q |
| |
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|||||||| ||||||||| |||| ||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
45919036 |
aagatataatattgtctacggtatcaagtgttcaagagacttaacttcaaaatttgtcaattttataatttattttgtcttct--tttgagttattggat |
45919133 |
T |
|
| Q |
122 |
tggtaattgttt-gttatgtaagacataacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatactatcttcttttgaatggatgta |
220 |
Q |
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|| ||||| ||| ||||||| ||||||||||||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||||||| |||| |||| |
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| T |
45919134 |
tgataattattttgttatgttagacataacttgttgtttcaaattccaacattgcattttgtgagttgtgataaatactatcttcttttgcatggttgta |
45919233 |
T |
|
| Q |
221 |
ttt |
223 |
Q |
| |
|
||| |
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|
| T |
45919234 |
ttt |
45919236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 47 - 201
Target Start/End: Complemental strand, 30052099 - 30051944
Alignment:
| Q |
47 |
aagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtcttctattttgagttgttggattggtaatt-gtttgttatgtaagac |
145 |
Q |
| |
|
|||| ||||||||||| || ||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| ||||||||||||||| |
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| T |
30052099 |
aagttttcaagagactaagctccaaaaattgttaattttataatttattttgtcttatattttgaattgttggattgataattattttgttatgtaagac |
30052000 |
T |
|
| Q |
146 |
ataacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatactat |
201 |
Q |
| |
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||| ||||||||| | ||||||| ||||||||||||| |||||||||||||||| |
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| T |
30051999 |
ttaagttgttgttttcgattccaacattgcactttgtgagttgtgataaatactat |
30051944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 24802237 - 24802460
Alignment:
| Q |
1 |
taagagatatgctagaagtaaaagatatactattgtctatggtaccaagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtc |
100 |
Q |
| |
|
|||||||||| | ||||||| || |||||||||||||| | | ||||||||||||||||||| | |||| ||||||||||||||||||||||||||||| |
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| T |
24802237 |
taagagatataccagaagtataaaatatactattgtctgtag-accaagtgttcaagagactaaattccacaagttgtcaattttataatttattttgtc |
24802335 |
T |
|
| Q |
101 |
ttctattttgagttgttggattggtaatt-gtttgttatgtaagacataacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatact |
199 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||| | ||||||| |||| |||| |||| |
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| T |
24802336 |
ttctattatgagttattggattggtaattattttgttatgtaagacataacttgttatttccaattccattattgtattttgtgagttgtaataagtact |
24802435 |
T |
|
| Q |
200 |
atcttcttttgaatggatgtatttg |
224 |
Q |
| |
|
||||||||||| ||||||||||||| |
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|
| T |
24802436 |
atcttcttttgcatggatgtatttg |
24802460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 53 - 223
Target Start/End: Original strand, 7120060 - 7120228
Alignment:
| Q |
53 |
tcaagagacttagatccaaaagttgtcaattttataatttattttgtcttctattttgagttgttggattggtaattgttt-gttatgtaagacataact |
151 |
Q |
| |
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||||||||||||| || ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
7120060 |
tcaagagacttagctctaaaagttgtcaattttatactttatt--gtcttctattttgagttgttggattggtaattattttgttatgtaagacataact |
7120157 |
T |
|
| Q |
152 |
tgttgtttccaattccaaatttgcactttgtgaattgtgataaatactatcttcttttgaatggatgtattt |
223 |
Q |
| |
|
|||||||| |||||||||| || |||||||| |||||||||||||||| |||||||| |||||||||||| |
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|
| T |
7120158 |
tgttgttttcaattccaaaatt-ttctttgtgagttgtgataaatactatattcttttgcatggatgtattt |
7120228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 47 - 207
Target Start/End: Original strand, 32606109 - 32606251
Alignment:
| Q |
47 |
aagtgttcaagagacttagatccaaaagttgtcaattttataatttattttgtcttctattttgagttgttggattggtaattgtttgttatgtaagaca |
146 |
Q |
| |
|
||||| ||| |||||||| ||||| |||||| || ||||||||||||||||||||||||||| ||||||||||||||||||| || |
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| T |
32606109 |
aagtgctcatgagacttacctccaatagttgttaactttataatttattttgtcttctatttttagttgttggattggtaattatt-------------- |
32606194 |
T |
|
| Q |
147 |
taacttgttgtttccaattccaaatttgcactttgtgaattgtgataaatactatcttctt |
207 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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|
| T |
32606195 |
----ttgttgtttccaattccaatgttgcactttgtgaattgtgataaatactatcttctt |
32606251 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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