View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6664_low_18 (Length: 235)
Name: NF6664_low_18
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_18 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 39391946 - 39391726
Alignment:
| Q |
1 |
agactgtttgatgacagtgattcattcgatatttctgtaaagaaatcaaaagcgccaccagatgatgatcactgcaaagatgaagatggtattccttcgg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39391946 |
agactgtttgatgacagtgattcattcgatatttctgttaagaaatcaaaagcgccaccagatgatgatcactgcaaagatgaagatggtattccttcgg |
39391847 |
T |
|
| Q |
101 |
ctagtatgtctaaaaggcagggaaaatctactaatgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39391846 |
ctagtatgtctaaaaggcagggaaaatctactaatgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaag |
39391747 |
T |
|
| Q |
201 |
gaagagtcgagtagaaaaaga |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
39391746 |
gaagagtcgagtagaaaaaga |
39391726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 220
Target Start/End: Original strand, 39160913 - 39161101
Alignment:
| Q |
32 |
tttctgtaaagaaatcaaaagcgccaccagatgatgatcactgcaaagatgaagatggtattccttcggctagtatgtctaaaaggcagggaaaatctac |
131 |
Q |
| |
|
||||||| ||||||||||| ||| | || |||||||||| | ||||||| |||||||||||| || | |||| |||||| || | ||||| | |
|
|
| T |
39160913 |
tttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagc |
39161012 |
T |
|
| Q |
132 |
taatgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaaggaagagtcgagtagaaaaag |
220 |
Q |
| |
|
| ||||||| |||||||| |||||||| |||||| ||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||| |
|
|
| T |
39161013 |
tgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcataaggaagaggcaagtggaaaaag |
39161101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 32 - 220
Target Start/End: Complemental strand, 39208281 - 39208093
Alignment:
| Q |
32 |
tttctgtaaagaaatcaaaagcgccaccagatgatgatcactgcaaagatgaagatggtattccttcggctagtatgtctaaaaggcagggaaaatctac |
131 |
Q |
| |
|
||||||| ||||||||||| ||| | || |||||||||| | ||||||| |||||||||||| || | |||| |||||| || | ||||| | |
|
|
| T |
39208281 |
tttctgttaagaaatcaaaggcgtcgccgtatgatgatcagggaaaagatggagatggtattccgccgacaagtacaactaaaaagccaagcaaatcagc |
39208182 |
T |
|
| Q |
132 |
taatgaatcgttttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaaggaagagtcgagtagaaaaag |
220 |
Q |
| |
|
| ||||||| |||||||| |||||||| |||||| ||||| |||||| |||||||||||||||| ||||||||| | ||| ||||||| |
|
|
| T |
39208181 |
tgatgaatcattttcctcgctgatgaaagaacttcaattggtacaaaaatcgtttaagaaatgcataaggaagaggcaagtggaaaaag |
39208093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 221
Target Start/End: Original strand, 33559457 - 33559635
Alignment:
| Q |
43 |
aaatcaaaagcgccaccagatgatgatcactgcaaagatgaagatggtattccttcggctagtatgtctaaaaggcagggaaaatctactaatgaatcgt |
142 |
Q |
| |
|
|||||||| || ||||| ||||||||||| | ||| ||| |||||||||| ||| | |||| |||||| || | ||||||| || ||||||| | |
|
|
| T |
33559457 |
aaatcaaaggcatcaccatatgatgatcacagtaaacatggagatggtattttgtcgtcgagtacagctaaaaagccgagaaaatcagctgatgaatcat |
33559556 |
T |
|
| Q |
143 |
tttcctcactgatgaatgaacttgcattggcacaaaagtcgtttaagaaatgcaaaaggaagagtcgagtagaaaaaga |
221 |
Q |
| |
|
||||||| |||||||| |||||| ||||| |||||| |||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
33559557 |
tttcctcgctgatgaaagaacttcgattggtacaaaactcgtttaagaaatgcaaaaggaagaggcgagtagaaaaaga |
33559635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University