View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_low_2 (Length: 610)
Name: NF6664_low_2
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 160 - 600
Target Start/End: Complemental strand, 26832197 - 26831756
Alignment:
| Q |
160 |
gagtattatgaatgcttagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatctaggggttgaggttcgaacctcggactt |
259 |
Q |
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| T |
26832197 |
gagtattatggatgctaagacttcatttatggctgcattgagttggtttctgcggcaaacgtccgcaatatccaggggttgaggttcaaacctcggactt |
26832098 |
T |
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| Q |
260 |
ctcacttattcacctttcgatgaatttccaactactaggatgatatagtgcatatagactaacttaannnnnnnncatcatcaccttaattaggaaacac |
359 |
Q |
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| T |
26832097 |
ctcacttattcacttttagatgaatttccaactactaggatgatatagtgcatatagactaacttaattttttttcatcatcacattaattaggaaacac |
26831998 |
T |
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| Q |
360 |
-ttgaagaagagactaatctcctactaatacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta |
458 |
Q |
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| T |
26831997 |
attgaagaagagactaatctcctactattacattatcagctgcatgtgcaattttaatttaatagtggaccctattttccagtaactgtttatgtatcta |
26831898 |
T |
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| Q |
459 |
ttagtaatgaacggattaattaatatttgtactatcctgcaaaataatttctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag |
558 |
Q |
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| T |
26831897 |
ttagtaatgaactgattaattaatatttgtactatcctgcaaaataattcctaatcagtataagataaactatatagcaattaatttgcatcgaagcaag |
26831798 |
T |
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| Q |
559 |
gttgttgaattaattaattaacgatgtgtgattttccctttg |
600 |
Q |
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| T |
26831797 |
gttgttgaattaattaattaacgatgtgtgattttccctttg |
26831756 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 118; E-Value: 7e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 26832323 - 26832206
Alignment:
| Q |
1 |
ttcctttggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtca |
100 |
Q |
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| T |
26832323 |
ttcctttggttggtttcttttgtgtgcataaaaagtaacatggaaaaggtggaaaatgctacttaaaagagtgcatatttgatttggatacagtctgtca |
26832224 |
T |
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| Q |
101 |
tgagaagtcatcgtcatg |
118 |
Q |
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| T |
26832223 |
tgagaagtcatcgtcatg |
26832206 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 10629409 - 10629461
Alignment:
| Q |
234 |
ggggttgaggttcgaacctcggacttctcacttattcacctttcgatgaattt |
286 |
Q |
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| T |
10629409 |
ggggttggggttcgaacctcggacatcccatttattcacctttagatgaattt |
10629461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 237 - 274
Target Start/End: Original strand, 3218632 - 3218669
Alignment:
| Q |
237 |
gttgaggttcgaacctcggacttctcacttattcacct |
274 |
Q |
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| T |
3218632 |
gttgaggttcgaacctcgaacttctcacttattcacct |
3218669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 24074542 - 24074590
Alignment:
| Q |
227 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
275 |
Q |
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|||| |||||||||| ||||||||||||||| |||||||||||||||| |
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| T |
24074542 |
atatgtaggggttgaagttcgaacctcggacacctcacttattcacctt |
24074590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 14487597 - 14487645
Alignment:
| Q |
227 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
275 |
Q |
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|||| ||||||||| ||||||||||||||| || |||||||||||||| |
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| T |
14487597 |
atatgtaggggttggggttcgaacctcggatatcccacttattcacctt |
14487645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 42488745 - 42488793
Alignment:
| Q |
227 |
atatctaggggttgaggttcgaacctcggacttctcacttattcacctt |
275 |
Q |
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| T |
42488745 |
atatgtaggggttggggttcaaacctcggacgcctcacttattcacctt |
42488793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 232 - 276
Target Start/End: Complemental strand, 31435555 - 31435511
Alignment:
| Q |
232 |
taggggttgaggttcgaacctcggacttctcacttattcaccttt |
276 |
Q |
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||||||||| |||||||||||||||| || |||||||||| |||| |
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| T |
31435555 |
taggggttggggttcgaacctcggacatcccacttattcatcttt |
31435511 |
T |
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