View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6664_low_6 (Length: 355)

Name: NF6664_low_6
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6664_low_6
NF6664_low_6
[»] chr4 (37 HSPs)
chr4 (1-346)||(22479747-22480111)
chr4 (37-160)||(6487325-6487448)
chr4 (37-160)||(8563365-8563488)
chr4 (37-160)||(9972746-9972869)
chr4 (37-160)||(51967250-51967373)
chr4 (37-178)||(26448604-26448745)
chr4 (37-160)||(40162762-40162885)
chr4 (64-178)||(56423964-56424078)
chr4 (64-160)||(29469163-29469259)
chr4 (64-160)||(8084209-8084305)
chr4 (37-149)||(21486488-21486600)
chr4 (64-171)||(29510062-29510169)
chr4 (64-183)||(54561219-54561338)
chr4 (66-171)||(23170727-23170832)
chr4 (37-160)||(14334367-14334490)
chr4 (64-171)||(27768513-27768620)
chr4 (37-193)||(29966368-29966512)
chr4 (64-171)||(49501178-49501285)
chr4 (64-171)||(49507243-49507350)
chr4 (68-158)||(23671383-23671473)
chr4 (66-171)||(41725564-41725669)
chr4 (37-149)||(871783-871894)
chr4 (37-121)||(3860230-3860314)
chr4 (37-121)||(3868987-3869071)
chr4 (64-160)||(24966526-24966622)
chr4 (69-141)||(41470352-41470424)
chr4 (64-171)||(5441851-5441958)
chr4 (37-140)||(25013419-25013522)
chr4 (64-171)||(50517193-50517300)
chr4 (64-171)||(51321305-51321412)
chr4 (64-141)||(33138800-33138877)
chr4 (65-121)||(40487705-40487761)
chr4 (64-171)||(29855965-29856072)
chr4 (64-171)||(37828075-37828182)
chr4 (64-171)||(48261527-48261634)
chr4 (64-171)||(49834479-49834586)
chr4 (65-171)||(26491119-26491225)
[»] chr6 (18 HSPs)
chr6 (37-193)||(8779552-8779708)
chr6 (37-183)||(21199527-21199673)
chr6 (37-183)||(31996229-31996375)
chr6 (64-160)||(1463675-1463771)
chr6 (64-160)||(6788100-6788196)
chr6 (37-141)||(7835387-7835491)
chr6 (64-156)||(10113788-10113880)
chr6 (37-149)||(12028948-12029060)
chr6 (65-149)||(13461374-13461458)
chr6 (66-170)||(34758726-34758830)
chr6 (68-195)||(3000244-3000372)
chr6 (64-171)||(16438706-16438813)
chr6 (64-171)||(31067880-31067987)
chr6 (64-171)||(31896085-31896192)
chr6 (66-160)||(7497548-7497642)
chr6 (66-160)||(14262093-14262187)
chr6 (65-171)||(31975645-31975751)
chr6 (65-158)||(21010883-21010976)
[»] chr1 (44 HSPs)
chr1 (37-191)||(1108346-1108500)
chr1 (39-152)||(21248487-21248600)
chr1 (37-141)||(18954459-18954563)
chr1 (45-183)||(34751553-34751691)
chr1 (37-160)||(7798494-7798617)
chr1 (41-160)||(34019117-34019236)
chr1 (74-167)||(43854676-43854769)
chr1 (64-160)||(4005088-4005184)
chr1 (71-183)||(33886841-33886953)
chr1 (71-183)||(33957297-33957409)
chr1 (66-160)||(1243310-1243404)
chr1 (64-160)||(9192045-9192141)
chr1 (64-160)||(11579104-11579200)
chr1 (37-101)||(37980018-37980081)
chr1 (64-160)||(41353442-41353538)
chr1 (64-160)||(51106913-51107009)
chr1 (64-171)||(46328434-46328541)
chr1 (64-160)||(8147338-8147434)
chr1 (64-160)||(26757636-26757732)
chr1 (64-171)||(45273015-45273122)
chr1 (64-171)||(47371568-47371675)
chr1 (37-138)||(21446808-21446909)
chr1 (68-160)||(5209372-5209464)
chr1 (37-160)||(40433807-40433930)
chr1 (64-147)||(3593267-3593350)
chr1 (64-171)||(6313024-6313131)
chr1 (64-171)||(15834677-15834784)
chr1 (257-335)||(21447011-21447090)
chr1 (64-171)||(25612540-25612647)
chr1 (64-171)||(29396077-29396184)
chr1 (65-171)||(48966484-48966590)
chr1 (64-149)||(49971610-49971696)
chr1 (64-160)||(5494752-5494848)
chr1 (65-160)||(48177096-48177192)
chr1 (64-171)||(3583549-3583656)
chr1 (64-171)||(8140876-8140983)
chr1 (64-171)||(18798900-18799007)
chr1 (65-171)||(28403939-28404045)
chr1 (37-83)||(29027979-29028025)
chr1 (64-146)||(52182347-52182429)
chr1 (64-141)||(9322181-9322258)
chr1 (68-149)||(27257873-27257954)
chr1 (86-171)||(49453053-49453138)
chr1 (68-160)||(35177214-35177306)
[»] chr5 (27 HSPs)
chr5 (37-160)||(33892847-33892970)
chr5 (37-178)||(40767374-40767518)
chr5 (44-160)||(3032287-3032402)
chr5 (37-160)||(2675079-2675202)
chr5 (37-160)||(21238764-21238887)
chr5 (64-160)||(7125170-7125266)
chr5 (37-141)||(25868772-25868876)
chr5 (37-155)||(34909565-34909683)
chr5 (68-198)||(5651153-5651284)
chr5 (37-195)||(16497705-16497864)
chr5 (37-171)||(31913471-31913605)
chr5 (41-149)||(29758683-29758790)
chr5 (64-171)||(39852819-39852926)
chr5 (66-170)||(5949562-5949666)
chr5 (64-160)||(28623172-28623268)
chr5 (64-171)||(4240112-4240219)
chr5 (64-171)||(37014303-37014410)
chr5 (64-171)||(40013351-40013458)
chr5 (64-171)||(1460792-1460899)
chr5 (64-171)||(13926380-13926487)
chr5 (65-104)||(15286595-15286634)
chr5 (41-160)||(16800706-16800824)
chr5 (64-171)||(37798114-37798221)
chr5 (64-158)||(4549917-4550011)
chr5 (64-141)||(16548869-16548946)
chr5 (37-110)||(24258538-24258611)
chr5 (65-102)||(29716854-29716891)
[»] chr2 (35 HSPs)
chr2 (37-160)||(38413459-38413582)
chr2 (37-141)||(12877659-12877763)
chr2 (37-183)||(13898449-13898595)
chr2 (37-183)||(14039066-14039212)
chr2 (41-160)||(11153355-11153474)
chr2 (64-178)||(3991773-3991887)
chr2 (37-183)||(19948511-19948657)
chr2 (46-178)||(33262835-33262967)
chr2 (37-160)||(2103447-2103567)
chr2 (64-160)||(18899933-18900029)
chr2 (68-160)||(41978841-41978933)
chr2 (252-336)||(37655019-37655104)
chr2 (68-129)||(5842850-5842911)
chr2 (64-160)||(10657879-10657975)
chr2 (64-160)||(35404324-35404420)
chr2 (68-171)||(379383-379486)
chr2 (64-171)||(18177720-18177827)
chr2 (64-171)||(28739940-28740047)
chr2 (64-171)||(28845034-28845141)
chr2 (86-160)||(34353062-34353137)
chr2 (65-171)||(3575291-3575397)
chr2 (68-169)||(2308710-2308811)
chr2 (68-160)||(15224234-15224326)
chr2 (64-160)||(40829636-40829732)
chr2 (37-101)||(43318813-43318877)
chr2 (92-160)||(45161138-45161206)
chr2 (68-147)||(3858440-3858519)
chr2 (64-171)||(7027352-7027459)
chr2 (68-171)||(31847212-31847315)
chr2 (116-183)||(43318743-43318810)
chr2 (67-121)||(30850271-30850325)
chr2 (76-158)||(37655197-37655278)
chr2 (64-149)||(15926378-15926463)
chr2 (68-141)||(24025852-24025925)
chr2 (64-160)||(26789234-26789330)
[»] chr7 (28 HSPs)
chr7 (37-171)||(31174682-31174816)
chr7 (37-160)||(21024039-21024162)
chr7 (37-193)||(35313530-35313688)
chr7 (37-183)||(14732276-14732422)
chr7 (37-183)||(34656578-34656724)
chr7 (37-178)||(19594184-19594324)
chr7 (76-160)||(6268513-6268597)
chr7 (64-160)||(14741426-14741522)
chr7 (64-160)||(4639878-4639974)
chr7 (37-140)||(37392648-37392751)
chr7 (65-149)||(11735205-11735289)
chr7 (37-109)||(27148818-27148890)
chr7 (64-160)||(28034510-28034606)
chr7 (64-171)||(510093-510200)
chr7 (64-171)||(18838857-18838964)
chr7 (64-171)||(28342758-28342865)
chr7 (64-171)||(39784554-39784661)
chr7 (64-171)||(44256406-44256513)
chr7 (64-149)||(33497108-33497193)
chr7 (64-160)||(40460376-40460472)
chr7 (64-171)||(29585961-29586068)
chr7 (64-171)||(29614446-29614553)
chr7 (64-171)||(37328354-37328461)
chr7 (37-160)||(38910454-38910577)
chr7 (65-171)||(41827776-41827882)
chr7 (64-149)||(12740817-12740902)
chr7 (68-149)||(26201805-26201886)
chr7 (64-160)||(48136890-48136986)
[»] chr3 (32 HSPs)
chr3 (37-183)||(9818546-9818692)
chr3 (64-160)||(8598659-8598755)
chr3 (64-160)||(49296116-49296212)
chr3 (37-183)||(40064251-40064397)
chr3 (68-160)||(16155168-16155260)
chr3 (64-160)||(53835962-53836058)
chr3 (64-171)||(4962725-4962832)
chr3 (66-149)||(7665593-7665676)
chr3 (64-171)||(23753035-23753142)
chr3 (41-160)||(37832549-37832668)
chr3 (37-160)||(49293776-49293899)
chr3 (62-160)||(22489489-22489587)
chr3 (37-183)||(29690605-29690750)
chr3 (37-194)||(19386862-19387018)
chr3 (64-160)||(50761757-50761853)
chr3 (64-171)||(20833344-20833451)
chr3 (64-171)||(21386478-21386585)
chr3 (64-149)||(25049871-25049956)
chr3 (86-171)||(33693278-33693363)
chr3 (64-149)||(49458358-49458443)
chr3 (37-146)||(53645332-53645441)
chr3 (63-171)||(26107775-26107883)
chr3 (64-160)||(37455294-37455390)
chr3 (64-172)||(51737332-51737440)
chr3 (64-171)||(31645907-31646014)
chr3 (68-171)||(40897582-40897685)
chr3 (64-171)||(48379597-48379704)
chr3 (64-171)||(50902955-50903062)
chr3 (64-171)||(52810805-52810912)
chr3 (64-150)||(17946675-17946761)
chr3 (92-178)||(47467398-47467484)
chr3 (68-149)||(52617640-52617721)
[»] chr8 (22 HSPs)
chr8 (37-148)||(1527921-1528032)
chr8 (37-160)||(41252137-41252260)
chr8 (64-160)||(19484215-19484311)
chr8 (37-160)||(28317076-28317199)
chr8 (64-171)||(42305249-42305356)
chr8 (64-171)||(43308153-43308260)
chr8 (64-169)||(8029836-8029941)
chr8 (64-160)||(9288150-9288246)
chr8 (68-159)||(6388131-6388222)
chr8 (64-171)||(10294984-10295091)
chr8 (86-160)||(27878639-27878713)
chr8 (86-160)||(28018820-28018894)
chr8 (41-178)||(33177834-33177971)
chr8 (66-171)||(41393958-41394063)
chr8 (64-160)||(14781788-14781884)
chr8 (64-171)||(18305621-18305728)
chr8 (64-171)||(18958372-18958479)
chr8 (64-171)||(19717519-19717626)
chr8 (64-171)||(43166321-43166428)
chr8 (64-171)||(44725436-44725543)
chr8 (86-160)||(27915583-27915657)
chr8 (86-160)||(27962002-27962076)
[»] scaffold0246 (2 HSPs)
scaffold0246 (37-160)||(1340-1463)
scaffold0246 (65-121)||(25644-25700)
[»] scaffold0457 (1 HSPs)
scaffold0457 (62-160)||(6141-6241)
[»] scaffold1128 (1 HSPs)
scaffold1128 (64-160)||(909-1005)
[»] scaffold0421 (1 HSPs)
scaffold0421 (92-160)||(1727-1795)
[»] scaffold0433 (1 HSPs)
scaffold0433 (37-121)||(363-447)
[»] scaffold0543 (1 HSPs)
scaffold0543 (64-171)||(10973-11080)
[»] scaffold1504 (1 HSPs)
scaffold1504 (64-160)||(1315-1411)
[»] scaffold0013 (1 HSPs)
scaffold0013 (64-160)||(89280-89376)


Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 22479747 - 22480111
Alignment:
Q  1 atgcatttctttgctcctccacaagctccaaagggtaatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaa-- 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||      
T  22479747 atgcatttctttgctcctccacaagctccaaagggtaatcgagtgttaactcgtaaatttggatgagtttacgtttttaggtgttaaaatcgtgttaaaa 22479846  T
Q  99 -------ctcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaact----------gggtaaaatc 181  Q
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||    
T  22479847 acgtaaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgtggtaaacttggtaaactcgggtaaaatc 22479946  T
Q  182 gtctgagtttacgagttattactnnnnnnntgtttgtttttcagttttggatcattctttgctgagtccgttttctgttaaaatcctattccttttttca 281  Q
    ||||||||||||||||||| |||       |||||||||||||||||||| ||||||||| ||| |||| |||||||||||||||| |||||||||||||    
T  22479947 gtctgagtttacgagttatcactaaaaaaatgtttgtttttcagttttgggtcattcttttctgggtccattttctgttaaaatccaattccttttttca 22480046  T
Q  282 gttcaatagtccaaagtacttgtcttgtctttacagttaacactttcatgtcttgtcttcccttt 346  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22480047 gttcaataatccaaagtacttgtcttgtctttacagttaacactttcatgtcttgtcttcccttt 22480111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 6487448 - 6487325
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| |||  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  6487448 aatcgagtgttaacacgtaaacttgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagt 6487349  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||| ||||    
T  6487348 ttgacgagtttgaccgagtgaaca 6487325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 8563488 - 8563365
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||| ||||| | | |||||||||||||||||| ||  |||| ||||||||||||||  |||| ||| |||||| ||||||||||| ||    
T  8563488 aatcgagtgttaacttgtaaactcgcacgagtttacgtttttagatgacaaaaacgtgttaactcggagataaactcggtttttgatgaaatcggaaagt 8563389  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  8563388 ttgacgagtttgaccgagttaaca 8563365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 9972746 - 9972869
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||| |||||||||||||| |  |||||||| |||||||||||  |||| ||||| |||||||| ||||| ||| |||||| ||||||||||| ||    
T  9972746 aatcgagtattaactcgtaaattcgctcgagtttatgtttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagt 9972845  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  9972846 ttgacgagtttgaccgagttaaca 9972869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 51967250 - 51967373
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| |||||||| || ||    
T  51967250 aatcgagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagt 51967349  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  51967350 ttgacgagtttgaccgagttaaca 51967373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 26448604 - 26448745
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||| ||||||||||  |||| | ||| |||||||| ||||| |   |||||| ||||||||||| ||    
T  26448604 aatcgagtgttaactcgtaaactcgctcgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaacttaatttttggtgaaatcggaaagt 26448703  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    ||||| ||||||| |||||||||| ||| |||||| ||||||    
T  26448704 ttgacgagtttgaccgagttaacacgcgttaaactcggtaaa 26448745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 40162762 - 40162885
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| ||||| || |||||  |||| ||| |||| | ||||||||||| ||    
T  40162762 aatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaactcggttttcggtgaaatcggaaagt 40162861  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  40162862 ttgacgagtttgaccgagttaaca 40162885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 178
Target Start/End: Complemental strand, 56424078 - 56423964
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||  ||||||||||| ||||||  ||||||| | ||||||||||     
T  56424078 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttagtgaaatcggaaagtttgatgagtttgaccaagttaacatgt 56423979  T
Q  164 ggtaaactgggtaaa 178  Q
    | |||||| ||||||    
T  56423978 gttaaactcggtaaa 56423964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 29469163 - 29469259
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  29469163 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 29469259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 8084209 - 8084305
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| |  | ||||||||| ||||||| ||||||| ||||||||||    
T  8084209 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaaca 8084305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 21486488 - 21486600
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| ||||| |||||| | ||||| ||| ||||||  |||||| ||| ||    
T  21486488 aatcgagtgttaactcgtaaactcgttcgagtttacgtttttaggtggcaaaaccgtgtaaactcgaaggtaaactcggtttttggagaaatcagaaagt 21486587  T
Q  137 ttgacaagtttga 149  Q
    ||||| |||||||    
T  21486588 ttgacgagtttga 21486600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 29510169 - 29510062
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||| ||||||| | |||||||||||||||| |||||||| ||  ||| || | ||||| ||| ||||||| ||||||| ||||||||||  |    
T  29510169 cgagtttacgtgtttaggtatcaaaatcgtgttaactctgatgtaaactcaatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactc 29510070  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  29510069 ggtaaact 29510062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 183
Target Start/End: Original strand, 54561219 - 54561338
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| ||||||||||  |||| | ||| |||||||| ||||| ||| |||||| ||||||||||| |||||||  |||||| |||||||||| |     
T  54561219 cgagtttacatttttaggtggcaaaaacatgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgtgtttgaccgagttaacacgt 54561318  T
Q  164 ggtaaactgggtaaaatcgt 183  Q
    | |||||| |||||| ||||    
T  54561319 gttaaactcggtaaactcgt 54561338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 66 - 171
Target Start/End: Complemental strand, 23170832 - 23170727
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcgg 165  Q
    ||||||||||||||||||  ||||  ||||||| ||||| ||||  ||| |||||| |||||||| || ||||||| ||||||| |||||||||||| |     
T  23170832 agtttacgtttttaggtggcaaaaatgtgttaattcggaggtaatttcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacatgtgt 23170733  T
Q  166 taaact 171  Q
    ||||||    
T  23170732 taaact 23170727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 14334367 - 14334490
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||  |||||| |||  |||||||||||||||||||   ||||||| || |||||||| ||||| | |||||||| | ||||||||| ||    
T  14334367 aatcgagtgttaaaacgtaaacttgcccgagtttacgtttttaggtaccaaaatcgcgtaaactcggacgtaaacttgttttttggtaaaatcggaaagt 14334466  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    |   | ||||||| ||||||||||    
T  14334467 tgacctagtttgaccgagttaaca 14334490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 27768513 - 27768620
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||| |    
T  27768513 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacattc 27768612  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  27768613 ggtaaact 27768620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 29966512 - 29966368
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| ||||| |||||||            |||||| |||||||| || ||    
T  29966512 aatcgagtgttaactcgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgtaaactcgg------------tttttggtgaaatcgaaaagt 29966425  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgtctgagtttac 193  Q
    | ||| ||||||| |||||||||||| | |||||| |||||| ||||| ||||||||    
T  29966424 tcgacgagtttgaccgagttaacatgtgttaaactcggtaaactcgtccgagtttac 29966368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 49501285 - 49501178
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  |||||||||  |    
T  49501285 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacactc 49501186  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  49501185 ggtaaact 49501178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 49507350 - 49507243
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  |||||||||  |    
T  49507350 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgacggagttaacactc 49507251  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  49507250 ggtaaact 49507243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 68 - 158
Target Start/End: Complemental strand, 23671473 - 23671383
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaa 158  Q
    ||||||| |||||||   ||||||||||||||||||| ||||| ||| ||| || |||||||| || ||||||| ||||||||| ||||||    
T  23671473 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgagcaagttaa 23671383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 41725564 - 41725669
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcgg 165  Q
    |||||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  |||||||||  |||    
T  41725564 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactcgg 41725663  T
Q  166 taaact 171  Q
    ||||||    
T  41725664 taaact 41725669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 871783 - 871894
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||  | ||   |||||||||||||||||||    ||||||||| |||||||| ||||| ||| ||| || | ||||||||||||    
T  871783 aatcgagtgttaactcgtcgagtttaccgagtttacgtttttaggt-accaaatcgtgtcaactcggaggtaaactcgatttctggtaaaatcggaatgt 871881  T
Q  137 ttgacaagtttga 149  Q
    ||||| |||||||    
T  871882 ttgacgagtttga 871894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 3860314 - 3860230
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||| |||||| | |  |||||||||||||||| |||  |||| |||||||||||||| ||||| ||| ||||||    
T  3860314 aatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 3860230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 121
Target Start/End: Complemental strand, 3869071 - 3868987
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||| |||||| | |  |||||||||||||||| |||  |||| |||||||||||||| ||||| ||| ||||||    
T  3869071 aatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 3868987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 24966622 - 24966526
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||   ||||||||||||||||||| ||||| ||| |||||| | |||| |||| ||||| | ||||||| | ||||||||    
T  24966622 cgagtttacgtgtttaggtaccaaaatcgtgttaactcggaagtaaattcggtttttggtaaaatgggaaggtttgccgagtttgaccaagttaaca 24966526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 69 - 141
Target Start/End: Complemental strand, 41470424 - 41470352
Alignment:
Q  69 ttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgac 141  Q
    |||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| |||||| |||| |||||||    
T  41470424 ttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaattggaaagtttgac 41470352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 5441851 - 5441958
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  5441851 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 5441950  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  5441951 ggtaaact 5441958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 37 - 140
Target Start/End: Original strand, 25013419 - 25013522
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||||||  |||| | ||||||||||||  |||| ||  |||||  ||||||||||| ||    
T  25013419 aatcgagtgttaacacgtaaactcgttcgagtttacgtttttaggtggcaaaaacatgttaactcggagctaaactcaatttttaatgaaatcggaaagt 25013518  T
Q  137 ttga 140  Q
    ||||    
T  25013519 ttga 25013522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 50517193 - 50517300
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||| |||||||   |||||||||||||||  || ||||| ||| ||| || | |||| |||| ||||||| ||||||| ||||||||||  |    
T  50517193 cgagtttacgtgtttaggtaccaaaatcgtgttaactttgaggtaaactcgatttctggtaaaattggaaggtttgacgagtttgaccgagttaacactc 50517292  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  50517293 ggtaaact 50517300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 51321305 - 51321412
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  51321305 cgagtttacatttttaggtacaaaaatcgtgttaactctgacgtaaaatcggtttctggtaaaattggaaggtttaaccagtttgactgagttaacactc 51321404  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  51321405 ggtaaact 51321412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 141
Target Start/End: Original strand, 33138800 - 33138877
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgac 141  Q
    ||||||||||| |||||||   ||||||||||||||||||| ||||| ||| ||| || | ||||||||| |||||||    
T  33138800 cgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgac 33138877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 40487761 - 40487705
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||| ||| ||||||    
T  40487761 gagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttg 40487705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 29855965 - 29856072
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||| ||   |||||||||||||||| || ||||| ||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  29855965 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 29856064  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  29856065 ggtaaact 29856072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 37828182 - 37828075
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| ||||||| |   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  37828182 cgagtttacatttttagatacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 37828083  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  37828082 ggtaaact 37828075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 48261527 - 48261634
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||| || |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  48261527 cgagttgacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 48261626  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  48261627 ggtaaact 48261634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 49834586 - 49834479
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||| |   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  ||||||| |  |    
T  49834586 cgagtttacgtttttagctacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaatactc 49834487  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  49834486 ggtaaact 49834479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 26491225 - 26491119
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    |||||||||| |||||||   ||||||||||||| |  || ||||| ||| ||| || | ||||| ||| ||||||| ||||||| |||||||||||  |    
T  26491225 gagtttacgtgtttaggtaccaaaatcgtgttaaatttgaggtaaactcggtttctggtaaaatcagaaggtttgacgagtttgaccgagttaacatttg 26491126  T
Q  165 gtaaact 171  Q
    |||||||    
T  26491125 gtaaact 26491119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 7e-31; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 37 - 193
Target Start/End: Complemental strand, 8779708 - 8779552
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  8779708 aatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagt 8779609  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgtctgagtttac 193  Q
    ||||| ||||||| | |||||||  | | |||||| |||||| ||||| ||||||||    
T  8779608 ttgacgagtttgaccaagttaactcgtgttaaactcggtaaactcgtccgagtttac 8779552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 21199527 - 21199673
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| |||    ||||||||||||||||||  |||| |||||||||||  | ||||| ||| |||||| ||||||||||| ||    
T  21199527 aatcgagtgttaactcgtaaacttgccaaagtttacgtttttaggtggcaaaaccgtgttaactccaaggtaaactcgatttttggtgaaatcggaaagt 21199626  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||||| | |||||| |||||| ||||    
T  21199627 ttgacgagtttgaccgagttaacatgtgttaaactcggtaaactcgt 21199673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 31996375 - 31996229
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| || ||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  31996375 aatcgagtgttaacacgcaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagt 31996276  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  31996275 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaactcgt 31996229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 1463771 - 1463675
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  1463771 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 1463675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 6788100 - 6788196
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  6788100 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 6788196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 141
Target Start/End: Complemental strand, 7835491 - 7835387
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||||||  |||| |||||||| ||||| ||||| ||| |||||| ||||||||||| ||    
T  7835491 aatcgagtgttaacacgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgttaagtcggaggtaaactcggtttttggtgaaatcggaaagt 7835392  T
Q  137 ttgac 141  Q
    |||||    
T  7835391 ttgac 7835387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 156
Target Start/End: Complemental strand, 10113880 - 10113788
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagtt 156  Q
    ||||||||||| |||||||  ||||| |||||||||||||| ||||| |||||||||| | ||||||||| ||||||| ||||||| ||||||    
T  10113880 cgagtttacgtgtttaggtcctaaaaacgtgttaactcggaggtaaactcgttttttggtaaaatcggaaagtttgacgagtttgaccgagtt 10113788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 37 - 149
Target Start/End: Original strand, 12028948 - 12029060
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||||| |||| |||   || |||| ||||||||| || |||| ||||||||||  || ||||| ||| ||||| ||||||||| |||||    
T  12028948 aatcgagtgttaactcataaacttgtttgactttatgtttttaggggtcaaaaacgtgttaactttgaggtaaactcgatttttattgaaatcgaaatgt 12029047  T
Q  137 ttgacaagtttga 149  Q
    ||||| |||||||    
T  12029048 ttgacgagtttga 12029060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 65 - 149
Target Start/End: Original strand, 13461374 - 13461458
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||||||||| || | |||||||||| |||||||| ||||| ||| |||||| | ||||| ||||||||||| |||||||    
T  13461374 gagtttacgtttttatgtatcaaaatcgtgtcaactcggaggtaaactcggtttttggtaaaatcagaatgtttgacgagtttga 13461458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 66 - 170
Target Start/End: Complemental strand, 34758830 - 34758726
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcgg 165  Q
    |||||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| ||||||||||  |||||||||  |||    
T  34758830 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaattggaaggtttaacaagtttgactgagttaacactcgg 34758731  T
Q  166 taaac 170  Q
    |||||    
T  34758730 taaac 34758726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 195
Target Start/End: Original strand, 3000244 - 3000372
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    ||||||| |||||||   ||||||||||||||||||  ||||| ||| ||| || | ||||||| | ||||||| ||||||| ||||||||||  |  ||    
T  3000244 tttacgtgtttaggtaccaaaatcgtgttaactcgggggtaaattcgatttatggtaaaatcgggaagtttgacgagtttgatcgagttaacactcaata 3000343  T
Q  168 aact-gggtaaaatcgtctgagtttacga 195  Q
    |||| | ||||||||| ||||||||||||    
T  3000344 aactcgtgtaaaatcggctgagtttacga 3000372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 16438706 - 16438813
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||||||||||||| ||| ||||| |||  || || | ||||||||| ||||||| ||||| | ||||||| ||  |    
T  16438706 cgagtttacgtttttaggtacaaaaatcgtgttaacttggaggtaaactcgacttctggtaaaatcggaaggtttgacgagtttaatcgagttagcactc 16438805  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  16438806 ggtaaact 16438813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 31067880 - 31067987
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  31067880 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 31067979  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  31067980 ggtaaact 31067987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 31896085 - 31896192
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||| ||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  31896085 cgagtatacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 31896184  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  31896185 ggtaaact 31896192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 160
Target Start/End: Original strand, 7497548 - 7497642
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  7497548 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgattgagttaaca 7497642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 14262187 - 14262093
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  14262187 agtttacttttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaattggaaggtttaacgagtttgactgagttaaca 14262093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 31975751 - 31975645
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    ||||||| || |||||||   |||||||||||||||| || ||||| ||| ||| |  | ||||||||| ||||||| ||||||| |||||||| |  ||    
T  31975751 gagtttatgtgtttaggtaccaaaatcgtgttaactctgaggtaaactcgatttcttgtaaaatcggaaggtttgacgagtttgaccgagttaagactcg 31975652  T
Q  165 gtaaact 171  Q
    |||||||    
T  31975651 gtaaact 31975645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 21010976 - 21010883
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaa 158  Q
    |||||| | |||||||||||||||  |||||||| ||| | || || ||| |||||| |||||||  |||||||||| ||||| | ||||||||    
T  21010976 gagtttgcatttttaggtgttaaatacgtgttaattcgaaggtcaactcggtttttggtgaaatcaaaatgtttgacgagtttaaccgagttaa 21010883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 1e-29; HSPs: 44)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 191
Target Start/End: Original strand, 1108346 - 1108500
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||||| |   ||||||||||||||||||| ||||| ||||| |||||||| ||||| ||| |||||| ||||||||||| ||    
T  1108346 aatcgagtgttaactcgtaaattcgtctgagtttacgtttttaggtggtaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagt 1108445  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgtctgagttt 191  Q
    ||||| |||||||  ||||||||  | | |||||| | |||| ||||||||||||    
T  1108446 ttgacgagtttgactgagttaacgcgtgttaaactcgataaactcgtctgagttt 1108500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 39 - 152
Target Start/End: Complemental strand, 21248600 - 21248487
Alignment:
Q  39 tcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgttt 138  Q
    ||||||||||| ||||| | |  ||| ||||||||||||||||||| ||||||||||||||| ||| ||||||| ||||||||||||||| |||||||||    
T  21248600 tcgagtgttaaatcgtagactcagactagtttacgtttttaggtgtcaaaatcgtgttaacttggaagtaaaatggttttttgttgaaattggaatgttt 21248501  T
Q  139 gacaagtttgagcg 152  Q
    ||| ||||||||||    
T  21248500 gacgagtttgagcg 21248487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 18954459 - 18954563
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  18954459 aatcgagtgttaactcgtaaattcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggacgtaaactcggtttttggtgaaatcggaaagt 18954558  T
Q  137 ttgac 141  Q
    |||||    
T  18954559 ttgac 18954563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 45 - 183
Target Start/End: Complemental strand, 34751691 - 34751553
Alignment:
Q  45 gttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaag 144  Q
    ||||||||||||||| |  ||||||||||||||||  ||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||||| ||||    
T  34751691 gttaactcgtaaattcgaccgagtttacgtttttaaatggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgccaag 34751592  T
Q  145 tttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| |||||||||| | | |||||| |||||| ||||    
T  34751591 tttgaccgagttaacacgtgttaaactcggtaaactcgt 34751553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 7798494 - 7798617
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||| ||||| |||||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  7798494 aatcgagtattaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagt 7798593  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||| ||||    
T  7798594 ttgacgagtttgaccgagtgaaca 7798617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 34019117 - 34019236
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    ||||||||||||||||| | |  |||||||||||||| |||||  ||||  ||||||||||||| ||||| ||| |||||| ||||||||||| ||||||    
T  34019117 gagtgttaactcgtaaactcgtccgagtttacgttttaaggtggcaaaaatgtgttaactcggaggtaaattcgatttttggtgaaatcggaaagtttga 34019216  T
Q  141 caagtttgagcgagttaaca 160  Q
    | || |||| ||||||||||    
T  34019217 cgaggttgaccgagttaaca 34019236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 43854676 - 43854769
Alignment:
Q  74 tttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    ||||||| ||| ||||| |||||| ||| |||||||||| |||||||| |||||||| ||||||| ||||||||||| ||||||||||| ||||    
T  43854676 tttttagttgtcaaaattgtgttagctcagatgtaaaattgttttttgatgaaatcgaaatgtttaacaagtttgagtgagttaacatgtggta 43854769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 4005088 - 4005184
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  4005088 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 4005184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Complemental strand, 33886953 - 33886841
Alignment:
Q  71 acgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaac 170  Q
    |||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||||||| ||||||| ||||| |||| | | |||||    
T  33886953 acgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaac 33886854  T
Q  171 tgggtaaaatcgt 183  Q
    | |||||| ||||    
T  33886853 tcggtaaactcgt 33886841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 183
Target Start/End: Original strand, 33957297 - 33957409
Alignment:
Q  71 acgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaac 170  Q
    |||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||||||| ||||||| ||||| |||| | | |||||    
T  33957297 acgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagtttgaccgagtgaacacgtgttaaac 33957396  T
Q  171 tgggtaaaatcgt 183  Q
    | |||||| ||||    
T  33957397 tcggtaaactcgt 33957409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 66 - 160
Target Start/End: Complemental strand, 1243404 - 1243310
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  1243404 agtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 1243310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 9192045 - 9192141
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||| ||| ||||||| ||||||| ||||||||||    
T  9192045 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcagaaagtttgacgagtttgaccgagttaaca 9192141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 11579200 - 11579104
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| | | ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  11579200 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaatttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 11579104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 37980081 - 37980018
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactc 101  Q
    |||||||||||||||||||||||||||||| ||||||||||||| || | |||||||||||||||    
T  37980081 aatcgagtgttaactcgtaaatttggacgaatttacgtttttagatg-tcaaatcgtgttaactc 37980018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 41353442 - 41353538
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||| || |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  41353442 cgagtttatgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 41353538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 51106913 - 51107009
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| | ||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  51106913 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggaaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 51107009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 46328434 - 46328541
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| ||| |||| ||||||||| |||| || |||||||  |||||||||  |    
T  46328434 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctgttaaaatcggaaggtttaacgagtttgattgagttaacactc 46328533  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  46328534 ggtaaact 46328541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 8147338 - 8147434
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | |||| | || ||||||| ||||||| ||||||||||    
T  8147338 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaaca 8147434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 26757636 - 26757732
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| || |||||||| || ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  26757636 cgagtttacgtgtttaggtgctaaaaacgagttaactcagaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 26757732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 45273015 - 45273122
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||| |||||||||| || ||||| ||| ||| || | ||||||||| ||||||| |||||||  |||||||||  |    
T  45273015 cgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttgacgagtttgactgagttaacactc 45273114  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  45273115 ggtaaact 45273122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 47371675 - 47371568
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||  ||||||   ||||||||||||||||||| ||||| ||| ||| || | ||||||||| ||||| | ||||||| ||||||||||  |    
T  47371675 cgagtttacgtacttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaaggtttgccgagtttgaccgagttaacactc 47371576  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  47371575 ggtaaact 47371568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 138
Target Start/End: Original strand, 21446808 - 21446909
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcgga-tgtaaaatcgttttttgttgaaatcggaatg 135  Q
    ||||||||||||| ||||||||| ||| ||||||| ||||||| |||| ||||||||||||||  |||  ||||||| | |||||||||||||  |||||    
T  21446808 aatcgagtgttaattcgtaaattcggatgagtttaagttttta-gtgtcaaaatcgtgttaacatggagggtaaaattggtttttgttgaaataagaatg 21446906  T
Q  136 ttt 138  Q
    |||    
T  21446907 ttt 21446909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 5209464 - 5209372
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||| |||||||   ||||||||||||||||||| || || ||| ||| || ||||||| ||| ||||||| ||||||| ||||||||||    
T  5209464 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtcaactcgatttctggtgaaatcagaaagtttgacgagtttgatcgagttaaca 5209372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 40433930 - 40433807
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgtttttt-gttgaaatcggaatg 135  Q
    |||||||||||||||| |||  | | |||||||||   |||| ||||||||||| || |||| | ||| ||||||| ||||||| |||||||||  ||||    
T  40433930 aatcgagtgttaactcttaagctcgaacgagtttatactttttggtgttaaaattgtattaatttgga-gtaaaattgtttttttgttgaaatcaaaatg 40433832  T
Q  136 tttgacaagtttgagcgagttaaca 160  Q
    |||||| ||||||||| ||||||||    
T  40433831 tttgacgagtttgagccagttaaca 40433807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 147
Target Start/End: Original strand, 3593267 - 3593350
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagttt 147  Q
    ||||||||  ||||||||| | ||||||||||||||||||| ||||| ||| ||| |  | ||||||||| |||||||||||||    
T  3593267 cgagtttatatttttaggtatcaaaatcgtgttaactcggaggtaaattcgatttctaataaaatcggaaggtttgacaagttt 3593350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 6313024 - 6313131
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  6313024 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 6313123  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  6313124 ggtaaact 6313131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 15834784 - 15834677
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||| ||| |||||| | |||| |||| |||| || |||||||  |||||||||  |    
T  15834784 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaattggaaggtttaacgagtttgactgagttaacactc 15834685  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  15834684 ggtaaact 15834677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 257 - 335
Target Start/End: Original strand, 21447011 - 21447090
Alignment:
Q  257 tgttaaaatcctattccttttttcagt-tcaatagtccaaagtacttgtcttgtctttacagttaacactttcatgtctt 335  Q
    ||||||||||| ||| ||||||||| | ||||||  |||||||||||| ||||  ||||||||||| |||||||||||||    
T  21447011 tgttaaaatccaattacttttttcaatctcaatatcccaaagtacttgccttgcatttacagttaatactttcatgtctt 21447090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 25612540 - 25612647
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  25612540 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 25612639  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  25612640 ggtaaact 25612647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 29396184 - 29396077
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  29396184 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 29396085  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  29396084 ggtaaact 29396077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 48966590 - 48966484
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    |||||||||| |||||||   |||||||||||||||| || ||||| | | ||| || |||||| |||| ||||||| ||||||| |||||||| |  ||    
T  48966590 gagtttacgtgtttaggtaccaaaatcgtgttaactctgaggtaaacttgatttctgatgaaattggaaggtttgacgagtttgaccgagttaatactcg 48966491  T
Q  165 gtaaact 171  Q
    |||||||    
T  48966490 gtaaact 48966484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 49971696 - 49971610
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt-ttgacaagtttga 149  Q
    |||||||||||||||||||   |||||||||| |||||||| ||||| ||||||| || | |||||| ||||| ||||| |||||||    
T  49971696 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgttttctggtaaaatcgaaatgtgttgacgagtttga 49971610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 5494848 - 5494752
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | ||||| ||| ||||||  |||||||  |||||||||    
T  5494848 cgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcagaaggtttgatgagtttgactgagttaaca 5494752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 160
Target Start/End: Complemental strand, 48177192 - 48177096
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatc-gttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||||||||   |||||||||||||||| || |||||||| ||||| || | |||| |||| |||| || |||||||  |||||||||    
T  48177192 gagtttacgtttttaggtagaaaaatcgtgttaactctgaggtaaaatcggttttctggtaaaattggaaggtttaacgagtttgactgagttaaca 48177096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 3583656 - 3583549
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||    ||||||||||||||  || ||||| ||| ||| |  | ||||||||| ||||||| ||||| | ||||||||||  |    
T  3583656 cgagtttacgtttttaggtaccgaaatcgtgttaacttagaagtaaactcggtttctagtaaaatcggaaagtttgacgagtttaaccgagttaacactc 3583557  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  3583556 ggtaaact 3583549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 8140983 - 8140876
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||||| ||| || | ||||  ||| |||| |  |||||||  |||||||||  |    
T  8140983 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttctggtaaaattagaaggtttaatgagtttgactgagttaacactc 8140884  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  8140883 ggtaaact 8140876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 18798900 - 18799007
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || || ||||  |||||||||  |    
T  18798900 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagattgactgagttaacactc 18798999  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  18799000 ggtaaact 18799007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Complemental strand, 28404045 - 28403939
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    |||||||| |||||||||   ||||||||||||||| | | ||||| ||| ||| |  | |||||| |||||||||| | ||||| ||||||||||  ||    
T  28404045 gagtttacatttttaggtaccaaaatcgtgttaacttgaaggtaaattcggtttctaataaaatcgaaatgtttgacgaatttgaccgagttaacactcg 28403946  T
Q  165 gtaaact 171  Q
    |||||||    
T  28403945 gtaaact 28403939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 29027979 - 29028025
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtg 83  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||    
T  29027979 aatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtg 29028025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 146
Target Start/End: Original strand, 52182347 - 52182429
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtt 146  Q
    |||||||||||||||||||  | ||||||||| || ||||| ||||| ||| ||| || | |||||| |||||||||| ||||    
T  52182347 cgagtttacgtttttaggtactgaaatcgtgtcaattcggaggtaaattcgatttctggtaaaatcgaaatgtttgacgagtt 52182429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 9322258 - 9322181
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgac 141  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||||||    
T  9322258 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttgac 9322181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 27257954 - 27257873
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    |||||||||||||||   |||||||||| ||||| || ||||| | | |||| | | ||||||||||||||||| |||||||    
T  27257954 tttacgtttttaggtaccaaaatcgtgtcaactccgaggtaaacttgattttcggtaaaatcggaatgtttgacgagtttga 27257873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 49453138 - 49453053
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaact 171  Q
    |||||||||||||||| || ||||| ||| ||| ||   |||||  || ||||||||||||||| ||||||||||  |||||||||    
T  49453138 aaaatcgtgttaactctgaggtaaactcgatttctggaaaaatcataaggtttgacaagtttgaccgagttaacactcggtaaact 49453053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 160
Target Start/End: Complemental strand, 35177306 - 35177214
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||| ||||||||||   ||||||||||||| || || ||||| ||| ||| || | ||||||||| | ||||| ||||||| ||||||||||    
T  35177306 tttatgtttttaggtaccaaaatcgtgttaattcagaggtaaactcgatttctgataaaatcggaaggattgacgagtttgaccgagttaaca 35177214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 6e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 33892970 - 33892847
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||||| |  ||| ||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  33892970 aatcgagtgttaacacgtaaattcgttcgaatttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttgatgaaatcggaaagt 33892871  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  33892870 ttgacgagtttgaccgagttaaca 33892847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 178
Target Start/End: Complemental strand, 40767518 - 40767374
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatc---gttttttgttgaaatcggaa 133  Q
    |||| |||| |||||||||||||| |||||||||| ||||||| |||| ||||||||||||| || || ||||||||    ||||||||||||||| |||    
T  40767518 aatccagtgctaactcgtaaatttagacgagtttaggtttttaagtgtcaaaatcgtgttaattcagaggtaaaatcatttttttttgttgaaatcagaa 40767419  T
Q  134 tgtttgacaagtttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    ||||| || ||||||||||||||| || | ||| |||| ||||||    
T  40767418 tgtttaactagtttgagcgagttagcacgtggtgaactcggtaaa 40767374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 44 - 160
Target Start/End: Original strand, 3032287 - 3032402
Alignment:
Q  44 tgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaa 143  Q
    |||||||| ||||| | | |||||||||||| | ||||||| |||||||| ||| |||||| ||||||||||||||||||||||||  |||||||| | |    
T  3032287 tgttaactagtaaactcgaacgagtttacgtctgtaggtgtcaaaatcgtattagctcggaggtaaaatcgttttttgttgaaatcataatgtttg-cga 3032385  T
Q  144 gtttgagcgagttaaca 160  Q
    |||||||||||||||||    
T  3032386 gtttgagcgagttaaca 3032402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 2675202 - 2675079
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||  |||||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| |||||||| || ||    
T  2675202 aatcgagtgttaatacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcgaaaagt 2675103  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  2675102 ttgacgagtttgaccgagttaaca 2675079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 21238887 - 21238764
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||||| |  ||| ||||||||||||| ||  |||| |||||||||||||| ||||| ||| |||||| | ||||||||| ||    
T  21238887 aatcgagtgttaacacgtaaattcgtccgattttacgtttttagatggcaaaaacgtgttaactcggaggtaaactcggtttttggtaaaatcggaaagt 21238788  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  21238787 ttgacgagtttgaccgagttaaca 21238764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 7125266 - 7125170
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  7125266 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 7125170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 25868772 - 25868876
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  |||||||| |||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  25868772 aatcgagtgttaacacgtaaactcgcccgagtttatgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcggaaagt 25868871  T
Q  137 ttgac 141  Q
    |||||    
T  25868872 ttgac 25868876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 37 - 155
Target Start/End: Original strand, 34909565 - 34909683
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||||||  |||| |||||||| ||||| ||||| ||| | |||| ||||||||||| ||    
T  34909565 aatcgagtgttaacacgtaaactcgctcgagtttacgtttttaggtggcaaaaacgtgttaattcggaggtaaactcggtctttggtgaaatcggaaagt 34909664  T
Q  137 ttgacaagtttgagcgagt 155  Q
    ||||  ||||||| |||||    
T  34909665 ttgaggagtttgaccgagt 34909683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 68 - 198
Target Start/End: Complemental strand, 5651284 - 5651153
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    ||||||| |||||||   ||||||||||||||||||| ||||| ||| ||| || |||||| | || ||||||| ||||||| ||||||||||  | |||    
T  5651284 tttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcgatttctggtgaaattgaaaagtttgacgagtttgaccgagttaacactcagta 5651185  T
Q  168 aact-gggtaaaatcgtctgagtttacgagtt 198  Q
    |||| | ||||||||| | |||||||||||||    
T  5651184 aactcgtgtaaaatcggccgagtttacgagtt 5651153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 195
Target Start/End: Complemental strand, 16497864 - 16497705
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| |     |||||||||||||||||||  ||||  ||||||| ||  |  |||| ||| |||||| ||||||||||||||    
T  16497864 aatcgagtgttaactcgtaaactcatttgagtttacgtttttaggtgccaaaaatgtgttaattcaaagataaactcgatttttgctgaaatcggaatgt 16497765  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaact-gggtaaaatcgtctgagtttacga 195  Q
    ||||| ||||||| ||| |||||||| | ||||||   ||||||||| | ||||||||||    
T  16497764 ttgacgagtttgaccgacttaacatgtgttaaactcatgtaaaatcgacagagtttacga 16497705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 31913471 - 31913605
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||| ||||||||||||||||| |  ||| |||| |||||||| ||| ||||  ||||||||| ||| ||||| ||| |||||| |||||||| |||||    
T  31913471 aatcgtgtgttaactcgtaaattcgttcgaatttatgtttttagatgtcaaaaatgtgttaacttggaggtaaactcgatttttggtgaaatcgaaatgt 31913570  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaact 171  Q
    | | | | ||||| |||||||||||| | ||||||    
T  31913571 tcgtcgaatttgatcgagttaacatgtgttaaact 31913605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 29758683 - 29758790
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    |||||||||||||| || ||   ||||||||||||||||||| | ||||||||||||||||||| ||| | | | ||| || | ||||||||||||||||    
T  29758683 gagtgttaactcgttaagtttatcgagtttacgtttttaggtatcaaaatcgtgttaactcggaggtagatttgatttctggt-aaatcggaatgtttga 29758781  T
Q  141 caagtttga 149  Q
    | |||||||    
T  29758782 cgagtttga 29758790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 39852819 - 39852926
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| |||||| | |||| |||| |||| || |||||||  |||||||||  |    
T  39852819 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaattggaaggtttaacgagtttgacggagttaacactc 39852918  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  39852919 ggtaaact 39852926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 66 - 170
Target Start/End: Original strand, 5949562 - 5949666
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcgg 165  Q
    |||||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |||    
T  5949562 agtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcgg 5949661  T
Q  166 taaac 170  Q
    |||||    
T  5949662 taaac 5949666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 28623268 - 28623172
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| ||||||||||||||  |||| ||| ||| || | |||| | || ||||||| ||||||| ||||||||||    
T  28623268 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggagataaactcgatttctggtaaaattgcaaagtttgacgagtttgaccgagttaaca 28623172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 4240219 - 4240112
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||||||  |||||||||||||||| || ||||| ||  ||| || | ||||||||| |||| || |||||||   ||||||||  |    
T  4240219 cgagtttacgtttttaggtgcaaaaatcgtgttaactctgaggtaaactccgtttctggtaaaatcggaaggtttaacgagtttgacaaagttaacactc 4240120  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  4240119 ggtaaact 4240112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 37014303 - 37014410
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| | || |||| || ||||||| ||||||||||  |    
T  37014303 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgaccgagttaacactc 37014402  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  37014403 ggtaaact 37014410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 40013458 - 40013351
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||| || | |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| ||||| ||||  |||||||||  |    
T  40013458 cgagtttacatttttaagtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacaagattgactgagttaacactc 40013359  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  40013358 ggtaaact 40013351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 1460899 - 1460792
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||| |||||||||| || ||||| ||| ||| || | ||||||||| | || || |||||||  |||||||||  |    
T  1460899 cgagtttacgtttttaggtacaaaaattgtgttaactcagaggtaaactcggtttctggtaaaatcggaaggcttaacgagtttgactgagttaacactc 1460800  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  1460799 ggtaaact 1460792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 13926380 - 13926487
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| |  |||||||   ||||||||  |    
T  13926380 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaaggagtttgactaagttaacactc 13926479  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  13926480 ggtaaact 13926487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 65 - 104
Target Start/End: Complemental strand, 15286634 - 15286595
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcgga 104  Q
    |||||||||||||||||||| |||||||||| ||||||||    
T  15286634 gagtttacgtttttaggtgtcaaaatcgtgtaaactcgga 15286595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 16800706 - 16800824
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    ||||||||||||||||| ||   ||||||||| ||||||||||||||||  || |||||| | | || || |||  ||||| ||||||  ||||||||||    
T  16800706 gagtgttaactcgtaaactttttcgagtttacatttttaggtgttaaaaatgttttaacttgaaggtgaactcg-gttttggtgaaattagaatgtttga 16800804  T
Q  141 caagtttgagcgagttaaca 160  Q
    | ||||||| ||| ||||||    
T  16800805 cgagtttgaccgacttaaca 16800824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 37798221 - 37798114
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||| ||||  |||||||| |||||||||||  | ||||| ||  ||| || | |||||| || ||||||| ||||||| ||||||||||  |    
T  37798221 cgagtttacgtgtttatctgttaaaaacgtgttaactcaaaggtaaactcaatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaacactc 37798122  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  37798121 ggtaaact 37798114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 158
Target Start/End: Complemental strand, 4550011 - 4549917
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaa 158  Q
    ||||||||||| |||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||    
T  4550011 cgagtttacgtgtttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaa 4549917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 141
Target Start/End: Complemental strand, 16548946 - 16548869
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgac 141  Q
    |||||||||||||||||||   |||||||||| |||||||| ||||| ||  ||| || | |||||| ||||||||||    
T  16548946 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcaatttctggtaaaatcgaaatgtttgac 16548869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 37 - 110
Target Start/End: Complemental strand, 24258611 - 24258538
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaa 110  Q
    |||||||||||||||| |||||| |   || ||||||||||||||||  |||| ||||| |||||||| |||||    
T  24258611 aatcgagtgttaactcctaaattcgcctgaatttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaa 24258538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 65 - 102
Target Start/End: Complemental strand, 29716891 - 29716854
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcg 102  Q
    |||||||||||||||||| | |||||||||||||||||    
T  29716891 gagtttacgtttttaggtatcaaaatcgtgttaactcg 29716854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 6e-28; HSPs: 35)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 38413582 - 38413459
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| ||||| |||||||| ||||| ||| |||||| ||||||||||| ||    
T  38413582 aatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagt 38413483  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  38413482 ttgacgagtttgaccgagttaaca 38413459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 37 - 141
Target Start/End: Original strand, 12877659 - 12877763
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  12877659 aatcgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttgatgaaatcggaaagt 12877758  T
Q  137 ttgac 141  Q
    |||||    
T  12877759 ttgac 12877763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 13898449 - 13898595
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |   ||||||||||||||||| |  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  13898449 aatcgagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagt 13898548  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  13898549 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaactcgt 13898595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 14039066 - 14039212
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |   ||||||||||||||||| |  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  14039066 aatcgagtgttaacacgtaaactcgtctgagtttacgtttttaggcggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagt 14039165  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  14039166 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaactcgt 14039212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 41 - 160
Target Start/End: Complemental strand, 11153474 - 11153355
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    ||||||||||||||||| | |||||| |||||||||||||||| | |||||||||||||||||| ||||| ||| ||| || | ||||||  |||||||     
T  11153474 gagtgttaactcgtaaactcggacgaatttacgtttttaggtgctgaaatcgtgttaactcggaggtaaactcggtttctggtaaaatcgagatgtttgg 11153375  T
Q  141 caagtttgagcgagttaaca 160  Q
    | ||||||| ||||||||||    
T  11153374 cgagtttgaccgagttaaca 11153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 64 - 178
Target Start/End: Original strand, 3991773 - 3991887
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| |||||||| || ||||||| ||||||| |||||||||| |     
T  3991773 cgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttggtgaaatcgaaaagtttgacgagtttgaccgagttaacacgt 3991872  T
Q  164 ggtaaactgggtaaa 178  Q
    | |||||| ||||||    
T  3991873 gttaaactcggtaaa 3991887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 19948511 - 19948657
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||  ||||| | |  ||||||||| ||||||||||  |||| |||||||||||||| ||||| ||  |||||| ||||||||||| ||    
T  19948511 aatcgagtgttaacatgtaaactcgcccgagtttacatttttaggtggcaaaaacgtgttaactcggaggtaaactcagtttttggtgaaatcggaaagt 19948610  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  19948611 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaactcgt 19948657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 46 - 178
Target Start/End: Original strand, 33262835 - 33262967
Alignment:
Q  46 ttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagt 145  Q
    |||||||||||| | |  ||||||||||||||||||||  |||| ||||| |||||| | ||||| ||| |||||| ||||||||||| ||||||| |||    
T  33262835 ttaactcgtaaactcgttcgagtttacgtttttaggtggcaaaaacgtgtaaactcgaaggtaaactcggtttttggtgaaatcggaaagtttgacgagt 33262934  T
Q  146 ttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    ||||  ||||||||| | |||||||| ||||||    
T  33262935 ttgactgagttaacacgtggtaaactcggtaaa 33262967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 2103447 - 2103567
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||||| |||| | || | |||||| |||||||  | | |||||||||||||||  ||||||||| ||||||  ||||||||| ||||||    
T  2103447 aatcgagtgttaactcataaagtcgggcaagtttatgttttta--tctcaaaatcgtgttaacttagatgtaaaaccgttttg-gttgaaatcagaatgt 2103543  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||  ||||||||||||||||||    
T  2103544 ttgatgagtttgagcgagttaaca 2103567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 18900029 - 18899933
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| |  | ||||||||| ||||||| ||||||| ||||||||||    
T  18900029 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaaca 18899933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 41978841 - 41978933
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||||||  |||| | |||||| ||||| ||||| ||| |||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  41978841 tttacgtttttaggtggcaaaaacatgttaattcggaggtaaactcggtttttgatgaaatcggaaagtttgacgagtttgaccgagttaaca 41978933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 252 - 336
Target Start/End: Complemental strand, 37655104 - 37655019
Alignment:
Q  252 ttttctgttaaaatcctattccttttttcagttcaa-tagtccaaagtacttgtcttgtctttacagttaacactttcatgtcttg 336  Q
    |||| ||||| ||||  |||||||||||||  || | |||||||||||||||||||||||||||| |||||||||||| |||||||    
T  37655104 ttttttgttagaatctaattccttttttcaagtctagtagtccaaagtacttgtcttgtctttacggttaacactttcttgtcttg 37655019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 5842911 - 5842850
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatc 129  Q
    |||| |||||||||| | |||||| |||||||| ||| ||||||||||||||||||||||||    
T  5842911 tttatgtttttaggtataaaaatcatgttaacttggaggtaaaatcgttttttgttgaaatc 5842850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 10657879 - 10657975
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||||| |||||| | |||| |||| |||| || ||||| |  |||||||||    
T  10657879 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcgatttttggtaaaattggaaggtttaacgagtttaactgagttaaca 10657975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 35404420 - 35404324
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||    ||||||||||||||  || ||||| ||| |||||| | |||| |||| ||||||| ||||||| ||||||||||    
T  35404420 cgagtttacgtttttaggtaccgaaatcgtgttaacttagaggtaaactcggtttttggtaaaattggaaagtttgacgagtttgaccgagttaaca 35404324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 379383 - 379486
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    |||||||||||||||   |||||||||||||||| || ||||| ||| |||||| | ||||||||| | || || |||||||  |||||||||  |||||    
T  379383 tttacgtttttaggtacaaaaatcgtgttaactctgaggtaaattcggtttttgataaaatcggaaggcttaacgagtttgactgagttaacactcggta 379482  T
Q  168 aact 171  Q
    ||||    
T  379483 aact 379486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 18177720 - 18177827
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  18177720 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaagtttaacgagtttgacagagttaacactc 18177819  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  18177820 ggtaaact 18177827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 28740047 - 28739940
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||| ||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  28740047 cgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 28739948  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  28739947 ggtaaact 28739940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 28845034 - 28845141
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||| ||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  28845034 cgagtttatgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaattggaaggtttaacgagtttgactgagttaacactc 28845133  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  28845134 ggtaaact 28845141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Original strand, 34353062 - 34353137
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgt-tgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||| ||||||||| || |||||||||||||||   ||||||| |||||||||||| |||||||||||| ||||    
T  34353062 aaaatcatgttaactcagaggtaaaatcgtttttttactgaaatctgaatgtttgacacgtttgagcgagtcaaca 34353137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 3575291 - 3575397
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    ||||||||||||||||||   |||||| ||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  ||    
T  3575291 gagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactcg 3575390  T
Q  165 gtaaact 171  Q
    |||||||    
T  3575391 gtaaact 3575397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 68 - 169
Target Start/End: Complemental strand, 2308811 - 2308710
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    |||||||||||| ||   ||||||||||||||||||| ||||| ||| ||| || | |||||  || ||||||||||||||| | ||||||||  |||||    
T  2308811 tttacgtttttatgtaccaaaatcgtgttaactcggaggtaaattcggtttgtggtaaaatcaaaaagtttgacaagtttgaccaagttaacactcggta 2308712  T
Q  168 aa 169  Q
    ||    
T  2308711 aa 2308710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 15224234 - 15224326
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||| |||||||   |||||||||||||||| || ||||| ||| ||| || |||||||| || ||||||| ||||||| ||| ||||||    
T  15224234 tttacgtgtttaggtaccaaaatcgtgttaactcagaggtaaactcgatttctggtgaaatcgaaaagtttgacgagtttgaccgaattaaca 15224326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 40829636 - 40829732
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||| ||| ||||||||| | ||||||||||||||||||| ||||| ||| ||| || | |||| | || ||||||| | ||||| ||||||||||    
T  40829636 cgagtctacatttttaggtatcaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatagaaaggtttgacgaatttgaccgagttaaca 40829732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 101
Target Start/End: Complemental strand, 43318877 - 43318813
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactc 101  Q
    |||||||||||||||||| || | |  |||||||||||||||| ||| ||||| |||||||||||    
T  43318877 aatcgagtgttaactcgttaactcgttcgagtttacgtttttatgtgctaaaaacgtgttaactc 43318813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 92 - 160
Target Start/End: Complemental strand, 45161206 - 45161138
Alignment:
Q  92 gtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||| |||||||| ||||| ||| |||||| ||||||||||| ||||||| |||| || ||||||||||    
T  45161206 gtgtaaactcggaggtaaactcggtttttggtgaaatcggaaagtttgacgagttcgaccgagttaaca 45161138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 147
Target Start/End: Complemental strand, 3858519 - 3858440
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagttt 147  Q
    |||||||||||| |||| ||||| |||| |||| | | ||||| ||| |||||| | ||||||||||||||||| |||||    
T  3858519 tttacgtttttaagtgtcaaaattgtgtcaacttgaaggtaaactcgatttttggtaaaatcggaatgtttgacgagttt 3858440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 7027352 - 7027459
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| | || |||| || |||||||  |||||||||  |    
T  7027352 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgactgagttaacactc 7027451  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  7027452 ggtaaact 7027459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 171
Target Start/End: Complemental strand, 31847315 - 31847212
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    ||||||||||||||| |||||||| || ||||||||| ||||| ||  ||| || | ||||| ||| ||||||| |||| || ||| ||||||  |||||    
T  31847315 tttacgtttttaggtattaaaatcatggtaactcggaggtaaactctatttctgataaaatcagaaggtttgacgagttcgaccgaattaacactcggta 31847216  T
Q  168 aact 171  Q
    ||||    
T  31847215 aact 31847212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 183
Target Start/End: Complemental strand, 43318810 - 43318743
Alignment:
Q  116 tttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    |||||| | ||||||||| ||||||| ||||||| |||||||||||| | |||||| |||||| ||||    
T  43318810 tttttggtaaaatcggaaagtttgacgagtttgaccgagttaacatgtgttaaactcggtaaactcgt 43318743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 30850271 - 30850325
Alignment:
Q  67 gtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||||||  |||||||| | |||||||| ||||| ||||||||||    
T  30850271 gtttacgtttttaggtgccaaaatcgtataaactcggaggtaaattcgttttttg 30850325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 158
Target Start/End: Complemental strand, 37655278 - 37655197
Alignment:
Q  76 tttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaa 158  Q
    ||||||||||||||||||||||||||| |  |||||||  |||||||||||||   |||||||||  |||||||  |||||||    
T  37655278 tttaggtgttaaaatcgtgttaactcgaagttaaaatc-atttttgttgaaattataatgtttgatgagtttgaatgagttaa 37655197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 15926378 - 15926463
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||||||||| |||   |||||||||| |||||||| || || ||| ||| || | |||||| |||||||||| |||||||    
T  15926378 cgagtttacgttttttggtaccaaaatcgtgtcaactcggaggttaactcgatttctggtaaaatcgcaatgtttgacgagtttga 15926463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 141
Target Start/End: Original strand, 24025852 - 24025925
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgac 141  Q
    |||| |||||||||||| |||| |||||||||| |||  |||| ||| |||||| | ||||| |||||||||||    
T  24025852 tttaagtttttaggtgtcaaaaacgtgttaacttggagataaactcggtttttggtaaaatcagaatgtttgac 24025925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 26789234 - 26789330
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||| || |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  26789234 cgagttgacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 26789330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 2e-27; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 171
Target Start/End: Original strand, 31174682 - 31174816
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||| ||||||||| ||||||   | |||||||| ||||||||||| |||||| |||||| ||||| ||||||| |||||||||| ||||| ||||||    
T  31174682 aatcgattgttaactcataaattcaaatgagtttacatttttaggtgtcaaaatcatgttaaatcggaggtaaaatagttttttgttcaaatcagaatgt 31174781  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaact 171  Q
    ||||| |||||||| ||||||||| | ||||||||    
T  31174782 ttgacgagtttgagtgagttaacacgtggtaaact 31174816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 21024039 - 21024162
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||||| |  |||||||||| |||||||||  |||| |||||||||||| | ||||| ||| |||||| ||||||||||| ||    
T  21024039 aatcgagtgttaacacgtaaattcgcccgagtttacgattttaggtgacaaaaacgtgttaactcgaaggtaaactcggtttttggtgaaatcggaaagt 21024138  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  21024139 ttgacgagtttgaccgagttaaca 21024162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 37 - 193
Target Start/End: Original strand, 35313530 - 35313688
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||| ||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  35313530 aatcgagtgttaacacgtaaactcgcccgagtttacgtttttagatggcaaaaccgtgttaactcggaggtaaattcggtttttggtgaaatcggaaagt 35313629  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaact--gggtaaaatcgtctgagtttac 193  Q
    ||||  ||||||| |||||||||| | | ||||||  | ||||| ||||||||||||||    
T  35313630 ttgatgagtttgaccgagttaacacgtgttaaactcggagtaaactcgtctgagtttac 35313688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 14732422 - 14732276
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  | ||||||||||||||||||  |||| |||||||||||||| ||||| | | |||||| ||||||||||| ||    
T  14732422 aatcgagtgttaacacgtaaactcgctcaagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaacttggtttttggtgaaatcggaaagt 14732323  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| ||||| |||| | | |||||| |||||| ||||    
T  14732322 ttgacgagtttgaccgagtgaacacgtgttaaactcggtaaactcgt 14732276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 34656578 - 34656724
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||  | | |  |||||||||||||||||||| ||||| ||||| || ||||| ||||| ||| |||||| |||||||| || ||    
T  34656578 aatcgagtgttaactcgtgtactcgtccgagtttacgtttttaggtggtaaaaacgtgtaaattcggaagtaaattcggtttttggtgaaatcgaaaagt 34656677  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  34656678 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaactcgt 34656724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 37 - 178
Target Start/End: Original strand, 19594184 - 19594324
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||| |||||||||||| | |  ||||||||||||||||| ||  |||| ||||| |||| |||  |||| ||| |||||| ||||||||||| ||    
T  19594184 aatcgagttttaactcgtaaactcgcccgagtttacgtttttagatggcaaaa-cgtgtaaactaggagataaactcggtttttggtgaaatcggaaagt 19594282  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    ||||| ||||||| |||||||||| | | |||||| ||||||    
T  19594283 ttgacgagtttgaccgagttaacacgtgttaaactcggtaaa 19594324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 76 - 160
Target Start/End: Original strand, 6268513 - 6268597
Alignment:
Q  76 tttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||| |||| |||||||||||||||||||| | | |||||| ||||||  ||||||||||| ||||||| ||||||||||    
T  6268513 tttaggtgtcaaaaacgtgttaactcggatgtaaactaggtttttggtgaaattagaatgtttgacgagtttgaccgagttaaca 6268597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 14741426 - 14741522
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| |  | ||||||||| ||||||| ||||||| ||||||||||    
T  14741426 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctagtaaaatcggaaagtttgacgagtttgaccgagttaaca 14741522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 4639974 - 4639878
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||  ||| || | |||||||||  |||||| ||||||| ||||||||||    
T  4639974 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactctatttctggtaaaatcggaaattttgacgagtttgaccgagttaaca 4639878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 140
Target Start/End: Complemental strand, 37392751 - 37392648
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||||| |  ||||||||||||||||||||  |||| | ||| ||||||||  |||| | | |||||| ||||||| ||| ||    
T  37392751 aatcgagtgttaactcgtaaattcgtccgagtttacgtttttaggtggcaaaaacatgtaaactcggagataaacttgatttttggtgaaatcagaaagt 37392652  T
Q  137 ttga 140  Q
    ||||    
T  37392651 ttga 37392648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 65 - 149
Target Start/End: Complemental strand, 11735289 - 11735205
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||| ||||||||   ||||||||||||||||||| ||||| ||| ||| || | ||||||||||||||| | |||||||    
T  11735289 gagtttacgattttaggtcccaaaatcgtgttaactcggaggtaaactcgatttctggtaaaatcggaatgtttgccgagtttga 11735205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 109
Target Start/End: Original strand, 27148818 - 27148890
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaa 109  Q
    ||||||||||||||||| ||| ||   ||||||||||||||||||| | ||||||||||||| ||||| ||||    
T  27148818 aatcgagtgttaactcgcaaagtttatcgagtttacgtttttaggtatcaaaatcgtgttaaatcggaggtaa 27148890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 28034606 - 28034510
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||| ||   |||||||||||||||| |||||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  28034606 cgagtttacgtttttatgtacaaaaatcgtgttaactctgatgtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 28034510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 510093 - 510200
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  510093 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 510192  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  510193 ggtaaact 510200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 18838857 - 18838964
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||   ||||||||| |    
T  18838857 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactaagttaacattc 18838956  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  18838957 ggtaaact 18838964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 28342758 - 28342865
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  28342758 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 28342857  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  28342858 ggtaaact 28342865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 39784554 - 39784661
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  39784554 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgacagagttaacactc 39784653  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  39784654 ggtaaact 39784661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 44256513 - 44256406
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||| |   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  |||||||||  |    
T  44256513 cgagtttacgtttttagatacaaaaatcgtgttaactctgaggtaaactcgatttctggtaaaatcggaaggtttaacgagtttgactgagttaacactc 44256414  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  44256413 ggtaaact 44256406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Complemental strand, 33497193 - 33497108
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||| |||||| || | |||||||||| |||||||| ||||| ||| ||| || | |||| |||||||||||| |||||||    
T  33497193 cgagtttacatttttaagtatcaaaatcgtgtcaactcggaggtaaactcgatttctgataaaattggaatgtttgacgagtttga 33497108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 40460472 - 40460376
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||| ||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  40460472 cgagtttacgcttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 40460376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 29585961 - 29586068
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| |||  | | ||||||||| |||| |  |||||||  |||||||||  |    
T  29585961 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaagtcggtttcgggtaaaatcggaaggtttaatgagtttgactgagttaacactc 29586060  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  29586061 ggtaaact 29586068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 29614553 - 29614446
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| | || |||| || |||||||  |||||||||  |    
T  29614553 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattgaaaggtttaacgagtttgactgagttaacactc 29614454  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  29614453 ggtaaact 29614446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 37328354 - 37328461
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||||||||||||||  | ||||| ||| ||| || | ||||||||| |||| ||  ||||||  |||||||||  |    
T  37328354 cgagtttacgtttttaggtacaaaaatcgtgttaactctaaggtaaactcgatttctggtaaaatcggaaggtttaacgtgtttgactgagttaacactc 37328453  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  37328454 ggtaaact 37328461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 38910454 - 38910577
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||| ||||||||||||||| ||    ||| ||||||||||||| ||  || | ||||| |||||| | ||||  ||| |||||| ||||||||||| ||    
T  38910454 aatcaagtgttaactcgtaagttcacccgaatttacgtttttagatggcaagaacgtgtaaactcgaaggtaagctcggtttttggtgaaatcggaaagt 38910553  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| || |||| ||||||||||    
T  38910554 ttgacgagattgaccgagttaaca 38910577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 65 - 171
Target Start/End: Original strand, 41827776 - 41827882
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcg 164  Q
    ||||||||||||||||||   |||||||||||||||| || ||||| ||  ||| || | ||||| |||  ||| ||||||||||  |||||||||  ||    
T  41827776 gagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatcagaagatttaacaagtttgactgagttaacactcg 41827875  T
Q  165 gtaaact 171  Q
    |||||||    
T  41827876 gtaaact 41827882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 12740817 - 12740902
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||| | | || | |||| |||| ||||||| |||||||    
T  12740817 cgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtgtctggtaaaattggaaggtttgacgagtttga 12740902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 26201886 - 26201805
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||| |||||||||   |||||||||| |||||||| ||||| ||  || ||| | ||||||||||||||||| |||||||    
T  26201886 tttacatttttaggtaccaaaatcgtgtaaactcggaggtaaactcaattattgctaaaatcggaatgtttgacgagtttga 26201805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 48136986 - 48136890
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||  ||| || | ||||  ||| ||||||| |||||||  |||||||||    
T  48136986 cgagtttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcagtttctggtaaaattagaaggtttgacgagtttgactgagttaaca 48136890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 32)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 37 - 183
Target Start/End: Complemental strand, 9818692 - 9818546
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||| |||||| | |  ||||||||||||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  9818692 aatcgagtgttaacacgtaaactcgcccgagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaaagt 9818593  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| ||||||| ||||| |||| | | |||||| |||||| ||||    
T  9818592 ttgacgagtttgaccgagtgaacacgtgttaaactcggtaaactcgt 9818546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 8598659 - 8598755
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  8598659 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 8598755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 49296116 - 49296212
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| ||| || | |||||| || ||||||| ||||||| ||||||||||    
T  49296116 cgagtttacgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttaaca 49296212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 40064251 - 40064397
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||| ||||||||| |  ||||||||||||||||||||  |||| ||||| |||| ||| ||||| |   |||||| |||||||| || ||    
T  40064251 aatcgagtgttaattcgtaaattcgtccgagtttacgtttttaggtggcaaaaacgtgtaaacttggaggtaaatttagtttttggtgaaatcgaaaagt 40064350  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
    ||||| | ||||| | |||||||| | | |||||| |||||| ||||    
T  40064351 ttgacgaatttgaccaagttaacacgtgttaaactcggtaaactcgt 40064397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 16155168 - 16155260
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||   |||||||||||||||| || ||||| ||| |||||| | |||| |||| ||||||| ||||||| ||||||||||    
T  16155168 tttacgtttttaggtaccaaaatcgtgttaactctgaggtaaactcggtttttgataaaattggaaggtttgacgagtttgaccgagttaaca 16155260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 53835962 - 53836058
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||| ||||| |||||||||| ||| ||||| | | ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  53835962 cgagtttacgtgtttaggtgctaaaaacgtgttaacttggaggtaaacttgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 53836058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 4962832 - 4962725
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||||||||||| | ||||||||||||||| ||| ||||| ||| |||    | |||||| || ||||||| ||||||| ||||||||||  |    
T  4962832 cgagtttacgtttttaggtatcaaaatcgtgttaacttggaggtaaactcgatttcaagtaaaatcgaaaggtttgacgagtttgaccgagttaacactc 4962733  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  4962732 ggtaaact 4962725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 66 - 149
Target Start/End: Original strand, 7665593 - 7665676
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||||||||| |   ||||||||||||||||||| ||||| ||| |||||| | |||||||||| |||||| |||||||    
T  7665593 agtttacgtttttagctaccaaaatcgtgttaactcggaggtaaactcgatttttggtaaaatcggaatatttgacgagtttga 7665676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 23753142 - 23753035
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| |||||| | |||| |||| |||| || |||||||  |||||||||  |    
T  23753142 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttttggtaaaattggaaggtttaaccagtttgactgagttaacactc 23753043  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  23753042 ggtaaact 23753035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 41 - 160
Target Start/End: Original strand, 37832549 - 37832668
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    ||||||||||||||||| | |  ||||||||||||||||||||  |||| ||||| || |||||  |||| |   |||||| ||||||| ||| ||||||    
T  37832549 gagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtgtaaattcggagataaacttagtttttggtgaaatcagaaagtttga 37832648  T
Q  141 caagtttgagcgagttaaca 160  Q
    | ||||||| ||||||||||    
T  37832649 cgagtttgaccgagttaaca 37832668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 49293776 - 49293899
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| ||| | || | | |  |||| ||| |||||| ||||||||||| ||    
T  49293776 aatcgagtgttaactcgtaaactcgtccgagtttacgtttttaggtggcaaaaacgtataaatttgaaaataaactcgatttttggtgaaatcggaaagt 49293875  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||| ||||||    
T  49293876 ttgacgagtttgaccgaattaaca 49293899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 22489587 - 22489489
Alignment:
Q  62 gacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||| ||||||||  |||| |||||||| || |||||||| ||| ||| || | ||||||||| |||| || ||||||| ||||||||||    
T  22489587 gacgagtttacgtgtttaggtgccaaaaacgtgttaaatcagatgtaaactcgatttctggtaaaatcggaaggtttaacgagtttgaccgagttaaca 22489489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 37 - 183
Target Start/End: Original strand, 29690605 - 29690750
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||||| |   |  ||||||||||||||||| ||||  || |||| |||||  |||| | | |||||| ||||||| ||||||    
T  29690605 aatcgagtgttaactcgtaaattcgtttgtatttacgtttttaggtgtcaaaaatgtattaattcggagataaatttggtttttg-tgaaatcagaatgt 29690703  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgt 183  Q
     |||| ||||||| |||||||||| | | |||||| |||||| ||||    
T  29690704 atgacgagtttgaccgagttaacacgtgttaaacttggtaaactcgt 29690750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 19387018 - 19386862
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||||||| |||  |   |||||||||||| ||||||||| ||||  ||||||||||||||||||| ||  || ||| | |||| |||||||    
T  19387018 aatcgagtgttaactcataatctcatacgagtttacgtatttaggtgtcaaaaatgtgttaactcggatgtaaactcaattattgataaaattggaatgt 19386919  T
Q  137 ttgacaagtttgagcgagttaacatgcggtaaactgggtaaaatcgtctgagtttacg 194  Q
     |||  ||||||| |||||||||| | | ||||||  ||||| ||| | |||||||||    
T  19386918 ctga-gagtttgaccgagttaacacgtgttaaacttcgtaaactcgaccgagtttacg 19386862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 50761853 - 50761757
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||| | ||| || |||||| |||| |||| || |||||||  |||||||||    
T  50761853 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatagatttctggtgaaattggaaggtttaacgagtttgactgagttaaca 50761757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 20833344 - 20833451
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || ||||| ||  ||| || | ||||||||| |||| || |||||||  |||||||||  |    
T  20833344 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcagtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactc 20833443  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  20833444 ggtaaact 20833451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 21386585 - 21386478
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| ||||||||| | |||||||||||||||  || ||||| ||| ||| || | |||||| || ||||||| ||||||| |||||| |||  |    
T  21386585 cgagtttacatttttaggtatcaaaatcgtgttaacttagaggtaaactcgatttctggtaaaatcgaaaagtttgacgagtttgaccgagttgacactc 21386486  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  21386485 ggtaaact 21386478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 25049871 - 25049956
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    |||||||||||||||||||   |||||||||| |||||||| ||||| ||| ||| |  | ||||||||||||||||  |||||||    
T  25049871 cgagtttacgtttttaggtaccaaaatcgtgtcaactcggaggtaaactcgatttctagtaaaatcggaatgtttgatgagtttga 25049956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 171
Target Start/End: Original strand, 33693278 - 33693363
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaact 171  Q
    ||||||||||||||| ||| ||||| ||| ||| || | ||||| ||| ||||||| ||||||| ||||||||||  |||||||||    
T  33693278 aaaatcgtgttaacttggaggtaaactcgatttctggtaaaatcagaaggtttgacgagtttgaccgagttaacactcggtaaact 33693363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 64 - 149
Target Start/End: Original strand, 49458358 - 49458443
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    ||||||||||| ||||||| | ||||| |||||||||| || ||||| ||| ||| || | ||||||||| ||||||| |||||||    
T  49458358 cgagtttacgtgtttaggtatcaaaattgtgttaactctgaagtaaactcgatttctggtaaaatcggaaggtttgacgagtttga 49458443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 37 - 146
Target Start/End: Complemental strand, 53645441 - 53645332
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |   ||||| |||||||||||||  |||| ||| | ||||| || ||||| ||  |||||| ||||||||||| ||    
T  53645441 aatcgagtgttaactcgtaaactcgtctgagttaacgtttttaggtggcaaaaacgtataaactcagaggtaaactcagtttttggtgaaatcggaaagt 53645342  T
Q  137 ttgacaagtt 146  Q
    ||||| ||||    
T  53645341 ttgacgagtt 53645332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 171
Target Start/End: Original strand, 26107775 - 26107883
Alignment:
Q  63 acgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatg 162  Q
    ||||||||||||||||||||   |||||| ||||||||| || ||||| ||| ||| || |  |||||||| |||| || |||||||  |||||||||      
T  26107775 acgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcgatttctggtacaatcggaaggtttaacgagtttgactgagttaacact 26107874  T
Q  163 cggtaaact 171  Q
    |||||||||    
T  26107875 cggtaaact 26107883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 37455294 - 37455390
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||| ||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  37455294 cgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 37455390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 172
Target Start/End: Complemental strand, 51737440 - 51737332
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||| ||| ||| |  | ||||||||| |||| || |||||||  |||||||||  |    
T  51737440 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctagtaaaatcggaaggtttaacgagtttgactgagttaacactc 51737341  T
Q  164 ggtaaactg 172  Q
    |||||||||    
T  51737340 ggtaaactg 51737332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 31646014 - 31645907
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||| ||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| |  |||||||  |||||||||  |    
T  31646014 cgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaaagagtttgactgagttaacactc 31645915  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  31645914 ggtaaact 31645907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 68 - 171
Target Start/End: Original strand, 40897582 - 40897685
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggta 167  Q
    |||||| ||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |||||    
T  40897582 tttacgattttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctgataaaattggaaggtttaacgagtttgactgagttaacactcggta 40897681  T
Q  168 aact 171  Q
    ||||    
T  40897682 aact 40897685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 48379597 - 48379704
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||||||||||| || || ||||| ||| ||| || | ||||||||| | || || |||||||  |||||||||  |    
T  48379597 cgagtttacgtttttaggtacaaaaatcgtgttaattctgaggtaaactcgatttctggtaaaatcggaaggcttaacgagtttgactgagttaacactc 48379696  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  48379697 ggtaaact 48379704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 50903062 - 50902955
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||| ||   |||||||||||||||| || ||||| ||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  50903062 cgagtttacgtttttatgtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 50902963  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  50902962 ggtaaact 50902955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 52810805 - 52810912
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   ||||| |||||||||| || ||||| |||  || || | ||||||||| |||| || |||||||  |||||||||  |    
T  52810805 cgagtttacgtttttaggtacaaaaattgtgttaactctgaggtaaactcgggttctggtaaaatcggaaggtttaacgagtttgactgagttaacactc 52810904  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  52810905 ggtaaact 52810912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 64 - 150
Target Start/End: Original strand, 17946675 - 17946761
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgag 150  Q
    |||||||||||||||||||   |||||| ||||||||| || ||||| ||| ||| || | ||||||||| |||| || ||||||||    
T  17946675 cgagtttacgtttttaggtacaaaaatcatgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgag 17946761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 178
Target Start/End: Complemental strand, 47467484 - 47467398
Alignment:
Q  92 gtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    ||||||||||| | ||||| ||| |||||| |||||||| ||  |||||| ||||||| |||||||||| | | |||||| ||||||    
T  47467484 gtgttaactcgaaggtaaactcggtttttggtgaaatcgaaaattttgacgagtttgaccgagttaacacgtgttaaacttggtaaa 47467398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 52617721 - 52617640
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttga 149  Q
    |||||||||||||||   |||||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||    
T  52617721 tttacgtttttaggtacaaaaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttga 52617640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 56; Significance: 4e-23; HSPs: 22)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 37 - 148
Target Start/End: Complemental strand, 1528032 - 1527921
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||| |||||||||||  | | |||||||||||| |||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||||||    
T  1528032 aatcgagtgttaaatcgtaaatttgtccaattttacgtttttaagtggcaaaaacgtgttaactcggaggtaaactcgatttttggtgaaatcggaatgt 1527933  T
Q  137 ttgacaagtttg 148  Q
    | ||||||||||    
T  1527932 tggacaagtttg 1527921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 41252137 - 41252260
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    |||||||||||| || ||||||| |  ||||||||| ||||||||||  |||| |||||||||||||| ||||| ||| |||||| ||||||||||| ||    
T  41252137 aatcgagtgttagcttgtaaattcgttcgagtttacttttttaggtggcaaaaacgtgttaactcggaagtaaactcgatttttgatgaaatcggaaagt 41252236  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||| | ||||| ||||    
T  41252237 ttgacgagtttaaccgagtcaaca 41252260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 19484215 - 19484311
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||| || |||||||| ||||| |||||||||||||| ||||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||    
T  19484215 cgagtttatgtgtttaggtgctaaaaacgtgttaactcggaggtaaactcgatttctggtaaaatcggaaagtttgacgagtttgaccgagttaaca 19484311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 37 - 160
Target Start/End: Complemental strand, 28317199 - 28317076
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||| ||||||| | |  ||| ||||||||||||||||  ||||  |||  |||||||| ||||| ||| |||||| |||||||| || ||    
T  28317199 aatcgagtgttaattcgtaaactcgtccgaatttacgtttttaggtggcaaaaaggtgaaaactcggaggtaaactcgatttttggtgaaatcgaaaagt 28317100  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||||| ||||||||||    
T  28317099 ttgacgagtttgaccgagttaaca 28317076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 42305356 - 42305249
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| ||||||||| | |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || || ||||  |||||||||| |    
T  42305356 cgagtttacctttttaggtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagattgactgagttaacattc 42305257  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  42305256 ggtaaact 42305249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 43308260 - 43308153
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||| |||||||||||   |||||||||||||||| ||| |||||||| ||| || | |||| |||| |||| ||||||||||  |||||||||  |    
T  43308260 cgagtttgcgtttttaggtaccaaaatcgtgttaactctgatataaaatcggtttctggtaaaattggaaggtttaacaagtttgactgagttaacactc 43308161  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  43308160 ggtaaact 43308153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 64 - 169
Target Start/End: Complemental strand, 8029941 - 8029836
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||||| |||||||   |||||||||||||||| ||  |||| ||| ||| || | ||||||||| ||||||| ||||||| ||||||||||  |    
T  8029941 cgagtttacgtgtttaggtaccaaaatcgtgttaactctgagataaactcgatttctggtaaaatcggaaggtttgacgagtttgaccgagttaacactc 8029842  T
Q  164 ggtaaa 169  Q
    ||||||    
T  8029841 ggtaaa 8029836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 9288246 - 9288150
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  9288246 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 9288150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 6388222 - 6388131
Alignment:
Q  68 tttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaac 159  Q
    |||| ||||||||||   ||||||||||||||||||| ||||| ||  ||| || | ||||||||| ||||||||||||||| | |||||||    
T  6388222 tttatgtttttaggtaccaaaatcgtgttaactcggaggtaaactctgtttatggtaaaatcggaaagtttgacaagtttgaccaagttaac 6388131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 10295091 - 10294984
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   | |||||||||||||| || ||||| ||| ||| || | ||||||||| |||| || |||||||  |||||||||  |    
T  10295091 cgagtttacgtttttaggtacaacaatcgtgttaactctgaggtaaactcggtttctggtaaaatcggaaggtttaacgagtttgactgagttaacactc 10294992  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  10294991 ggtaaact 10294984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 27878713 - 27878639
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||||||||||||||| ||| ||| || | ||||||| | ||||||| |||||||  |||||||||    
T  27878713 aaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcggtaggtttgacgagtttgatagagttaaca 27878639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 28018894 - 28018820
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||||||||||||||| ||| ||| || | ||||||| | ||||||| |||||||  |||||||||    
T  28018894 aaaatcgtgttaactcggatgtaaattcggtttctggtaaaatcggtaggtttgacgagtttgatagagttaaca 28018820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 41 - 178
Target Start/End: Complemental strand, 33177971 - 33177834
Alignment:
Q  41 gagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttga 140  Q
    ||||||||||||||||| | | |||| |||| ||||||||||   ||||  ||||||| | | | ||||| ||| |||||| |||||| | |||||||||    
T  33177971 gagtgttaactcgtaaactcgcacgattttatgtttttaggtaccaaaaatgtgttaatttgaaggtaaactcgatttttggtgaaattgaaatgtttga 33177872  T
Q  141 caagtttgagcgagttaacatgcggtaaactgggtaaa 178  Q
    | |||||||  ||||||||| | | |||||| ||||||    
T  33177871 cgagtttgactgagttaacacgtgttaaactcggtaaa 33177834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 171
Target Start/End: Original strand, 41393958 - 41394063
Alignment:
Q  66 agtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgcgg 165  Q
    ||||||||||||||||| | ||||||||||||| ||||| ||||| ||  ||| || | |||||| || ||||||||| ||||| ||  ||||||  |||    
T  41393958 agtttacgtttttaggtatcaaaatcgtgttaattcggaggtaaactcagtttctgataaaatcgaaaggtttgacaaatttgatcgtattaacactcgg 41394057  T
Q  166 taaact 171  Q
    ||||||    
T  41394058 taaact 41394063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 14781884 - 14781788
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||| || ||||||||| | |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||    
T  14781884 cgagttgacatttttaggtataaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaaca 14781788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 18305728 - 18305621
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||| ||||||||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| |  |||||||  |||||||||  |    
T  18305728 cgagcttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaaagagtttgactgagttaacactc 18305629  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  18305628 ggtaaact 18305621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 18958479 - 18958372
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||| | ||| || | |||| |||| |||| ||||| ||||  |||||||||  |    
T  18958479 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaattggtttctggtaaaattggaaggtttaacaagattgactgagttaacactc 18958380  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  18958379 ggtaaact 18958372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 19717626 - 19717519
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || || ||||  |||||||||  |    
T  19717626 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagattgactgagttaacactc 19717527  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  19717526 ggtaaact 19717519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 43166428 - 43166321
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||||||||||||||||||   |||||||||||||||| || |||||||   ||| || | |||| | || ||||||| |||||||  |||||||||  |    
T  43166428 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaataagtttctggtaaaattgaaaggtttgacgagtttgactgagttaacactc 43166329  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  43166328 ggtaaact 43166321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 64 - 171
Target Start/End: Complemental strand, 44725543 - 44725436
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    |||| |||| |||||||||   |||||||||||||||| || ||||||||| ||| || | |||| |||| |||| || |||||||  |||||||||  |    
T  44725543 cgagattacatttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttctggtaaaattggaaggtttaacgagtttgactgagttaacactc 44725444  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  44725443 ggtaaact 44725436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 27915657 - 27915583
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||| ||| |||| ||| ||| || | ||||||| | ||||||| ||||||| ||||||||||    
T  27915657 aaaatcgtgttaactcagatttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaaca 27915583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 160
Target Start/End: Complemental strand, 27962076 - 27962002
Alignment:
Q  86 aaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||| ||| |||| ||| ||| || | ||||||| | ||||||| ||||||| ||||||||||    
T  27962076 aaaatcgtgttaactcagatttaaattcgatttctgataaaatcggtaggtttgacgagtttgaccgagttaaca 27962002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: scaffold0246
Description:

Target: scaffold0246; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 37 - 160
Target Start/End: Original strand, 1340 - 1463
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgt 136  Q
    ||||||||||||||||||||| | |  ||||||||||||||||||||  |||| | |||||||| ||| ||||| ||| |||||  ||||||||||| ||    
T  1340 aatcgagtgttaactcgtaaactcgaccgagtttacgtttttaggtggcaaaaacatgttaacttggaggtaaactcggtttttagtgaaatcggaaagt 1439  T
Q  137 ttgacaagtttgagcgagttaaca 160  Q
    ||||| ||||| | ||||||||||    
T  1440 ttgacgagtttaaccgagttaaca 1463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0246; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 65 - 121
Target Start/End: Complemental strand, 25700 - 25644
Alignment:
Q  65 gagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||||||||  |||| |||||||||||||| ||||| ||| ||||||    
T  25700 gagtttacgtttttaggtggcaaaaacgtgttaactcggaggtaaactcggtttttg 25644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0457 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0457
Description:

Target: scaffold0457; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 6241 - 6141
Alignment:
Q  62 gacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcg--ttttttgttgaaatcggaatgtttgacaagtttgagcgagttaac 159  Q
    |||||||||||||| |||||||| ||||||||||||||||| | ||||| | |  ||||||||||||||| ||||||||||  | |||||| ||||||||    
T  6241 gacgagtttacgttcttaggtgtcaaaatcgtgttaactcgaaagtaaagttgttttttttgttgaaatcagaatgtttgaggaatttgagagagttaac 6142  T
Q  160 a 160  Q
    |    
T  6141 a 6141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1128 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold1128
Description:

Target: scaffold1128; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 64 - 160
Target Start/End: Complemental strand, 1005 - 909
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||| |||||||   ||||||||||||||||||| ||||| ||| ||| || | ||||||||| ||||||  ||||||| ||||||||||    
T  1005 cgagtttacgtgtttaggtaccaaaatcgtgttaactcggaggtaaactcggtttctggtaaaatcggaaagtttgatgagtttgaccgagttaaca 909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0421 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 92 - 160
Target Start/End: Original strand, 1727 - 1795
Alignment:
Q  92 gtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    ||||||||||||| ||||| ||| |||||| ||||||||||| ||||||| ||||||| ||||||||||    
T  1727 gtgttaactcggaggtaaactcgatttttggtgaaatcggaaagtttgacgagtttgaccgagttaaca 1795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0433 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0433
Description:

Target: scaffold0433; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 121
Target Start/End: Original strand, 363 - 447
Alignment:
Q  37 aatcgagtgttaactcgtaaatttggacgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttg 121  Q
    |||||||||||||| |||||| | |  |||||||||||||||| |||  |||| |||||||||||||| ||||| ||| ||||||    
T  363 aatcgagtgttaacacgtaaactcgttcgagtttacgtttttatgtggcaaaaacgtgttaactcggaggtaaactcggtttttg 447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0543 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0543
Description:

Target: scaffold0543; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 64 - 171
Target Start/End: Original strand, 10973 - 11080
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaacatgc 163  Q
    ||||||||| |||||||||   |||||||||||||||| || ||||| ||| |||||| | |||| |||| |||| || |||||||  |||||||||  |    
T  10973 cgagtttacatttttaggtacaaaaatcgtgttaactctgaggtaaattcgatttttggtaaaattggaaggtttaacgagtttgactgagttaacactc 11072  T
Q  164 ggtaaact 171  Q
    ||||||||    
T  11073 ggtaaact 11080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1504 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1504
Description:

Target: scaffold1504; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 1315 - 1411
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
    |||||||||||||||||||   |||||||||||||||| || ||||||||| ||| |  | |||| |||| |||| || |||||||  |||||||||    
T  1315 cgagtttacgtttttaggtacaaaaatcgtgttaactctgaggtaaaatcggtttcttgtaaaattggaaggtttaacgagtttgactgagttaaca 1411  T

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Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 64 - 160
Target Start/End: Original strand, 89280 - 89376
Alignment:
Q  64 cgagtttacgtttttaggtgttaaaatcgtgttaactcggatgtaaaatcgttttttgttgaaatcggaatgtttgacaagtttgagcgagttaaca 160  Q
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T  89280 cgagtttaagtttttaggtaccaatatcgtgttaacttgaaggtaaactcgatttctggtaaaattggaaggtttgacgagtttgatcgagttaaca 89376  T

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