View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6664_low_7 (Length: 349)
Name: NF6664_low_7
Description: NF6664
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6664_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 333
Target Start/End: Complemental strand, 44975566 - 44975234
Alignment:
| Q |
1 |
ccatctctgtccctcatggagccctctcttccgcaacacgtcaccaccagtgatcatgcattcttgatcattctcttgaaaccatatcatgcacctcgta |
100 |
Q |
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| T |
44975566 |
ccatctctgtccctcatggagccctctcttctgcaacacgtcaccaccagtgatcatgcattcttgatcattctcttgaaaccatatcatgcaccttgta |
44975467 |
T |
|
| Q |
101 |
gctaagcaagaatactcattgataagaagtgcatcaagagcatatttgtacatagaaaagaagtgcatgaagagccaatacttaggtaaacaatccttag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44975466 |
gctaagcaagaatactcattgataagaagtgcatcaagagcatatttgtacatagaaaagaagtgcatgaagagccaatacttaggtaaacaatccttag |
44975367 |
T |
|
| Q |
201 |
atataaagtatccagagaacagaaaaaatgctgcaagtagcactgtcatgagtgaagttccggcaatgtagtttggtgctaaagaactcaagaacagaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
44975366 |
atataaagtatccagagaacagaaaaaatgctgcaagtagcactgtcatgagtgaagttccagcaatgtagtttggtgctaaagaactcaagaacagaac |
44975267 |
T |
|
| Q |
301 |
aaatgagtttgccataagaactatgacccaaat |
333 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
44975266 |
aaatgagtttgccataagaactatgacccaaat |
44975234 |
T |
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