View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_28 (Length: 272)
Name: NF6665_high_28
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_28 |
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Alignment Details
Target: chr5 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 262
Target Start/End: Complemental strand, 27932611 - 27932350
Alignment:
| Q |
1 |
gttaattaaataaagtaatcaacgcaaatcttgttcaatttgagtagaatctatctccacattaaattcaaatcaattcttttaatgattccaaacacag |
100 |
Q |
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| T |
27932611 |
gttaattaaataaagtaatcaacacaaatcttgttcaatttgagtagaatctatctccacattaaattcaaatcaattcttttaatgattccaaacacag |
27932512 |
T |
|
| Q |
101 |
ttctagggtttcattctaactctcgattcaaatcttaaatgggaaaaaagtagcatattcatataataaataacttcaaatagtagcaaaaactttttgg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27932511 |
ttctagggtttcattctaactctcgattcaaatcttaaatgggaaaaaagtagcatattcatataataaataacttcaaatagtagcaaaaactttttga |
27932412 |
T |
|
| Q |
201 |
tgtctcaattagggtttttaaaaaatccacattcacaactttggcctcgactctgtcctatg |
262 |
Q |
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||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
27932411 |
tgtcttaattagggtttttaaaaaatccacattcacaattttggcctcgactctgtcctatg |
27932350 |
T |
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