View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_high_29 (Length: 262)

Name: NF6665_high_29
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_high_29
NF6665_high_29
[»] chr5 (24 HSPs)
chr5 (61-246)||(38334382-38334567)
chr5 (61-230)||(666899-667068)
chr5 (61-230)||(27885714-27885883)
chr5 (61-237)||(11917721-11917897)
chr5 (61-238)||(8409251-8409428)
chr5 (65-238)||(701482-701655)
chr5 (61-238)||(15068741-15068918)
chr5 (61-238)||(30002263-30002440)
chr5 (62-147)||(2226451-2226536)
chr5 (55-154)||(332842-332941)
chr5 (62-149)||(12680643-12680730)
chr5 (62-151)||(10174481-10174569)
chr5 (66-154)||(9161403-9161491)
chr5 (62-154)||(12165511-12165603)
chr5 (66-154)||(36103183-36103271)
chr5 (65-154)||(38434108-38434197)
chr5 (62-154)||(36176457-36176549)
chr5 (62-154)||(36176688-36176780)
chr5 (62-140)||(32520793-32520871)
chr5 (66-136)||(42545822-42545892)
chr5 (94-154)||(30265393-30265453)
chr5 (66-154)||(23781134-23781215)
chr5 (66-154)||(23868087-23868168)
chr5 (62-149)||(23623469-23623556)
[»] chr3 (15 HSPs)
chr3 (61-237)||(35401801-35401977)
chr3 (62-237)||(10369527-10369702)
chr3 (61-238)||(4669224-4669401)
chr3 (56-217)||(34794860-34795021)
chr3 (61-223)||(51149299-51149461)
chr3 (61-223)||(33361243-33361405)
chr3 (62-164)||(6003961-6004063)
chr3 (62-149)||(48032709-48032796)
chr3 (55-140)||(32880738-32880823)
chr3 (94-143)||(43030846-43030895)
chr3 (68-140)||(35531736-35531808)
chr3 (55-119)||(50562152-50562216)
chr3 (94-154)||(21586447-21586506)
chr3 (66-140)||(27641794-27641868)
chr3 (55-130)||(39098370-39098440)
[»] chr2 (13 HSPs)
chr2 (61-230)||(36412928-36413097)
chr2 (61-246)||(20420679-20420870)
chr2 (61-223)||(9811670-9811832)
chr2 (61-223)||(16578925-16579082)
chr2 (55-154)||(44035732-44035831)
chr2 (55-146)||(42785091-42785182)
chr2 (62-164)||(44979343-44979445)
chr2 (62-154)||(25297824-25297916)
chr2 (66-140)||(11376318-11376392)
chr2 (62-160)||(18360217-18360315)
chr2 (86-154)||(17916450-17916518)
chr2 (78-140)||(19936709-19936771)
chr2 (79-149)||(44085956-44086026)
[»] chr7 (25 HSPs)
chr7 (55-223)||(47204082-47204250)
chr7 (61-223)||(47069958-47070120)
chr7 (61-223)||(10672109-10672271)
chr7 (61-238)||(12117875-12118052)
chr7 (61-230)||(8768297-8768461)
chr7 (61-223)||(11206009-11206161)
chr7 (61-177)||(3211773-3211889)
chr7 (62-154)||(43429591-43429683)
chr7 (62-140)||(42910249-42910327)
chr7 (62-160)||(18672788-18672886)
chr7 (62-154)||(13852729-13852821)
chr7 (62-154)||(47903642-47903734)
chr7 (62-135)||(32824028-32824101)
chr7 (66-154)||(27054300-27054388)
chr7 (62-154)||(31876214-31876301)
chr7 (66-143)||(5933047-5933129)
chr7 (62-140)||(36921124-36921202)
chr7 (62-154)||(24360863-24360953)
chr7 (62-135)||(10069995-10070068)
chr7 (62-135)||(22366882-22366955)
chr7 (62-149)||(40849325-40849412)
chr7 (66-135)||(31982243-31982312)
chr7 (90-149)||(524425-524484)
chr7 (67-135)||(36509078-36509142)
chr7 (95-149)||(30079153-30079207)
[»] chr1 (17 HSPs)
chr1 (55-223)||(8211570-8211738)
chr1 (55-223)||(5154958-5155126)
chr1 (55-238)||(20494014-20494193)
chr1 (61-217)||(29707713-29707864)
chr1 (65-154)||(33910347-33910436)
chr1 (65-154)||(39256206-39256295)
chr1 (55-154)||(33474864-33474963)
chr1 (57-135)||(29390121-29390199)
chr1 (55-141)||(32954510-32954596)
chr1 (65-140)||(45692228-45692303)
chr1 (66-154)||(1160605-1160692)
chr1 (62-146)||(24910621-24910705)
chr1 (62-154)||(16529059-16529151)
chr1 (62-132)||(51251998-51252068)
chr1 (88-140)||(6722416-6722468)
chr1 (102-154)||(11899462-11899514)
chr1 (62-123)||(44918980-44919041)
[»] chr6 (10 HSPs)
chr6 (61-223)||(12270836-12270998)
chr6 (61-246)||(5866649-5866830)
chr6 (67-154)||(10390613-10390700)
chr6 (58-154)||(33550746-33550842)
chr6 (62-164)||(35039506-35039608)
chr6 (55-154)||(15860150-15860249)
chr6 (55-154)||(10591261-10591360)
chr6 (95-154)||(13801578-13801637)
chr6 (62-154)||(25137567-25137658)
chr6 (67-154)||(10493964-10494051)
[»] chr4 (23 HSPs)
chr4 (61-223)||(50570589-50570751)
chr4 (61-246)||(29643338-29643523)
chr4 (61-223)||(42558013-42558175)
chr4 (61-175)||(29639973-29640087)
chr4 (61-156)||(36078681-36078776)
chr4 (62-164)||(40899652-40899754)
chr4 (68-154)||(52345130-52345216)
chr4 (66-154)||(5261427-5261515)
chr4 (62-154)||(48996502-48996594)
chr4 (55-144)||(6333754-6333843)
chr4 (62-142)||(26477761-26477841)
chr4 (62-154)||(30193548-30193640)
chr4 (55-135)||(52345283-52345363)
chr4 (66-145)||(32137124-32137203)
chr4 (63-119)||(10219131-10219187)
chr4 (58-154)||(40806389-40806480)
chr4 (78-154)||(51395253-51395329)
chr4 (67-135)||(8176185-8176253)
chr4 (90-135)||(31301832-31301877)
chr4 (202-242)||(29639932-29639972)
chr4 (103-154)||(43630956-43631007)
chr4 (102-154)||(23937130-23937182)
chr4 (121-149)||(48653492-48653520)
[»] scaffold0308 (1 HSPs)
scaffold0308 (61-237)||(5484-5660)
[»] chr8 (13 HSPs)
chr8 (61-230)||(5802523-5802689)
chr8 (61-217)||(3006204-3006360)
chr8 (62-154)||(44673147-44673239)
chr8 (62-140)||(14549660-14549738)
chr8 (62-154)||(30392502-30392594)
chr8 (63-140)||(3682350-3682427)
chr8 (62-154)||(36827360-36827452)
chr8 (55-149)||(10661576-10661669)
chr8 (62-154)||(6200504-6200596)
chr8 (80-140)||(36909934-36909994)
chr8 (62-139)||(18169599-18169676)
chr8 (62-139)||(18633165-18633242)
chr8 (102-160)||(33069009-33069067)
[»] scaffold0059 (2 HSPs)
scaffold0059 (62-154)||(69103-69195)
scaffold0059 (62-154)||(77209-77301)
[»] scaffold0013 (1 HSPs)
scaffold0013 (62-154)||(106458-106550)
[»] scaffold0029 (2 HSPs)
scaffold0029 (62-154)||(40142-40234)
scaffold0029 (62-154)||(47338-47430)


Alignment Details
Target: chr5 (Bit Score: 170; Significance: 3e-91; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 38334382 - 38334567
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  38334382 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaactaaaccaaaccgcaaaaatactcaat 38334481  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 246  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  38334482 gttattaaactaagtaattactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctattcatttcat 38334567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 666899 - 667068
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  666899 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 666998  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  666999 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 667068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 27885714 - 27885883
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  27885714 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 27885813  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27885814 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 27885883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 61 - 237
Target Start/End: Complemental strand, 11917897 - 11917721
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  11917897 gttcggatgacttttagactaaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 11917798  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  11917797 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 11917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 8409428 - 8409251
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8409428 gttcggatgacttttagactgaatcgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 8409329  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||    
T  8409328 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagtccaacactatccagctatt 8409251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 65 - 238
Target Start/End: Complemental strand, 701655 - 701482
Alignment:
Q  65 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatgtta 164  Q
    |||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  701655 ggatgacttttagactaaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaatgtta 701556  T
Q  165 ttaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  701555 ttaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctatt 701482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 15068918 - 15068741
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  15068918 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaaaaatactcaat 15068819  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  15068818 gttattaaactaagtaagtactgtactagcccaataccaaagtgagcccaagcccaagcccaacactatccagctatt 15068741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 30002440 - 30002263
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||    
T  30002440 gttcggatgatttttagactgaaccgcgcggttcggttcggtttgcggtttacatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 30002341  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||    
T  30002340 gttattaaactaagtaagtattgtactagcccaataccaaagtgaacccaagtccaagcccaacactatccagctatt 30002263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 62 - 147
Target Start/End: Original strand, 2226451 - 2226536
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgc 147  Q
    ||||||||||||||  ||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  2226451 ttcggatgacttttgcacttaaccgcgcggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgc 2226536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 154
Target Start/End: Original strand, 332842 - 332941
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||| |||||||  |||||||||||| |||||||| |||||||||||||||||||||||  ||||||||||||||| ||||||||| ||||    
T  332842 cacttggttcggacgacttttgcactgaaccgcgcagttcggtttggtttgcggtttgcatctcagcatccgaaccaaaccaaactaaaccgcaagaata 332941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 12680643 - 12680730
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    ||||||||||||||  | |||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  12680643 ttcggatgacttttgcaatgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaa 12680730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 10174569 - 10174481
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaa 151  Q
    ||||||||||||||  |||||||||||||||| | |||| |||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10174569 ttcggatgacttttgcactgaaccgcgcggtttg-ttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaa 10174481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 9161491 - 9161403
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  ||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||| ||||    
T  9161491 gatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgaatctcagcaaccgaaccaaaccaaacccaaccgcaagaata 9161403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 12165511 - 12165603
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||||||||||  ||||||||||||||||| ||||||||||||||||  ||||||||| |||||||||||||| ||||    
T  12165511 ttcggatgacttttgcactgaaccgcatggttcggttcggtttgcagtttgcatctcagcaactgaaccaaacgaaaccaaaccgcaagaata 12165603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 36103183 - 36103271
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  |||||||||||||||||| || ||||||  |||||||||||||||| ||||||||||||||||||||||||| ||||    
T  36103183 gatgacttttgcactgaaccgcgcggttcgttttggtttgtagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 36103271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 65 - 154
Target Start/End: Complemental strand, 38434197 - 38434108
Alignment:
Q  65 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||  ||||||||| | ||||||||| | ||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  38434197 ggatgacttttgcactgaaccgtgaggttcggtttgatttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 38434108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 36176457 - 36176549
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||| ||||||  ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  36176457 ttcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaata 36176549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 36176688 - 36176780
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||| ||||||  ||||||| | |||||||||||||||||||||||| ||||||||| ||||||||||||||| ||||    
T  36176688 ttcggatgacttttgcactaaaccgcatggttcgggttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaaccgcaagaata 36176780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 32520793 - 32520871
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||| | ||||||||||||| ||||||||||||||||    
T  32520793 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcgatctgcatctcagcaaccgaaccaaaccaaacc 32520871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 66 - 136
Target Start/End: Complemental strand, 42545892 - 42545822
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacca 136  Q
    ||||||||||  ||| |||||||||||||||||||||||||||||||||||||| ||| ||||||||||||    
T  42545892 gatgacttttgcactaaaccgcgcggttcggttcggtttgcggtttgcatctcaacaaccgaaccaaacca 42545822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 30265393 - 30265453
Alignment:
Q  94 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| ||||    
T  30265393 cggttcggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaatcgcaagaata 30265453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 23781215 - 23781134
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  ||||||| |||||||||||||||||||||       ||||||||||  ||||||| |||||||||||||||||||||    
T  23781215 gatgacttttgcactgaactgcgcggttcggttcggtttgc-------atctcagcaactgaaccaagccaaaccaaaccgcaaaaata 23781134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 66 - 154
Target Start/End: Complemental strand, 23868168 - 23868087
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  ||||||| |||||||||||||||||||||       ||||||||||  ||||||| |||||||||||||||||||||    
T  23868168 gatgacttttgcactgaactgcgcggttcggttcggtttgc-------atctcagcaactgaaccaagccaaaccaaaccgcaaaaata 23868087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 23623556 - 23623469
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    ||||||| ||||||  ||| ||||||  |||| |||| |||||||||||| ||| | |  || |||||||||||||||||||||||||    
T  23623556 ttcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcatttgacaaaccgaaccaaaccaaaccaaaccgcaa 23623469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 35401801 - 35401977
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35401801 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 35401900  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 237  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  35401901 gttattaaactaagtaagtattgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 35401977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 62 - 237
Target Start/End: Complemental strand, 10369702 - 10369527
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10369702 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaatg 10369603  T
Q  162 ttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  10369602 ttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccagctat 10369527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 61 - 238
Target Start/End: Original strand, 4669224 - 4669401
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  4669224 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaatactcaat 4669323  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  4669324 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaaccctatccagctatt 4669401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 56 - 217
Target Start/End: Complemental strand, 34795021 - 34794860
Alignment:
Q  56 acttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatac 155  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  34795021 acttggttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatac 34794922  T
Q  156 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 217  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34794921 tcaatgttattaaactaagtaagtactgtaccagcccaataccaaagtgaacccaagcccaa 34794860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 51149299 - 51149461
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  51149299 gttcggatgacttttagactgaaccgcgcggttcggttcggtttacggtttgcatctcagcaacctaaccaaaccaaaccaaaccgcaaaaatactcaat 51149398  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  51149399 gttattaaactaagtaagtactctactagcccaataccaaagtgaacccaagcccaagcccaa 51149461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 33361405 - 33361243
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||||||||||  |||| ||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||    
T  33361405 gttcggatgacttttagactgaaccgcgcggtttagttcagtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaaaaatactcaat 33361306  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33361305 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 33361243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 6003961 - 6004063
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 161  Q
    ||||||||||||||  ||||||||||| |||| ||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||    
T  6003961 ttcggatgacttttgcactgaaccgcgaggtttggttcggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 6004060  T
Q  162 tta 164  Q
    |||    
T  6004061 tta 6004063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 48032709 - 48032796
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||  |||||||||||||||||||||||||    
T  48032709 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaa 48032796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 32880823 - 32880738
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    |||||||||||||||||||||  |||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||||||    
T  32880823 cacttggttcggatgacttttgcactgaaccgcgcagttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaacc 32880738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 94 - 143
Target Start/End: Complemental strand, 43030895 - 43030846
Alignment:
Q  94 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 143  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  43030895 cggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaa 43030846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 68 - 140
Target Start/End: Original strand, 35531736 - 35531808
Alignment:
Q  68 tgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||  |||||||||| |||||| ||||| ||||| |||||||||||||||| ||||||||||||||||    
T  35531736 tgacttttgcactgaaccgcacggttcagttcgatttgcagtttgcatctcagcaaccgaaccaaaccaaacc 35531808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 50562152 - 50562216
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctca 119  Q
    |||||||||||||||||||||| |||||| || ||| ||||||||| |||||| |||||||||||    
T  50562152 cacttggttcggatgacttttacactgaatcgtgcgattcggttcgatttgcgatttgcatctca 50562216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 21586447 - 21586506
Alignment:
Q  94 cggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||| ||||| ||||    
T  21586447 cggttcggtttgcagtttgcatctcagcaaccgaaccaaacc-aaccaaatcgcaagaata 21586506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 66 - 140
Target Start/End: Original strand, 27641794 - 27641868
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||||  ||||||||||| |||| | || |||||||||||||||||||||| |   ||||||||||||||    
T  27641794 gatgacttttgcactgaaccgcgtggtttgatttggtttgcggtttgcatctcagccactaaaccaaaccaaacc 27641868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 55 - 130
Target Start/End: Complemental strand, 39098440 - 39098370
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaacc 130  Q
    |||||||||||||||||||||  ||||||||     || ||||||| |||| ||||||||||||||||| ||||||    
T  39098440 cacttggttcggatgacttttgcactgaacc-----gtgcggttcgatttgtggtttgcatctcagcaaccgaacc 39098370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 166; Significance: 6e-89; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 36412928 - 36413097
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36412928 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 36413027  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36413028 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 36413097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 61 - 246
Target Start/End: Complemental strand, 20420870 - 20420679
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20420870 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 20420771  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagc------ccaacactatcgagctattcatttcat 246  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      ||||||||||| |||||||||||||||    
T  20420770 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaagcccaacactatccagctattcatttcat 20420679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 9811832 - 9811670
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  9811832 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 9811733  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9811732 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 9811670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 16579082 - 16578925
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||     ||||||||||||||    
T  16579082 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaactgaaccaaaccaaacca-----caaaaatactcaat 16578988  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16578987 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 16578925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 44035831 - 44035732
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||||||||||||  ||||||||||||||||||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||||    
T  44035831 cacttggttcggatgacttttgcactgaaccgcgcggttcggtttggtttacggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 44035732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 146
Target Start/End: Original strand, 42785091 - 42785182
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccg 146  Q
    |||||||||||||||||||||  | |||||| |||||||||||| ||||||||||||||||||||| || ||||||||||||||||||||||    
T  42785091 cacttggttcggatgacttttgcattgaaccacgcggttcggtttggtttgcggtttgcatctcagaaaccgaaccaaaccaaaccaaaccg 42785182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 44979343 - 44979445
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 161  Q
    ||||||||| ||||  |||||||||||||||| | || |||||||||||||||||||||| | ||||||||||||||||||||||||| |||| | ||||    
T  44979343 ttcggatgaattttgcactgaaccgcgcggtttgatttggtttgcggtttgcatctcagctaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 44979442  T
Q  162 tta 164  Q
    |||    
T  44979443 tta 44979445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 25297824 - 25297916
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||    |||||||| |||||||||| |||||| ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  25297824 ttcggatgacttttgctttgaaccgcacggttcggtttggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 25297916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 66 - 140
Target Start/End: Complemental strand, 11376392 - 11376318
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||||||||    
T  11376392 gatgacttttgcactgaaccgcgcggttcggttcggtttgcagtttgcatctcagcaactgaaccaaaccaaacc 11376318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 62 - 160
Target Start/End: Complemental strand, 18360315 - 18360217
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||| |||||||||  | |||||| |||||||||||| ||||| | |||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  18360315 ttcgaatgacttttgcattgaaccacgcggttcggtttggtttacagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatcaat 18360217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 17916450 - 17916518
Alignment:
Q  86 gcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||||| ||||    
T  17916450 gcgcggttcggtttggtttgtggtttgcatctcagcaaccgagccaaaccaaaccaaaccgcaagaata 17916518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 19936709 - 19936771
Alignment:
Q  78 actgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||| ||||||||||||||||||||| ||||| |||||||||| | ||||||||||||||    
T  19936709 actgaactgcgcggttcggttcggtttgcagtttgtatctcagcaaccaaaccaaaccaaacc 19936771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 79 - 149
Target Start/End: Complemental strand, 44086026 - 44085956
Alignment:
Q  79 ctgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    |||||||||  |||| |||| |||||| ||||| ||| ||| ||| |||||||||||||||||||||||||    
T  44086026 ctgaaccgcatggtttggtttggtttgtggttttcatttcaccaaccgaaccaaaccaaaccaaaccgcaa 44085956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 161; Significance: 6e-86; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 47204082 - 47204250
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  47204082 cacttggttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 47204181  T
Q  155 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47204182 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 47204250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 47070120 - 47069958
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  47070120 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 47070021  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47070020 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 47069958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 10672271 - 10672109
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  10672271 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 10672172  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10672171 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 10672109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 61 - 238
Target Start/End: Complemental strand, 12118052 - 12117875
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | ||||||||||||| ||||||||||||||||||||    
T  12118052 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcgatttgcatctcagcaaccaaaccaaaccaaactaaaccgcaaaaatactcaat 12117953  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||    
T  12117952 gttattaaactaagtaagtactgtactagaccaataccaaagtgaacccaagcccaagcccaacactatccagctatt 12117875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 8768297 - 8768461
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||     |||||||||||||||||||||||||    
T  8768297 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgtggtttgcatctcagcaaccgaacc-----aaaccaaaccgcaaaaatactcaat 8768391  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 230  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8768392 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 8768461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 11206009 - 11206161
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||          ||||||||||||||||||||    
T  11206009 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaacc----------aaaccgcaaaaatactcaat 11206098  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11206099 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 11206161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 61 - 177
Target Start/End: Original strand, 3211773 - 3211889
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3211773 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 3211872  T
Q  161 gttattaaactaagtaa 177  Q
    |||||||||||||||||    
T  3211873 gttattaaactaagtaa 3211889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 43429683 - 43429591
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||| ||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  43429683 ttcggatgacttttgcactaaaccgcatggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 43429591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 42910249 - 42910327
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||||||||  ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42910249 ttcggatgacttttgcactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaacc 42910327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 62 - 160
Target Start/End: Original strand, 18672788 - 18672886
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||| ||||  | || ||||||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||| |||| |||||    
T  18672788 ttcggatgatttttgcattggaccgcgcagttcggttcggtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaataataatcaat 18672886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 13852821 - 13852729
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||||||||| | |||||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||| ||||    
T  13852821 ttcggatgacttttgcactgaaccgagtggttcggttctgtttgcggtttgcatctcagcaactgaaccaaaccaaaccaaactgcaagaata 13852729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 47903734 - 47903642
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  |||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||| ||||    
T  47903734 ttcggatgacttttgcactgaaccgcgcagttcgtttcggtttgcggtttgcatctcagcaaccgaaccaaaacaacccaaaccacaagaata 47903642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 32824101 - 32824028
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    |||||||| |||||  |||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||    
T  32824101 ttcggatggcttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccaaaccaaacc 32824028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 27054300 - 27054388
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  ||| ||||| ||| || |||| |||||||||||||||| ||||||||||||||||||||||||||||| ||| ||||    
T  27054300 gatgacttttgcactaaaccgtgcgatttggtttggtttgcggtttgcatatcagcaatcgaaccaaaccaaaccaaaccacaagaata 27054388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 31876214 - 31876301
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  | ||||||| |||||||| || ||||||||||||||||||||||     ||||||||||||||||||||||||||||    
T  31876214 ttcggatgacttttgcaatgaaccgtgcggttcgatttggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaata 31876301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 5933129 - 5933047
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttc-----ggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaa 143  Q
    ||||||||||  ||||||||||||||||||||||     ||||||||||||| |||||||||| |||||||||||||||||||    
T  5933129 gatgacttttgcactgaaccgcgcggttcggttcggttcggtttgcggtttgtatctcagcaaccgaaccaaaccaaaccaaa 5933047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 62 - 140
Target Start/End: Original strand, 36921124 - 36921202
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||| ||||||  | |||||| |||||||||||| ||||||| |||||||||||||||| ||||||||||||||||    
T  36921124 ttcggattacttttgcattgaaccacgcggttcggtttggtttgcagtttgcatctcagcaaccgaaccaaaccaaacc 36921202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 24360863 - 24360953
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  || ||||| | | |||||||||||||  |||||||| ||||||||| ||||||||||||||||||||||||| ||||    
T  24360863 ttcggatgacttttgcacagaaccacacagttcggttcggtt--cggtttgcgtctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 24360953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 10070068 - 10069995
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    ||||||||||||||  |||||||||| | |||| |||||||||||| ||||||||||||||| | |||||||||    
T  10070068 ttcggatgacttttgcactgaaccgcacagttcagttcggtttgcgatttgcatctcagcaaccaaaccaaacc 10069995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 135
Target Start/End: Complemental strand, 22366955 - 22366882
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    ||||||||||||||  ||| ||||| ||| || ||||||||||||||||||||||| ||||| | |||||||||    
T  22366955 ttcggatgacttttgcactaaaccgtgcgatttggttcggtttgcggtttgcatcttagcaaccaaaccaaacc 22366882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 62 - 149
Target Start/End: Complemental strand, 40849412 - 40849325
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    ||||||| ||||||  ||| ||||||  |||| |||| |||||||||||| ||| | | ||| |||||||||||||||||||||||||    
T  40849412 ttcggatcacttttttactcaaccgcatggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 40849325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 66 - 135
Target Start/End: Original strand, 31982243 - 31982312
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    ||||||||||  ||||||| |||||||| |||| | |||||||||||||||| ||||| | |||||||||    
T  31982243 gatgacttttgcactgaactgcgcggtttggtttgatttgcggtttgcatcttagcaaccaaaccaaacc 31982312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 90 - 149
Target Start/End: Original strand, 524425 - 524484
Alignment:
Q  90 ggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    |||| |||| |||||||||||| ||| | | ||| |||||||||||||||||||||||||    
T  524425 ggtttggtttggtttgcggttttcattttaccaaccgaaccaaaccaaaccaaaccgcaa 524484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 135
Target Start/End: Complemental strand, 36509142 - 36509078
Alignment:
Q  67 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    |||||||||  | ||||||| ||||||||||| |||||||||||||    |||||||||||||||||||    
T  36509142 atgacttttgcattgaaccgtgcggttcggtttggtttgcggtttg----tcagcaatcgaaccaaacc 36509078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 30079153 - 30079207
Alignment:
Q  95 ggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    |||| |||||||||||| ||  | ||||| |||||||||||||||||||||||||    
T  30079153 ggtttggtttgcggttttcagtttagcaaccgaaccaaaccaaaccaaaccgcaa 30079207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 161; Significance: 6e-86; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 55 - 223
Target Start/End: Complemental strand, 8211738 - 8211570
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  8211738 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 8211639  T
Q  155 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  8211638 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaaacccaa 8211570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 55 - 223
Target Start/End: Original strand, 5154958 - 5155126
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  5154958 cacttggttcggatgacttttagactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 5155057  T
Q  155 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5155058 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaaacccaa 5155126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 55 - 238
Target Start/End: Complemental strand, 20494193 - 20494014
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  20494193 cacttggttcggatgacttttagactgaaccgcgcggttcggttcgatttgctgtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaata 20494094  T
Q  155 ctcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctatt 238  Q
    ||||||||||||||||||||||     || ||||||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  20494093 ctcaatgttattaaactaagtat----tgcactagcccaataccaaagtgaactcaagcccaagcccaacactatccagctatt 20494014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 29707713 - 29707864
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||||      |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29707713 gttcggatgacttttagactgaaccgc-----acggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29707807  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 217  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29707808 gttattaaactaagtaagtaatgtactagcccaataccaaagtgaacccaagcccaa 29707864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 33910347 - 33910436
Alignment:
Q  65 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||  ||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||| ||||    
T  33910347 ggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagtaatcaaaccaaaccaaaccaaaccgcaagaata 33910436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 65 - 154
Target Start/End: Original strand, 39256206 - 39256295
Alignment:
Q  65 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||  ||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  39256206 ggatgacttttgcactgaactgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 39256295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 33474963 - 33474864
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||| |||||||||||||||  |||||||||||||||||||||||||||| | ||||||||||| ||| |||||||||||||||||||| |||| ||||    
T  33474963 cacttagttcggatgacttttgcactgaaccgcgcggttcggttcggtttgtgatttgcatctcatcaaccgaaccaaaccaaaccaaactgcaagaata 33474864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 57 - 135
Target Start/End: Complemental strand, 29390199 - 29390121
Alignment:
Q  57 cttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| || ||||||    
T  29390199 cttggttcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcaacaatcaaatcaaacc 29390121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 55 - 141
Target Start/End: Complemental strand, 32954596 - 32954510
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacca 141  Q
    |||||||||||||||||||||  ||| |||||| |||||| |||||||| ||||||||||||||||||| |||||||||||||||||    
T  32954596 cacttggttcggatgacttttgcactaaaccgcacggttccgttcggttcgcggtttgcatctcagcaaccgaaccaaaccaaacca 32954510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 65 - 140
Target Start/End: Complemental strand, 45692303 - 45692228
Alignment:
Q  65 ggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    |||||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||    
T  45692303 ggatgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaacaaacc 45692228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 1160605 - 1160692
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  |||||||||| || ||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| ||||    
T  1160605 gatgacttttgcactgaaccgcacgattcggttcgatttgcggtt-gcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 1160692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 146
Target Start/End: Original strand, 24910621 - 24910705
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccg 146  Q
    ||||||||||||||  | ||||||| || ||||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||    
T  24910621 ttcggatgacttttgcattgaaccgtgcagttcggttcagtttgtggtttgcatctcagcaaccgaaccaaaccaaaccaaaccg 24910705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 16529059 - 16529151
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||| |||||  ||||||| |||| ||||||||  || |||||||||||||||||||| | ||||||||||||||||||||||| ||||    
T  16529059 ttcggatggcttttgcactgaacagcgcagttcggtttagtatgcggtttgcatctcagcaaccaaaccaaaccaaaccaaaccgcaagaata 16529151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 132
Target Start/End: Original strand, 51251998 - 51252068
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaa 132  Q
    ||||||||||||||  | |||||||||| |||||||| |||||||||||||||||||||||| | ||||||    
T  51251998 ttcggatgacttttgcaatgaaccgcgcagttcggtttggtttgcggtttgcatctcagcaaccaaaccaa 51252068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 88 - 140
Target Start/End: Original strand, 6722416 - 6722468
Alignment:
Q  88 gcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    |||||||| |||| |||||||||||||||||||||| ||||||||||||||||    
T  6722416 gcggttcgattcgatttgcggtttgcatctcagcaaccgaaccaaaccaaacc 6722468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 102 - 154
Target Start/End: Complemental strand, 11899514 - 11899462
Alignment:
Q  102 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||||||||||||| |||| |||||||||||||||||||| ||||    
T  11899514 tttgcggtttgcatctcagcaaccgaatcaaaccaaaccaaaccgcaagaata 11899462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 62 - 123
Target Start/End: Complemental strand, 44919041 - 44918980
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaa 123  Q
    ||||||| ||||||  ||||||| |||||||| |||| ||||||||||||||||||| ||||    
T  44919041 ttcggataacttttgcactgaactgcgcggtttggtttggtttgcggtttgcatctctgcaa 44918980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 159; Significance: 9e-85; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 12270998 - 12270836
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  12270998 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 12270899  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12270898 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 12270836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 5866649 - 5866830
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5866649 gttcggatgtcttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 5866748  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 246  Q
    ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||    
T  5866749 gttattaaac----taagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatccaggtattcatttcat 5866830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 10390613 - 10390700
Alignment:
Q  67 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||  ||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  10390613 atgacttttgcactgaaccgcgcggttcggttcgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 10390700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 58 - 154
Target Start/End: Complemental strand, 33550842 - 33550746
Alignment:
Q  58 ttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||| ||| ||||||  |||||||||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  33550842 ttggttcagattacttttgcactgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccgaaccaaaccaaaccgcaagaata 33550746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 35039506 - 35039608
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 161  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||| ||| | ||||||||||||||||||||||| |||| | ||||    
T  35039506 ttcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcaacaaccaaaccaaaccaaaccaaaccgcaagaataatgaatg 35039605  T
Q  162 tta 164  Q
    |||    
T  35039606 tta 35039608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 15860249 - 15860150
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||||||||||||| ||||||||| |||||||| || ||||||| ||||||| |||| ||| |||||||||||||||||||| |||| ||||    
T  15860249 cacttggttcggatgacttttacactgaaccgtgcggttcgatttggtttgcagtttgcacctcaccaaccgaaccaaaccaaaccaaactgcaagaata 15860150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 154
Target Start/End: Complemental strand, 10591360 - 10591261
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||| |||||||||||||||  |||||||||||||||||| ||||||||||||||||| ||||| |||  ||||||||||||||  |||||||| ||||    
T  10591360 cacttagttcggatgacttttgcactgaaccgcgcggttcgattcggtttgcggtttgcgtctcaacaacagaaccaaaccaaactgaaccgcaagaata 10591261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 95 - 154
Target Start/End: Original strand, 13801578 - 13801637
Alignment:
Q  95 ggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||||||||||||| |||  |||||||||||||||||||||||| ||||    
T  13801578 ggttcggtttgcggtttgcatctcatcaactgaaccaaaccaaaccaaaccgcaagaata 13801637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 25137658 - 25137567
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  |||||||||||||||| |||| || ||||||| ||||||||| ||| ||||||||||  ||||||||| ||| ||||    
T  25137658 ttcggatgacttttgcactgaaccgcgcggtttggtttgg-ttgcggtatgcatctcatcaaccgaaccaaactgaaccaaaccacaataata 25137567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 67 - 154
Target Start/End: Original strand, 10493964 - 10494051
Alignment:
Q  67 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||  ||||||||| |  ||||| |||||||||| ||||||||||||||||   |||||||||||||||||| |||| ||||    
T  10493964 atgacttttgcactgaaccgtgtagttcgattcggtttgcagtttgcatctcagcaactaaaccaaaccaaaccaaactgcaagaata 10494051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 159; Significance: 9e-85; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 61 - 223
Target Start/End: Original strand, 50570589 - 50570751
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  50570589 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 50570688  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50570689 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 50570751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 61 - 246
Target Start/End: Original strand, 29643338 - 29643523
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29643338 gttcggatgacttttaaactgaaccgcgcggttcggttcggtttgtggcttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29643437  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctattcatttcat 246  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  29643438 gttattaaactaagtaagtactgtactagtccaataccaaagtgaacccaagcccaaacccaacactatccagctattcatttcat 29643523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 61 - 223
Target Start/End: Complemental strand, 42558175 - 42558013
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  42558175 gttcggatgacttttagactgaaccgtgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 42558076  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaa 223  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||    
T  42558075 gttattaaactaagtaagtactgtactaacccaataccaaagtgaacccaaacccaagcccaa 42558013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 61 - 175
Target Start/End: Complemental strand, 29640087 - 29639973
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  29640087 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 29639988  T
Q  161 gttattaaactaagt 175  Q
    |||||||||||||||    
T  29639987 gttattaaactaagt 29639973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 36078776 - 36078681
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatact 156  Q
    ||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||    
T  36078776 gttcggatgacttttagactgaaccgcgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatact 36078681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 62 - 164
Target Start/End: Original strand, 40899652 - 40899754
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaatg 161  Q
    ||||||||||||||   ||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| | ||||    
T  40899652 ttcggatgacttttgcgctgaaccgcgcggtttggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaataatgaatg 40899751  T
Q  162 tta 164  Q
    |||    
T  40899752 tta 40899754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 68 - 154
Target Start/End: Complemental strand, 52345216 - 52345130
Alignment:
Q  68 tgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  52345216 tgacttttgcactgaaccgcacggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 52345130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 66 - 154
Target Start/End: Original strand, 5261427 - 5261515
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||  ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| ||||    
T  5261427 gatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagaaatcgaaccaaatcaaaccaaactgcaagaata 5261515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 48996594 - 48996502
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  | ||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  48996594 ttcggatgacttttgcaatgaaccgcgcggttcggtttgatttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 48996502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 55 - 144
Target Start/End: Complemental strand, 6333843 - 6333754
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaac 144  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||| ||||||| |||||||| ||||| ||||||||||||||||||||    
T  6333843 cacttggttcagatgacttttacactgaaccgcgcgattcggttcgatttgcggcttgcatcttagcaaccgaaccaaaccaaaccaaac 6333754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 26477761 - 26477841
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaa 142  Q
    ||||||||||||||  ||| ||||| ||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  26477761 ttcggatgacttttgtactaaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaa 26477841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 30193548 - 30193640
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||| |||||||||  | ||||||| |||||||||||| |||||| |||||||||||||||| ||||||||||||||||| ||||||| ||||    
T  30193548 ttcgtatgacttttgcaatgaaccgtgcggttcggttcagtttgcagtttgcatctcagcaaccgaaccaaaccaaaccataccgcaagaata 30193640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 135
Target Start/End: Complemental strand, 52345363 - 52345283
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    |||||||||||||||||||||  |||||| |||  |||||||||||||||| ||||||||||||||||| |||||||||||    
T  52345363 cacttggttcggatgacttttgtactgaatcgcatggttcggttcggtttgtggtttgcatctcagcaaccgaaccaaacc 52345283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 66 - 145
Target Start/End: Complemental strand, 32137203 - 32137124
Alignment:
Q  66 gatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaacc 145  Q
    ||||||||||  | ||||||| ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||    
T  32137203 gatgacttttgcaatgaaccgtgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaatcaaaccaaacc 32137124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 63 - 119
Target Start/End: Complemental strand, 10219187 - 10219131
Alignment:
Q  63 tcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctca 119  Q
    |||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||    
T  10219187 tcggatgacttttacactgaaccgcgcggttcggtttggtttgcggtttgcatctca 10219131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 58 - 154
Target Start/End: Original strand, 40806389 - 40806480
Alignment:
Q  58 ttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||||||| |||||||||| ||||| | ||     ||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  40806389 ttggttcggatgacttttacactgaaccgcacggtttgatt-----tgcggtttgcatctcagcaactgaaccaaaccaaaccaaaccgcaagaata 40806480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 78 - 154
Target Start/End: Complemental strand, 51395329 - 51395253
Alignment:
Q  78 actgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||||||||||| ||||||||| |||| |||||| ||||| || | |||||||||||||||||||||||||| ||||    
T  51395329 actgaaccgcgcagttcggttcagtttacggtttacatctgagaagtcgaaccaaaccaaaccaaaccgcaagaata 51395253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 8176185 - 8176253
Alignment:
Q  67 atgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    |||||||||  |||||||||||  |||||||||| |||||||||||||||||||||| | |||||||||    
T  8176185 atgacttttgcactgaaccgcgtcgttcggttcgatttgcggtttgcatctcagcaaccaaaccaaacc 8176253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 90 - 135
Target Start/End: Complemental strand, 31301877 - 31301832
Alignment:
Q  90 ggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaacc 135  Q
    ||||| |||||||||||||||||||||||||||| |||||||||||    
T  31301877 ggttcagttcggtttgcggtttgcatctcagcaaccgaaccaaacc 31301832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 202 - 242
Target Start/End: Complemental strand, 29639972 - 29639932
Alignment:
Q  202 gtgaacccaagcccaagcccaacactatcgagctattcatt 242  Q
    ||||||||||||||||||||||||||||| |||||||||||    
T  29639972 gtgaacccaagcccaagcccaacactatccagctattcatt 29639932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 154
Target Start/End: Complemental strand, 43631007 - 43630956
Alignment:
Q  103 ttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||  ||||||||||| ||||||||||||||||||||||||| ||||    
T  43631007 ttgcggttgacatctcagcaaccgaaccaaaccaaaccaaaccgcaagaata 43630956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 102 - 154
Target Start/End: Original strand, 23937130 - 23937182
Alignment:
Q  102 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||| ||||||||||||| |||  |||||||||||||| ||||||||| ||||    
T  23937130 tttgtggtttgcatctcaacaactgaaccaaaccaaactaaaccgcaagaata 23937182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 149
Target Start/End: Original strand, 48653492 - 48653520
Alignment:
Q  121 caatcgaaccaaaccaaaccaaaccgcaa 149  Q
    |||||||||||||||||||||||||||||    
T  48653492 caatcgaaccaaaccaaaccaaaccgcaa 48653520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 157; Significance: 1e-83; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 61 - 237
Target Start/End: Original strand, 5484 - 5660
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  5484 gttcgaatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccgcaaaaatactcaat 5583  T
Q  161 gttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatcgagctat 237  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  5584 gttattaaactaagtaagtaccgtactagcccaataccaaagtgaacccaagcccaagctcaacactatccagctat 5660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 133; Significance: 3e-69; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 61 - 230
Target Start/End: Original strand, 5802523 - 5802689
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||    
T  5802523 gttcagatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagc-----aaccaaaccaaaccaaaccgcaaaaatactcaat 5802617  T
Q  161 gttattaa--actaagtaagtactgtactagcccaataccaaagtgaacccaagcccaagcccaacactatc 230  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  5802618 gttattaaacactaagtaagtactgtactagcccaataccaaagtgaacccaaacccaagcccaacactatc 5802689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 61 - 217
Target Start/End: Original strand, 3006204 - 3006360
Alignment:
Q  61 gttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcg-----aaccaaaccaaaccaaaccgcaaaaatac 155  Q
    |||||||| |||||||||||||||||||||||     |||||||||||||||||||||||||| ||     |||||||||||||||||||||||||||||    
T  3006204 gttcggattacttttagactgaaccgcgcggt-----tcggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaaccaaaccgcaaaaatac 3006298  T
Q  156 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgaacccaagcccaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3006299 tcaatgttattaaactaagtaagtactgtactagcccaataccaaagtgagcccaagcccaa 3006360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 44673239 - 44673147
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||| ||||    
T  44673239 ttcggatgacttttgcactgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaccaaactgcaagaata 44673147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 62 - 140
Target Start/End: Complemental strand, 14549738 - 14549660
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  14549738 ttcggatgacttttgcactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcatccgaaccaaaccaaacc 14549660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 30392594 - 30392502
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  |||||||||||||||| ||||| |||||||||||| |||||| ||| ||||||||||||||||||||||||| ||||    
T  30392594 ttcggatgacttttttactgaaccgcgcggtttggttcagtttgcggtttgtatctcaacaaccgaaccaaaccaaaccaaaccgcaagaata 30392502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 3682427 - 3682350
Alignment:
Q  63 tcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    |||||||||||||  |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||||||||    
T  3682427 tcggatgacttttccactgaaccgcgcggtttggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaacc 3682350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 36827360 - 36827452
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    |||| |||||||||  |||||||| | ||||| ||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  36827360 ttcgaatgacttttgcactgaaccacacggtttggttcggtttgcggtttgcatctcagcagccgaaccaaaccaaaccaaaccgcaagaata 36827452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 55 - 149
Target Start/End: Complemental strand, 10661669 - 10661576
Alignment:
Q  55 cacttggttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaa 149  Q
    |||||||||| ||||||||||  |||||||| ||||||| |||| |||||||| ||||||||||||||| | ||| |||||||||||||||||||    
T  10661669 cacttggttcagatgacttttgcactgaaccacgcggtttggtttggtttgcg-tttgcatctcagcaaccaaactaaaccaaaccaaaccgcaa 10661576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 6200504 - 6200596
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  |||||| || ||||||  |||||||||  ||||||||||| ||||| | ||||||||||||||||||||||| ||||    
T  6200504 ttcggatgacttttgcactgaatcgtgcggtttcgttcggtttttggtttgcatcttagcaaccaaaccaaaccaaaccaaaccgcaagaata 6200596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 140
Target Start/End: Original strand, 36909934 - 36909994
Alignment:
Q  80 tgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaacc 140  Q
    ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||||||    
T  36909934 tgaactgcgcggttcggttcggtttgcggtttgcatctcaggaaccgaaccataccaaacc 36909994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 18169599 - 18169676
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaac 139  Q
    ||||||| ||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||    
T  18169599 ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaac 18169676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 62 - 139
Target Start/End: Original strand, 18633165 - 18633242
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaac 139  Q
    ||||||| ||||||  ||||||||||| ||||||||| ||||||||||||||||||| |||  ||||||||| |||||    
T  18633165 ttcggattacttttgcactgaaccgcgtggttcggtttggtttgcggtttgcatctcggcagccgaaccaaatcaaac 18633242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 160
Target Start/End: Complemental strand, 33069067 - 33069009
Alignment:
Q  102 tttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaatactcaat 160  Q
    |||||||||||||||| ||||| |||||||||| |||||||||| |||||||| |||||    
T  33069067 tttgcggtttgcatcttagcaaccgaaccaaacgaaaccaaaccacaaaaataatcaat 33069009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 69103 - 69195
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||    
T  69103 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 69195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0059; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 77209 - 77301
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||| |||||| ||||    
T  77209 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcagcaaccgaaccaaaccaaaacaacccgcaagaata 77301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 57; Significance: 7e-24; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 62 - 154
Target Start/End: Complemental strand, 106550 - 106458
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  | ||||||||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||| |||||| ||||    
T  106550 ttcggatgacttttgcaatgaaccgcgcggttcggtttggtttgcggtttgcatctcaacaaccgaaccaaacccaaccaacccgcaagaata 106458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 40142 - 40234
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||||||||||| || |||||| |||||| ||||| ||||||| ||| ||||||||||||||||||||| ||| ||||    
T  40142 ttcggatgacttttgcactgaaccgcgtggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaata 40234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 62 - 154
Target Start/End: Original strand, 47338 - 47430
Alignment:
Q  62 ttcggatgacttttagactgaaccgcgcggttcggttcggtttgcggtttgcatctcagcaatcgaaccaaaccaaaccaaaccgcaaaaata 154  Q
    ||||||||||||||  ||||||||||  || |||||| |||||| ||||| ||||||| ||| ||||||||||||||||||||| ||| ||||    
T  47338 ttcggatgacttttgcactgaaccgcatggctcggtttggtttgtggttttcatctcaacaaccgaaccaaaccaaaccaaaccacaagaata 47430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University