View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_30 (Length: 259)
Name: NF6665_high_30
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_30 |
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| [»] scaffold0003 (1 HSPs) |
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| [»] scaffold0902 (1 HSPs) |
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| [»] scaffold1118 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 242
Target Start/End: Original strand, 20421108 - 20421349
Alignment:
| Q |
1 |
ttagtatatgagttcggtttttatgcttacttgcttagcaatttccgtgtgaaaaagaagataacttgatccttattggttgatcagaatcactttcact |
100 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20421108 |
ttagtatatgagttccgtttttatgcttacttgcttagcaatttctgtgtgaaaaagaagataacttgatccttattggttgatcagaatcactttcact |
20421207 |
T |
|
| Q |
101 |
atgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagannnnnnnncttagtgtttaggtccaggggaattgatgaagtcttctaac |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20421208 |
atgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagattttttttcttagtgtttaggtccaggggaattgatgaagtcttctaac |
20421307 |
T |
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| Q |
201 |
attggcatagtactagagtgaacatgtgttgtgataaagttt |
242 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
20421308 |
attggcatagtactagagtgaacatgtgttgtgataaagttt |
20421349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 9884808 - 9884570
Alignment:
| Q |
1 |
ttagtatatgagttcggtttttatgcttacttgcttagcaatttccgtgtgaaaaagaagataacttgatccttattggttgatcagaatcactttcact |
100 |
Q |
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||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| |||||||||| |
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| T |
9884808 |
ttagtatatgaattctgtttttatgcttacttgcttagcaatttctgtgtgaaaaagaagataacttgatccttattggttggtcagaaacactttcact |
9884709 |
T |
|
| Q |
101 |
atgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagannnnnnnncttagtgtttaggtccaggggaattgatgaagtcttctaac |
200 |
Q |
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| T |
9884708 |
atgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagattttttttcttagtgtttaggtccaggggaattgatgaagtcttctaac |
9884609 |
T |
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| Q |
201 |
attggcatagtactagagtgaacatgtgttgtgataaag |
239 |
Q |
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|||||| ||||||||||||||||||||| |||||||||| |
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| T |
9884608 |
attggcctagtactagagtgaacatgtgctgtgataaag |
9884570 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 102 - 215
Target Start/End: Original strand, 111849 - 111962
Alignment:
| Q |
102 |
tgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagannnnnnnncttagtgtttaggtccaggggaattgatgaagtcttctaaca |
201 |
Q |
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|||||||||||||||||||||||||| ||||| ||||||||||||||||| ||| |||||| |||||||||||||||||||||||||||||| |
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| T |
111849 |
tgaaaatgaatttcagcagagtaactaatttgtatttttcttgttatagattattttttttattgtttatgtccaggggaattgatgaagtcttctaaca |
111948 |
T |
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| Q |
202 |
ttggcatagtacta |
215 |
Q |
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||||| |||||||| |
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| T |
111949 |
ttggcctagtacta |
111962 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 102 - 239
Target Start/End: Original strand, 135034 - 135177
Alignment:
| Q |
102 |
tgaaaatgaatttcagcagagtaactgatttgaatttttcttgttatagannnnnnnnctt------agtgtttaggtccaggggaattgatgaagtctt |
195 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||| || | |||||| |||||||||||||||||| ||||| |
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| T |
135034 |
tgaaaatgaatttcagcagagtaactggtttgtatttttcttgttatagatttttttttttttttttactgtttatgtccaggggaattgatgacgtctt |
135133 |
T |
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| Q |
196 |
ctaacattggcatagtactagagtgaacatgtgttgtgataaag |
239 |
Q |
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||||||||||| ||||||||||||||||||||| ||||| |||| |
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| T |
135134 |
ctaacattggcctagtactagagtgaacatgtgctgtgaaaaag |
135177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 160 - 225
Target Start/End: Original strand, 15607059 - 15607124
Alignment:
| Q |
160 |
cttagtgtttaggtccaggggaattgatgaagtcttctaacattggcatagtactagagtgaacat |
225 |
Q |
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|||| ||||||||||||||||||||||||||||||||| |||||| | | |||||||| ||||||| |
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| T |
15607059 |
cttactgtttaggtccaggggaattgatgaagtcttctgacattgtccttgtactagattgaacat |
15607124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0902 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0902
Description:
Target: scaffold0902; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Complemental strand, 2146 - 2089
Alignment:
| Q |
160 |
cttagtgtttaggtccaggggaattgatgaagtcttctaacattggcatagtactaga |
217 |
Q |
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|||| |||||||||| |||||||||||||||| ||||| |||||||| |||||||||| |
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| T |
2146 |
cttactgtttaggtctaggggaattgatgaagacttctgacattggcctagtactaga |
2089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1118 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1118
Description:
Target: scaffold1118; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 206
Target Start/End: Complemental strand, 2345 - 2309
Alignment:
| Q |
170 |
aggtccaggggaattgatgaagtcttctaacattggc |
206 |
Q |
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||||| |||||||||||||||||||||| |||||||| |
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| T |
2345 |
aggtctaggggaattgatgaagtcttcttacattggc |
2309 |
T |
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