View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_35 (Length: 246)
Name: NF6665_high_35
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_35 |
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Alignment Details
Target: chr6 (Bit Score: 221; Significance: 1e-122; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 11526007 - 11526235
Alignment:
| Q |
1 |
ctgcaaatggattattgaatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctggaacaaagatattcc |
100 |
Q |
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| T |
11526007 |
ctgcaaatggattattggatctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctggaacaaagatattcc |
11526106 |
T |
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| Q |
101 |
tccatcaaagtctttgatgattaggcgattgatgcaagagaaaatccccggtgataaaaggttaatggaaagaggctgtcagtttgcttctatgtgcagc |
200 |
Q |
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| T |
11526107 |
tccatcaaagtctttgatgattaggcgattgatgcaagagaaaatccccagtgataaaaggttaatggaaagaggctgtcagtttgcttctatgtgcagc |
11526206 |
T |
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| Q |
201 |
ctttgtttcaagagttcagaatcttcctt |
229 |
Q |
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| T |
11526207 |
ctttgtttcaagagttcagaatcttcctt |
11526235 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 30221049 - 30221141
Alignment:
| Q |
21 |
ctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctggaacaaagatattcctccatcaaagtct |
113 |
Q |
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| T |
30221049 |
ctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtggccaaagttaatttggaataaggatattcctccctcaaagtct |
30221141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Complemental strand, 17628840 - 17628748
Alignment:
| Q |
21 |
ctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctggaacaaagatattcctccatcaaagtct |
113 |
Q |
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| T |
17628840 |
ctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtggccaaagttaatttggaataaggatattcctccctcaaagtct |
17628748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 32021447 - 32021539
Alignment:
| Q |
21 |
ctcaagcatgcttatgtgttcaaaagaaacaacattgaagaaatgaaatggaccaaattaatctggaacaaagatattcctccatcaaagtct |
113 |
Q |
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| T |
32021447 |
ctcaagcaagcttatgttttcaagagaaataataatgaagatctgaagtggccaaagttaatttggaataaggatattcctccctcaaagtct |
32021539 |
T |
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