View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6665_high_38 (Length: 239)
Name: NF6665_high_38
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_38 |
 | |
|
| [»] scaffold0237 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 145; Significance: 2e-76; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 3347822 - 3347981
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
3347822 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattcttgtgtgcttctctctattatacccttgttaaaaactgaacatgcttgtaa |
3347921 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
3347922 |
tttgacgaaaatatattaaattatggc-ttgaagtttatggaaaaattgaatgttctaaac |
3347981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 46830535 - 46830375
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
46830535 |
aagcttccagcaagtttttctttttgtgttagaagcttccagcaaattcttgtgtgcttctctctattatacccttgttaaaaactgaacatgcttgtaa |
46830436 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46830435 |
tttgacgaaaatatattaaactatggctttgaagtttatggaaaaattgaatgttctaaac |
46830375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 129; Significance: 7e-67; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 31933363 - 31933523
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
|||||||||||||||| || | ||||||||||||||||||| |||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31933363 |
aagcttccagcaagtttttttttttgtgttacaagcttccagcaaattattgtgtgcttctctctattatacccttgttaaaaactgaacatgcttgtaa |
31933462 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31933463 |
tttgacgaaaatatattaaactatggctttgaagtttatggaaaaattgaatgttctaaac |
31933523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 42850707 - 42850549
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
|||||||||||||||| |||| ||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850707 |
aagcttccagcaagtttttct--ttgtgttacaaacttccagcaaattcttgtgtgcttctctctattatacccttgttaaaaactgaacatgcttgtaa |
42850610 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42850609 |
tttgacgaaaatatattaaactatggctttgaagtttatggaaaaattgaatgttctaaac |
42850549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0237 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: scaffold0237
Description:
Target: scaffold0237; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 25844 - 26003
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
25844 |
aagcttccagcaagttcttctttttgtgttacaag-ttctagcaaattcttgtgtgcttctctctattatacccttgttaaaaactgaacatgctagtaa |
25942 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25943 |
tttgacgaaaatatattaaactatggctttgaagtttatggaaaaattgaatgttctaaac |
26003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 125; Significance: 2e-64; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 178
Target Start/End: Original strand, 29886291 - 29886450
Alignment:
| Q |
18 |
aagcttccagcaagttcttctctttgtgttacaagcttccatcaaattctggtgtgcttctctatattatacccttgttaaaaactgaacatgcttgtaa |
117 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| ||| | |||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||| |
|
|
| T |
29886291 |
aagcttccagcaagttcttctttttgtgttacaag-ttctagcaaattcttgtgtgcttctctctattatacccttgttaaaaactgaacatgctagtaa |
29886389 |
T |
|
| Q |
118 |
tttgacgaaaatatattaaattatggctttgaagtttatggaaaaattgaatgttctaaac |
178 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29886390 |
tttgacgaaaatatattaaactatggctttgaagtttatggaaaaattgaatgttctaaac |
29886450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University