View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_41 (Length: 228)
Name: NF6665_high_41
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 23522499 - 23522720
Alignment:
| Q |
1 |
aactttcttacttgcaaaagaatttaagagaagatatttactagtattatttaatattgagtagcatttatatagccattacaaaggaaaataaa-gccc |
99 |
Q |
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|||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23522499 |
aactatcttacttgcaaaagaatttaagagaagatatgtactagtattatttaatattgagtagcatttatatagccattacaaaggaaaataaaagccc |
23522598 |
T |
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| Q |
100 |
agaagtacacaaactgtgatcataaattacctatttaatcctctaccatatatctatatagttgagcatcatcttcagtctgttatctgtgatctatttt |
199 |
Q |
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| T |
23522599 |
agaagtacacaaactgtgatcataaattaactatttaatcctctaccatatatctatatagttgagcatcatcttcagtctgttatctgtgatctatttt |
23522698 |
T |
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| Q |
200 |
tacttatatatggcctatgcta |
221 |
Q |
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||||||||||||||||||||| |
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| T |
23522699 |
cacttatatatggcctatgcta |
23522720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 195
Target Start/End: Original strand, 23517234 - 23517356
Alignment:
| Q |
71 |
tatagccattacaaaggaaaataaagcccagaagtacacaaactgtgatcataaattacctatttaatcctctaccatatatctatatagttgagcatca |
170 |
Q |
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|||||||||||||||||||| |||| | | || ||||||||| ||||||||||||| |||||| ||||||||| |||||| ||||||||||||||| |
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| T |
23517234 |
tatagccattacaaaggaaagtaaaaac--gcagaacacaaactatgatcataaattaactatttcatcctctactatatatagttatagttgagcatca |
23517331 |
T |
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| Q |
171 |
tcttcagtctgttatctgtgatcta |
195 |
Q |
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||||| || ||||||||||||||| |
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| T |
23517332 |
tcttccatcagttatctgtgatcta |
23517356 |
T |
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