View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_7 (Length: 421)
Name: NF6665_high_7
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 321
Target Start/End: Complemental strand, 11031176 - 11030851
Alignment:
| Q |
1 |
accttatccgaagac-gtgtcacaatttacacatcgtgctacaattttctgtaagtagccattaccagattatgcctaaatatcgtgcccaagggagttt |
99 |
Q |
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| T |
11031176 |
accttatccgaataccgtgtcactatttacacatcatgctacaattttctgtcagtagccattaccagattatgcctaaatatcgtgcccaaggaagttt |
11031077 |
T |
|
| Q |
100 |
cttattaaataacaaatgtacttgtcagaaaca------ctgagtggatcatgctactaatgaagatccagaatcataaattctatttgcatggcacatg |
193 |
Q |
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||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
11031076 |
cttattaaataacaaatgtacttatcagaaacagaaacactgagtggatcatgctactaatgaagatccagaatcataaattccatttgcatggcacatg |
11030977 |
T |
|
| Q |
194 |
caatctgggtatgggaagatatatatggagtcattatgccttttgagctcaacgatcccttggaatcactgtgtgacatcatgctctgcaattggcactt |
293 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11030976 |
caatctgggtatggaaagatatatatggagtcattatgccttttgagctcaac--tcccttggaatcactgtgtgacatcatgctctgcaattggtgctt |
11030879 |
T |
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| Q |
294 |
gagacttttccatctataaagtattcaa |
321 |
Q |
| |
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|||| ||||||||||||||||||||||| |
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| T |
11030878 |
gagaattttccatctataaagtattcaa |
11030851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 225 - 362
Target Start/End: Original strand, 10931505 - 10931639
Alignment:
| Q |
225 |
cattatgccttttgagctcaacgatcccttggaatcactgtgtgacatcatgctctgcaattggcacttgagacttttccatctataaagtattcaaatt |
324 |
Q |
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|||||||||||||||||||||| ||||||||||||||| |||||| ||||||||||||| | | ||||||| |||||||||||||||||||||||||| |
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| T |
10931505 |
cattatgccttttgagctcaac--tcccttggaatcactttgtgacttcatgctctgcaaatagtgcttgagaattttccatctataaagtattcaaatt |
10931602 |
T |
|
| Q |
325 |
tgagttaaattcttcctacaaataaataagataagatc |
362 |
Q |
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| T |
10931603 |
agagttaaattcttcctacaaat-aataagataagatc |
10931639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 178 - 329
Target Start/End: Original strand, 11042660 - 11042809
Alignment:
| Q |
178 |
atttgcatggcacatgcaatctgggtatgggaagatatatatggagtcattatgccttttgagctcaacgatcccttggaatcactgtgtgacatcatgc |
277 |
Q |
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|||||||||||||||||||||||| |||| ||| ||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||| |||||| |
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| T |
11042660 |
atttgcatggcacatgcaatctggacatggaaagctatatgtggagtcattaggccttttgagctcaaca--cccttggaatcactgtgtgacctcatgc |
11042757 |
T |
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| Q |
278 |
tctgcaattggcacttgagacttttccatctataaagtattcaaatttgagt |
329 |
Q |
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| T |
11042758 |
tcagcaattggtgcttaagacttttccatctataaagtaatcaaattagagt |
11042809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 7e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 174 - 308
Target Start/End: Original strand, 32924291 - 32924423
Alignment:
| Q |
174 |
ttctatttgcatggcacatgcaatctgggtatgggaagatatatatggagtcattatgccttttgagctcaacgatcccttggaatcactgtgtgacatc |
273 |
Q |
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||||||| ||| ||||||| || ||||| |||| ||| | ||||| |||||||| | |||||||||||||| |||||||||||||||||||||| || |
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| T |
32924291 |
ttctattggcacggcacatacattctggacatggaaagctgtatatagagtcatttggtcttttgagctcaac--tcccttggaatcactgtgtgacctc |
32924388 |
T |
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| Q |
274 |
atgctctgcaattggcacttgagacttttccatct |
308 |
Q |
| |
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||| || ||| ||||| ||||| |||| ||||||| |
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| T |
32924389 |
atgttcagcagttggcgcttgaaacttctccatct |
32924423 |
T |
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