View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_high_8 (Length: 419)
Name: NF6665_high_8
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_high_8 |
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Alignment Details
Target: chr6 (Bit Score: 219; Significance: 1e-120; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 11 - 247
Target Start/End: Original strand, 17170966 - 17171204
Alignment:
| Q |
11 |
atcatcaatttaattcttaaactattatagaaaacaacgaattttgttaaataaa-taacaaaatggttagatgagatattagttataaaatatctattg |
109 |
Q |
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| T |
17170966 |
atcatcaatttaattcttaaactattatagaaaacaacgaattttgttaaataaaataacaaaatggttagatgagatattagttataaaatatctattg |
17171065 |
T |
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| Q |
110 |
agtagtctcatatcaatgaacataatatgaaaa-actttgttgagaatgaagcaccaatgtgtttgatgttaataaggatggatcaattttgtgagagtg |
208 |
Q |
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| T |
17171066 |
agtagtctcatatcaatgaacataatatgaaaaaactttgttgagaatgaagcaccaatgtgtttgatgttgataaggatggatcaattttgtgagagtg |
17171165 |
T |
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| Q |
209 |
gtaaaattgatggagcaaaattgcaattaaaggctacat |
247 |
Q |
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| T |
17171166 |
gtaaaattgatggagcaaaattgcaattaaaggctacat |
17171204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 350 - 397
Target Start/End: Original strand, 17171272 - 17171319
Alignment:
| Q |
350 |
tgcactaatcatgtgtgtaaaattaaataaaatttgacccggttggaa |
397 |
Q |
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| T |
17171272 |
tgcactgatcatgtgtgtaaaattaaataaaatttgatccggttggaa |
17171319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 287 - 330
Target Start/End: Original strand, 17171211 - 17171255
Alignment:
| Q |
287 |
aatatcaaaataaggccttta-ttagattttatacaaatagacaa |
330 |
Q |
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| T |
17171211 |
aatatcaaaataaggtctttaattagattttatacaaataaacaa |
17171255 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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