View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_11 (Length: 394)

Name: NF6665_low_11
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_11
NF6665_low_11
[»] chr7 (6 HSPs)
chr7 (1-249)||(6323772-6324020)
chr7 (345-394)||(6324116-6324165)
chr7 (183-249)||(28124871-28124938)
chr7 (183-249)||(4895465-4895532)
chr7 (119-180)||(4880093-4880155)
chr7 (186-239)||(44963050-44963103)
[»] chr2 (1 HSPs)
chr2 (75-126)||(18776553-18776604)
[»] chr3 (1 HSPs)
chr3 (111-169)||(26667306-26667364)
[»] chr4 (1 HSPs)
chr4 (183-249)||(52520482-52520549)
[»] chr6 (1 HSPs)
chr6 (183-248)||(5378613-5378679)


Alignment Details
Target: chr7 (Bit Score: 221; Significance: 1e-121; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 249
Target Start/End: Original strand, 6323772 - 6324020
Alignment:
Q  1 ttttactgttcttggtgttgggagaagcgtgtttctttacgcacaactcatctcaacttctcaattgggcctgggcttcatcagaactttgttgggcctc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  6323772 ttttattgttcttggtgttgggagaagcgtgtttctttacgcacaactcatctcaacttctcaattgggtctgggcttcatcaaaactttgttgggcctc 6323871  T
Q  101 aatatgggcattctatgttttcctatcattttttgtcatttgctagttttatccccgattttacttagttacttaaatattaactttcattgtattccaa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  6323872 aatatgggcattctatgttttcctatcattttttgtcatttgctagttttatccccgattttacttagttacttaaatattaactttcattgtattcgaa 6323971  T
Q  201 acttaaatagtggatttccccattttgagtttgagggagactgttaaaa 249  Q
    ||| |||||||||||||||||||||||||||||||| ||| ||||||||    
T  6323972 actcaaatagtggatttccccattttgagtttgaggtagattgttaaaa 6324020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 345 - 394
Target Start/End: Original strand, 6324116 - 6324165
Alignment:
Q  345 atcgttctagttagtatcatagaagactataaatatgtcacttcattgta 394  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  6324116 atcgttctagttagtattatagaggactataaatatgtcacttcattgta 6324165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Complemental strand, 28124938 - 28124871
Alignment:
Q  183 actttcattgtattccaaacttaaatag-tggatttccccattttgagtttgagggagactgttaaaa 249  Q
    |||||||||||||||||| || |||| | || |||||||||||||||||||||||||| |||||||||    
T  28124938 actttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaa 28124871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 4895465 - 4895532
Alignment:
Q  183 actttcattgtattccaaacttaaatagtggattt-ccccattttgagtttgagggagactgttaaaa 249  Q
    |||||||||||||||||| || |||| |  ||||| |||||||||||||||||||||| |||||||||    
T  4895465 actttcattgtattccaagctcaaattggtgattttccccattttgagtttgagggaggctgttaaaa 4895532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 180
Target Start/End: Original strand, 4880093 - 4880155
Alignment:
Q  119 tttcctatca-ttttttgtcatttgctagttttatccccgattttacttagttacttaaatat 180  Q
    |||||||||| |||||||||||||||||||| || |||| |||||| |||||||||| |||||    
T  4880093 tttcctatcagttttttgtcatttgctagttgtaccccccattttatttagttacttcaatat 4880155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 44963050 - 44963103
Alignment:
Q  186 ttcattgtattccaaacttaaatagtggatttccccattttgagtttgagggag 239  Q
    ||||||||||| |||||| |||| ||| |||| |||||||||||||||||||||    
T  44963050 ttcattgtatttcaaactcaaattgtgaattttcccattttgagtttgagggag 44963103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 75 - 126
Target Start/End: Original strand, 18776553 - 18776604
Alignment:
Q  75 gcttcatcagaactttgttgggcctcaatatgggcattctatgttttcctat 126  Q
    |||| ||||||||||||||||||||||||||| |||||||||||||||||||    
T  18776553 gctttatcagaactttgttgggcctcaatatgagcattctatgttttcctat 18776604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 111 - 169
Target Start/End: Complemental strand, 26667364 - 26667306
Alignment:
Q  111 ttctatgttttcctatcattttttgtcatttgctagttttatccccgattttacttagt 169  Q
    ||||||||||||||||||||||||||||||| || |||||| || ||||||||||||||    
T  26667364 ttctatgttttcctatcattttttgtcatttacttgttttaccctcgattttacttagt 26667306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 183 - 249
Target Start/End: Original strand, 52520482 - 52520549
Alignment:
Q  183 actttcattgtattccaaacttaaatag-tggatttccccattttgagtttgagggagactgttaaaa 249  Q
    |||||||||||||||||| || |||| | || |||||||||||||||||||||||||| |||||||||    
T  52520482 actttcattgtattccaagctcaaattggtgaatttccccattttgagtttgagggaggctgttaaaa 52520549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 5378613 - 5378679
Alignment:
Q  183 actttcattgtattccaaacttaaatag-tggatttccccattttgagtttgagggagactgttaaa 248  Q
    |||||||||||||||||| || |||| | || |||||||||||||||||||||||||| ||||||||    
T  5378613 actttcattgtattccaatctcaaattggtgaatttccccattttgagtttgagggaggctgttaaa 5378679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University