View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_12 (Length: 390)
Name: NF6665_low_12
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 8048381 - 8048531
Alignment:
| Q |
1 |
agttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggttgggttgaggttttgtacaacaataatactgcaaaaatatgcata |
100 |
Q |
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| T |
8048381 |
agttgcaaattaggtccagcctgtcggtccgtttaacctgctattttaggcaggctgggttgaggttttgtacaacaataatactgcaaaaatatgcata |
8048480 |
T |
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| Q |
101 |
aatttcaacaaaattagaatactaaaattatttatagcctcattgattatg |
151 |
Q |
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| T |
8048481 |
aatttcaacaaaattagaatactaaaattatttatagcctcattgattatg |
8048531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 209 - 329
Target Start/End: Original strand, 8048533 - 8048653
Alignment:
| Q |
209 |
acatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaattacttggaaatttctcatgataaccccttctttggagagatt |
308 |
Q |
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| T |
8048533 |
acatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaattacttggaaatttctcatgataaccccttctttggagagatt |
8048632 |
T |
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| Q |
309 |
gaaggactaataggagacata |
329 |
Q |
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| T |
8048633 |
gaaggactaataggagacata |
8048653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 205 - 372
Target Start/End: Original strand, 8046230 - 8046398
Alignment:
| Q |
205 |
atggacatgcacattcacatgacctattgttcttgtgaaggtttcaaaattttggccgcaat-tacttggaaatttctcatgataaccccttctttggag |
303 |
Q |
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| T |
8046230 |
atggacatgcacattcacatgtcttattgttcttatgaaggtttcaaaattttagcttcaaactacttggatatttcccatgataaccctttctttggag |
8046329 |
T |
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| Q |
304 |
agattgaaggactaataggagacatacagataacagcagcccaagtggcagaggaattgatgaagaacg |
372 |
Q |
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| T |
8046330 |
agattgaaggactaattgaagacatacaaataacacctgcacaagttgccgaggaattgatgaagaacg |
8046398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 158 - 209
Target Start/End: Original strand, 8046088 - 8046139
Alignment:
| Q |
158 |
tgatagatggatgcagttgacaatatcttgattactgaacttcatagatgga |
209 |
Q |
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| T |
8046088 |
tgatggatggatgcagttgacactatctggattattgaactttatagatgga |
8046139 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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