View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6665_low_13 (Length: 389)
Name: NF6665_low_13
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 381
Target Start/End: Original strand, 42452864 - 42453227
Alignment:
| Q |
18 |
attgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatga |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452864 |
attgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatga |
42452963 |
T |
|
| Q |
118 |
tccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaaggatagggaaggtgaga |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42452964 |
tccatctacatttttcattatttctgtgtttgataatagtcaattacatgaagaatatatagctgctggagcaaacgatacaaggatagggaaggtgaga |
42453063 |
T |
|
| Q |
218 |
atcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaagatgggggaaattcaat |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42453064 |
atcagtctatcagaaatggaaatcaacaccgtttacaattattcttatcctcttgttcaacttcaaccttctgggctgaagaagatgggggaaattcaat |
42453163 |
T |
|
| Q |
318 |
tgtctttcaagtttactagcccttctaaagctaatttgtacaaaaagtacacagtgcctatgct |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||| |
|
|
| T |
42453164 |
tgtctttcaagtttactagcccttctaaagctaatttgtataaaaagtacacaatgccaatgct |
42453227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 27253745 - 27253643
Alignment:
| Q |
18 |
attgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatga |
117 |
Q |
| |
|
||||||||||||| ||||| || |||||||| | |||| ||| ||||| |||||||||| |||| ||||||||||||||| ||||| | || ||||| |
|
|
| T |
27253745 |
attgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatagtctttcaccaaggtggaatgagcaatatacttgggaagtttatga |
27253646 |
T |
|
| Q |
118 |
tcc |
120 |
Q |
| |
|
||| |
|
|
| T |
27253645 |
tcc |
27253643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 21197903 - 21197801
Alignment:
| Q |
18 |
attgtgtagctaaatatggctcaaaatgggttcggtcaagaactgttgttaatagtctttctccaaagtggaatgagcaatactcttggaaggtctatga |
117 |
Q |
| |
|
||||||||||||| ||||| || |||||||| | |||| ||| ||||| ||| |||||| |||| ||||||||||||||| ||||| | || ||||| |
|
|
| T |
21197903 |
attgtgtagctaagtatggttctaaatgggtgagaacaaggactattgttgatattctttcaccaaggtggaatgagcaatatacttgggaagtttatga |
21197804 |
T |
|
| Q |
118 |
tcc |
120 |
Q |
| |
|
||| |
|
|
| T |
21197803 |
tcc |
21197801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University