View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_14 (Length: 359)
Name: NF6665_low_14
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_14 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 3 - 346
Target Start/End: Original strand, 9804780 - 9805122
Alignment:
| Q |
3 |
atcagaaaaaagaaccatgaaacttcactgagatcgacatcgaccagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttttcatg |
102 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9804780 |
atcagaaaaaagaaccatgaaacttcactgagatcgacatcgatcagtcgccgttgccaacctctcatgaatggttatctcttttgatggagttttcatg |
9804879 |
T |
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| Q |
103 |
aaacttcaacctcgtttcattatttgggcaaaaaaggtaatcaaaactttttccacannnnnnn-atctagatcattttgcatgtctttctctgatttgt |
201 |
Q |
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||| ||||||||||||||||||||||||||| |||||||||| ||||||||| || | ||||||||||||||||||||||||||| |||||| |
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| T |
9804880 |
aaagttcaacctcgtttcattatttgggcaagaaaggtaatccaaacttttttcatattttttttatctagatcattttgcatgtctttctcaaatttgt |
9804979 |
T |
|
| Q |
202 |
ggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaatttattatctacacatggatttcttttctactct |
301 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| || |||||| |
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| T |
9804980 |
ggttgtcttttatgtgagtggtttcaaacatcatactatgtaataaatacatggattttattttaatttattatccacacatggatttc--ttatactct |
9805077 |
T |
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| Q |
302 |
tcaaattccccatcttacctttggggaagagtcttcctcctcatc |
346 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9805078 |
tcaaattccccatcttacctttggggaagagtcttcctcctcatc |
9805122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 74 - 346
Target Start/End: Original strand, 9817777 - 9818049
Alignment:
| Q |
74 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatcaaaactttttccacannnnnnnatctaga |
173 |
Q |
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| T |
9817777 |
tggttatctcttttgatggaattttcatgaaacttcaacctcgttccattatttgggcaaaaaaggtaatcaaaactttttccacatttttttatctaga |
9817876 |
T |
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| Q |
174 |
tcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaatttatt |
273 |
Q |
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| T |
9817877 |
tcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaatttatt |
9817976 |
T |
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| Q |
274 |
atctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatc |
346 |
Q |
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| T |
9817977 |
atctacacatggatttcttttctactcttcaaattccccatcttacctttggggaagagtcttcctcctcatc |
9818049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 223 - 343
Target Start/End: Complemental strand, 9806792 - 9806672
Alignment:
| Q |
223 |
tttcaaacatcatactatgtgataaatacatggattttattttaatttattatctacacatggatttctt-ttctactcttcaaattccccatcttacct |
321 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| |||||| || ||||| | ||||| ||||||||||||||||||||| |||| || |
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| T |
9806792 |
tttcaaacatcatactatgtaataaatacatggattttattttattttattgggtagacatgaacttcttattctactcttcaaattccccacctta-ct |
9806694 |
T |
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| Q |
322 |
ttggggaagagtcttcctcctc |
343 |
Q |
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| T |
9806693 |
ttcgggaatagtcttcctcctc |
9806672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 165; Significance: 3e-88; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 77 - 340
Target Start/End: Original strand, 11788 - 12052
Alignment:
| Q |
77 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatcaaaactttttc-cacannnnnnnatctagatc |
175 |
Q |
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| T |
11788 |
ttatctcttttgatggagttttcatgaaacttcaacctcgtttcattaattgggcataaaaggtaatcttaactttttttcacattgttttatctatata |
11887 |
T |
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| Q |
176 |
attttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtgataaatacatggattttattttaatttattat |
275 |
Q |
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| T |
11888 |
attttgcatgtctttatctgatttgtggttgtcttttatgtgagtgatttcaaacatcatactatgtaataaatacatgaattttattttattttattat |
11987 |
T |
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| Q |
276 |
ctacacatggatttctt-ttctactcttcaaattccccatcttacctttggggaagagtcttcctc |
340 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
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| T |
11988 |
gtacacatagatttcttattctactcttcaaattccccatctta-ctttagggaagagtcttcctc |
12052 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 74 - 226
Target Start/End: Complemental strand, 42778900 - 42778749
Alignment:
| Q |
74 |
tggttatctcttttgatggagttttcatgaaacttcaacctcgtttcattatttgggcaaaaaaggtaatcaaaactttttccacannnnnnnatctaga |
173 |
Q |
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|||||||||||||||| |||||||||||| || |||||||||||||||| | ||| ||||||||||||||| ||||||||| |||| ||||||| |
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| T |
42778900 |
tggttatctcttttgacggagttttcatgcaa-ttcaacctcgtttcatcaattgagcaaaaaaggtaatccaaacttttttcacatttctttatctaga |
42778802 |
T |
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| Q |
174 |
tcattttgcatgtctttctctgatttgtggttgtcttttatgtgagtgatttc |
226 |
Q |
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|||||||||| | |||||| ||||||||||||| ||||||| |||||| |||| |
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| T |
42778801 |
tcattttgcacgcctttctttgatttgtggttgccttttatatgagtggtttc |
42778749 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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