View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_16 (Length: 349)
Name: NF6665_low_16
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_16 |
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| [»] scaffold0565 (1 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 305; Significance: 1e-172; HSPs: 1)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 305; E-Value: 1e-172
Query Start/End: Original strand, 1 - 341
Target Start/End: Original strand, 9041 - 9380
Alignment:
| Q |
1 |
attttagaaatatcaaactctgtgttgctcatagagtcgtagctttgctggcatgttcaaagttgaagtagactattttgaagaagatttgtgtctatga |
100 |
Q |
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| T |
9041 |
attttagaaatatcaaactctgtgttgctcatagagtcatagctttgctagcatgttcaaagttgaagtagactattttgaagaagatttgtgtctatga |
9140 |
T |
|
| Q |
101 |
cgccaaattccaagttaccaccaacacgctgtacatattatcttgttggatgctcaacattatatttagtcatctggagctatttttgcttaatgttgta |
200 |
Q |
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| T |
9141 |
cgccaaattccaagttaccaccaacacgctgtacatattatcttcttgaatgctcaacattatatttagtcatctggagctatttttgcttaatgttgta |
9240 |
T |
|
| Q |
201 |
tatatctaatatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgatcaatatatgtgttaaattacactctg |
300 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9241 |
tataactaatatatggccaacttgtccattcagacaagttgatcaatatagtagctgatttttacggattcgatcaatttatgtgttaaattacactct- |
9339 |
T |
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| Q |
301 |
atacttaagataaaaataaataaattagccttgagtattat |
341 |
Q |
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||||||||||||||||||||||||| ||||||||||||||| |
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| T |
9340 |
atacttaagataaaaataaataaatcagccttgagtattat |
9380 |
T |
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