View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_2 (Length: 506)

Name: NF6665_low_2
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_2
NF6665_low_2
[»] chr1 (3 HSPs)
chr1 (11-473)||(18786939-18787402)
chr1 (142-174)||(27905427-27905459)
chr1 (199-303)||(36790063-36790167)
[»] chr2 (1 HSPs)
chr2 (199-278)||(31122773-31122852)
[»] chr3 (2 HSPs)
chr3 (142-171)||(9584090-9584119)
chr3 (142-171)||(33143986-33144015)
[»] chr8 (1 HSPs)
chr8 (139-171)||(17657039-17657071)
[»] chr5 (1 HSPs)
chr5 (142-201)||(28765609-28765668)
[»] chr4 (1 HSPs)
chr4 (150-201)||(39041281-39041332)


Alignment Details
Target: chr1 (Bit Score: 343; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 11 - 473
Target Start/End: Complemental strand, 18787402 - 18786939
Alignment:
Q  11 cttgtattttgttgagataa-cgcttttactttgagatcgagaattagtgtccagattcatgttttttcggttgattatggtgtcttccctgatggacca 109  Q
    |||| ||||||||||| | | ||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||||||||    
T  18787402 cttggattttgttgagttgatcgcttttacttcgagatcgagaattagtgtctagtttcatgttttttcggttgattatggtgtcttctctgatggacca 18787303  T
Q  110 gaaattaaggagtgtcttagtgatttcgcgtatggtggatcgatcacttttgattcgagatcagagtctgttttctagactcaagtttttggtagtggaa 209  Q
    |||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18787302 gaaactaaggagtgttttagtgatttcgcgtatggtggaccgatcacttttgattcgagatcagagtctgttttctagactcaaatttttggtagtggaa 18787203  T
Q  210 tctgaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatgggtttctgctcacagggttttgattagtttg 309  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||    
T  18787202 tctaaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatgggtatctgctcgcagggttttgattggtttg 18787103  T
Q  310 atggnnnnnnnatagaaatttttgtgagtagcgggtgacaacggtttagaatttgtgcatgtggccattcacaatgtcgtttgtgattttcgctcaagtt 409  Q
    ||||       ||||||||||||||||||| ||| |||||||||||| ||||||||||||||||||||||||||| || ||||||||||||||| |||||    
T  18787102 atggtttttttatagaaatttttgtgagtaccggatgacaacggtttggaatttgtgcatgtggccattcacaatatcctttgtgattttcgctgaagtt 18787003  T
Q  410 tgatttcgacgattatttgggggtttggttttgatttaggtgttgactttgatttcggtggtta 473  Q
    || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  18787002 tggtttcgacgattatttaggggtttggttttgatttaggtgttgactttgatttcggtggtta 18786939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 174
Target Start/End: Original strand, 27905427 - 27905459
Alignment:
Q  142 tggtggatcgatcacttttgattcgagatcaga 174  Q
    ||||||| |||||||||||||||||||||||||    
T  27905427 tggtggaccgatcacttttgattcgagatcaga 27905459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 199 - 303
Target Start/End: Original strand, 36790063 - 36790167
Alignment:
Q  199 tggtagtggaatctgaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatgggtttctgctcacagggttt 298  Q
    |||| ||||||| |||| ||||| | ||||| |  ||||||  ||||||||||||||| ||||||| ||||| |||||||    ||||||  ||||||||    
T  36790063 tggtggtggaatttgaaggagtgtttgaatatgtgattttcacgtgtttaattggactcagctatattgatgggaagatgatggtctgcttccagggttt 36790162  T
Q  299 tgatt 303  Q
    |||||    
T  36790163 tgatt 36790167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 199 - 278
Target Start/End: Complemental strand, 31122852 - 31122773
Alignment:
Q  199 tggtagtggaatctgaatgagtggtggaataagacattttcgggtgtttaattggacttagctatagtgatgagaagatg 278  Q
    |||| ||||||||||||| ||| |||||||| | |||||||| ||| ||||||| |||||| ||| |||| |||||||||    
T  31122852 tggtggtggaatctgaattagttgtggaatatgtcattttcgagtgcttaattgaacttagatatggtgacgagaagatg 31122773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 9584119 - 9584090
Alignment:
Q  142 tggtggatcgatcacttttgattcgagatc 171  Q
    ||||||||||||||||||||||||||||||    
T  9584119 tggtggatcgatcacttttgattcgagatc 9584090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 171
Target Start/End: Complemental strand, 33144015 - 33143986
Alignment:
Q  142 tggtggatcgatcacttttgattcgagatc 171  Q
    ||||||||||||||||||||||||||||||    
T  33144015 tggtggatcgatcacttttgattcgagatc 33143986  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 139 - 171
Target Start/End: Complemental strand, 17657071 - 17657039
Alignment:
Q  139 gtatggtggatcgatcacttttgattcgagatc 171  Q
    ||||||||| |||||||||||||||||||||||    
T  17657071 gtatggtgggtcgatcacttttgattcgagatc 17657039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 28765668 - 28765609
Alignment:
Q  142 tggtggatcgatcacttttgattcgagatc-agagtctgttttctagactcaagtttttgg 201  Q
    |||||||| ||||||||||||||||||||| |||||| | ||||| |||| ||||||||||    
T  28765668 tggtggattgatcacttttgattcgagatcgagagtcag-tttcttgacttaagtttttgg 28765609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 150 - 201
Target Start/End: Complemental strand, 39041332 - 39041281
Alignment:
Q  150 cgatcacttttgattcgagatca-gagtctgttttctagactcaagtttttgg 201  Q
    ||||||||||||||||||||||| ||||| | |||||||||||||||| ||||    
T  39041332 cgatcacttttgattcgagatcaggagtcag-tttctagactcaagttgttgg 39041281  T

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