View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_20 (Length: 309)

Name: NF6665_low_20
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_20
NF6665_low_20
[»] chr8 (6 HSPs)
chr8 (161-291)||(31547754-31547884)
chr8 (163-291)||(31877211-31877339)
chr8 (159-235)||(31544656-31544732)
chr8 (159-235)||(31559518-31559594)
chr8 (161-276)||(31556471-31556586)
chr8 (90-154)||(31877117-31877181)
[»] chr7 (2 HSPs)
chr7 (159-237)||(30034433-30034511)
chr7 (162-235)||(45868101-45868174)
[»] chr1 (2 HSPs)
chr1 (162-244)||(38624993-38625075)
chr1 (161-236)||(46613935-46614010)
[»] chr5 (3 HSPs)
chr5 (159-236)||(32361824-32361901)
chr5 (159-236)||(32379055-32379132)
chr5 (162-238)||(40640266-40640342)
[»] chr4 (3 HSPs)
chr4 (160-236)||(38507765-38507841)
chr4 (159-235)||(55290062-55290138)
chr4 (163-238)||(30161974-30162049)
[»] chr2 (6 HSPs)
chr2 (151-235)||(6493518-6493602)
chr2 (159-235)||(8328450-8328526)
chr2 (163-237)||(18229430-18229504)
chr2 (163-235)||(9596926-9596998)
chr2 (163-235)||(33994623-33994695)
chr2 (163-235)||(21281552-21281623)
[»] chr3 (2 HSPs)
chr3 (163-235)||(32053543-32053615)
chr3 (163-238)||(50683112-50683187)


Alignment Details
Target: chr8 (Bit Score: 119; Significance: 8e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 161 - 291
Target Start/End: Complemental strand, 31547884 - 31547754
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgatagttttgtgctgcttat 260  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  31547884 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgatagtttcgtgctgcttac 31547785  T
Q  261 taattgctttcgtgaattttagaatactttt 291  Q
    |||||||||| ||||||||||||||||||||    
T  31547784 taattgcttttgtgaattttagaatactttt 31547754  T

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Target: chr8; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 163 - 291
Target Start/End: Original strand, 31877211 - 31877339
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgatagttttgtgctgcttatta 262  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||    
T  31877211 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgatgatagtttggtgctgtttagta 31877310  T
Q  263 attgctttcgtgaattttagaatactttt 291  Q
    || ||||| ||||   |||||||||||||    
T  31877311 atggcttttgtgagacttagaatactttt 31877339  T

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Target: chr8; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 31544732 - 31544656
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31544732 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31544656  T

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Target: chr8; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Complemental strand, 31559594 - 31559518
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31559594 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 31559518  T

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Target: chr8; HSP #5
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 161 - 276
Target Start/End: Complemental strand, 31556586 - 31556471
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgatagttttgtgctgcttat 260  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| || ||||   ||||||||| ||      
T  31556586 aatgcggtgagcgtggatcaaacacgcgaccttcagatcttcaatctgacgctctcccaactgagctatccccgcatgatgattactttgtgctgatttg 31556487  T
Q  261 taattgctttcgtgaa 276  Q
    ||||||| ||||||||    
T  31556486 taattgcattcgtgaa 31556471  T

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Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 154
Target Start/End: Original strand, 31877117 - 31877181
Alignment:
Q  90 aaccaaatttattggcaatgcataagcaattattattccatatatacaggttttttaattaaaaa 154  Q
    |||||||||||  | ||||||||| | ||||||||| |||||||||||| |||| ||||||||||    
T  31877117 aaccaaatttaaagtcaatgcatatgtaattattataccatatatacagcttttataattaaaaa 31877181  T

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Target: chr7 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 159 - 237
Target Start/End: Original strand, 30034433 - 30034511
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30034433 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 30034511  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 162 - 235
Target Start/End: Original strand, 45868101 - 45868174
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45868101 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 45868174  T

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Target: chr1 (Bit Score: 79; Significance: 6e-37; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 38624993 - 38625075
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttggtgata 244  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  38624993 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttgttgata 38625075  T

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Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 161 - 236
Target Start/End: Complemental strand, 46614010 - 46613935
Alignment:
Q  161 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46614010 aatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 46613935  T

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Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32361824 - 32361901
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32361824 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32361901  T

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Target: chr5; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 159 - 236
Target Start/End: Original strand, 32379055 - 32379132
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32379055 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 32379132  T

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Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 40640266 - 40640342
Alignment:
Q  162 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttg 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40640266 atgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttg 40640342  T

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Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 160 - 236
Target Start/End: Original strand, 38507765 - 38507841
Alignment:
Q  160 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 236  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38507765 aaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgct 38507841  T

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Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 55290062 - 55290138
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  55290062 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 55290138  T

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Target: chr4; HSP #3
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 163 - 238
Target Start/End: Complemental strand, 30162049 - 30161974
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttg 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30162049 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttg 30161974  T

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Target: chr2 (Bit Score: 77; Significance: 1e-35; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 151 - 235
Target Start/End: Complemental strand, 6493602 - 6493518
Alignment:
Q  151 aaaatagtaaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6493602 aaaattgttaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 6493518  T

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Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 159 - 235
Target Start/End: Original strand, 8328450 - 8328526
Alignment:
Q  159 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8328450 aaaatgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 8328526  T

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Target: chr2; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 163 - 237
Target Start/End: Complemental strand, 18229504 - 18229430
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18229504 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgctt 18229430  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Complemental strand, 9596998 - 9596926
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9596998 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 9596926  T

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Target: chr2; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 33994623 - 33994695
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33994623 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 33994695  T

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Target: chr2; HSP #6
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 21281552 - 21281623
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||| |||||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||    
T  21281552 tgcggtgagcatggatcaaacacgcgaccttcggatcttca-tctgaggctctcccaactgagctatccccgc 21281623  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 163 - 235
Target Start/End: Original strand, 32053543 - 32053615
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32053543 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgc 32053615  T

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Target: chr3; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 50683112 - 50683187
Alignment:
Q  163 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatccccgcttg 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50683112 tgcggtgagcgtggatcgaacacgcgaccttcagatcttcagtctgacgctctcccaactgagctatcccagcttg 50683187  T

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