View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_3 (Length: 483)
Name: NF6665_low_3
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 14 - 468
Target Start/End: Original strand, 6389386 - 6389841
Alignment:
| Q |
14 |
ttctcctgacttgtataggtcgacatgaaaacgcaactgattagtaccgacctttcacacttgattagagagtttcttttctcacccttccggggaaaaa |
113 |
Q |
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| T |
6389386 |
ttctcctgacttgtataggtcgacatgaaaacgcaactgattagtaccgacctttcacacttgattagagagtttcttttctcacccttccggggaaaaa |
6389485 |
T |
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| Q |
114 |
cggtgtttttgccctcgaaaagcataattacaaacaaaaaatgaagnnnnnnnctcgtttgaaagtatacttccgaacacgtgtgtag-nnnnnnnnaga |
212 |
Q |
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| T |
6389486 |
cgatgtttttgccctcgaaaagcataattacaaacaaaaaatgaagtttttttctcgtttgaaagtatacttccgaacacatgtgtagtttttttttaga |
6389585 |
T |
|
| Q |
213 |
aaacatagcaccattcaattaaggcccatctggcccacatatgattagttgatgttcaattgcatattgattctattttgtgagattataatgttgataa |
312 |
Q |
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| T |
6389586 |
aaacatagcaccattcaattaaggcccatctggcccacatatgattagttgatgttcaattgtatattgattctattttgtgaggttataatgttgataa |
6389685 |
T |
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| Q |
313 |
ataatattgaattacaagtttaagataaacatgtgtaatcaagaannnnnnnnctattctccattcattcattgttgcctttaagccacatgttgatgaa |
412 |
Q |
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| T |
6389686 |
ataatattgaattacaagtttaagataaacatgtgtaatcaagagtttattttctattctccattcattcattgttgccttcaagccacatgttgatgaa |
6389785 |
T |
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| Q |
413 |
aaggaattatatatagtttgtctgatgtttgaagtatttgattgaaaagaataaag |
468 |
Q |
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| T |
6389786 |
aaggaattatatatagtttgtctgatgtttgaagtatttgattgaaaagaataaag |
6389841 |
T |
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