View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_33 (Length: 251)

Name: NF6665_low_33
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_33
NF6665_low_33
[»] chr1 (27 HSPs)
chr1 (55-235)||(11032268-11032447)
chr1 (1-217)||(35109432-35109645)
chr1 (20-148)||(32736909-32737037)
chr1 (20-142)||(918392-918515)
chr1 (1-146)||(10997016-10997159)
chr1 (1-66)||(11031368-11031433)
chr1 (46-143)||(3019791-3019888)
chr1 (20-113)||(17345432-17345525)
chr1 (19-115)||(22819518-22819614)
chr1 (20-148)||(8281374-8281502)
chr1 (53-144)||(9023785-9023876)
chr1 (20-86)||(32889558-32889624)
chr1 (21-74)||(6628910-6628963)
chr1 (58-115)||(8550883-8550941)
chr1 (51-144)||(37918719-37918810)
chr1 (20-175)||(47703848-47704004)
chr1 (64-116)||(8871143-8871197)
chr1 (58-144)||(16124466-16124553)
chr1 (58-115)||(19073017-19073075)
chr1 (58-115)||(19120907-19120965)
chr1 (20-108)||(25116615-25116702)
chr1 (57-116)||(34603589-34603649)
chr1 (20-115)||(40816729-40816822)
chr1 (58-116)||(37168311-37168370)
chr1 (58-116)||(41360928-41360987)
chr1 (67-144)||(48382441-48382518)
chr1 (59-116)||(7482326-7482384)
[»] chr8 (27 HSPs)
chr8 (20-175)||(9054750-9054905)
chr8 (1-144)||(7493068-7493210)
chr8 (21-174)||(3051150-3051303)
chr8 (20-129)||(5990474-5990583)
chr8 (43-146)||(8863562-8863664)
chr8 (43-158)||(6813729-6813845)
chr8 (20-129)||(34477135-34477241)
chr8 (46-144)||(11772001-11772098)
chr8 (20-144)||(14601223-14601347)
chr8 (22-121)||(33503755-33503855)
chr8 (20-115)||(42093092-42093188)
chr8 (20-148)||(31513245-31513367)
chr8 (1-115)||(5702375-5702491)
chr8 (20-116)||(28307649-28307746)
chr8 (58-115)||(30291620-30291679)
chr8 (20-86)||(19752306-19752372)
chr8 (58-158)||(6127267-6127368)
chr8 (36-121)||(37021020-37021105)
chr8 (58-165)||(23799527-23799635)
chr8 (58-115)||(40328793-40328851)
chr8 (58-115)||(41364943-41365001)
chr8 (56-115)||(11383997-11384057)
chr8 (58-116)||(19491794-19491853)
chr8 (82-127)||(28388061-28388106)
chr8 (99-144)||(33079743-33079788)
chr8 (58-115)||(3303766-3303824)
chr8 (46-117)||(37043658-37043731)
[»] chr2 (34 HSPs)
chr2 (20-230)||(28770687-28770896)
chr2 (20-226)||(2869605-2869812)
chr2 (40-158)||(18674334-18674452)
chr2 (20-144)||(15903803-15903926)
chr2 (86-226)||(16388449-16388589)
chr2 (19-175)||(27149206-27149362)
chr2 (20-144)||(35397572-35397694)
chr2 (48-163)||(27139843-27139958)
chr2 (40-145)||(12632605-12632709)
chr2 (20-121)||(3278084-3278184)
chr2 (25-109)||(40015020-40015104)
chr2 (40-153)||(5077782-5077896)
chr2 (1-175)||(8040089-8040266)
chr2 (20-107)||(41586464-41586549)
chr2 (20-115)||(2837943-2838038)
chr2 (58-144)||(20522280-20522367)
chr2 (58-116)||(11690515-11690574)
chr2 (20-115)||(14698922-14699016)
chr2 (58-116)||(42362366-42362425)
chr2 (56-116)||(723839-723900)
chr2 (20-158)||(8390062-8390201)
chr2 (58-115)||(10445394-10445452)
chr2 (20-144)||(10707165-10707289)
chr2 (58-129)||(11151673-11151745)
chr2 (58-115)||(39483020-39483078)
chr2 (58-116)||(14633921-14633980)
chr2 (58-158)||(21629989-21630090)
chr2 (58-116)||(24885675-24885734)
chr2 (20-115)||(31056133-31056227)
chr2 (58-116)||(34139866-34139925)
chr2 (36-92)||(1345470-1345525)
chr2 (20-175)||(13569357-13569513)
chr2 (58-115)||(14202501-14202559)
chr2 (54-115)||(26353193-26353256)
[»] scaffold0016 (1 HSPs)
scaffold0016 (20-148)||(102407-102535)
[»] chr4 (27 HSPs)
chr4 (20-156)||(34670578-34670711)
chr4 (49-144)||(37781922-37782017)
chr4 (20-144)||(18912276-18912400)
chr4 (1-175)||(39774200-39774373)
chr4 (20-116)||(5112325-5112421)
chr4 (21-141)||(39593791-39593910)
chr4 (20-144)||(1983214-1983337)
chr4 (36-144)||(4956239-4956352)
chr4 (49-144)||(8114680-8114774)
chr4 (20-158)||(873431-873569)
chr4 (20-175)||(18377388-18377543)
chr4 (22-129)||(42234286-42234390)
chr4 (58-175)||(16623243-16623361)
chr4 (20-132)||(36175180-36175290)
chr4 (59-175)||(36315181-36315297)
chr4 (59-175)||(36329390-36329506)
chr4 (1-144)||(3777609-3777751)
chr4 (56-129)||(5871832-5871906)
chr4 (1-115)||(25861928-25862041)
chr4 (58-115)||(31474164-31474223)
chr4 (58-144)||(10047439-10047526)
chr4 (58-115)||(42599523-42599581)
chr4 (58-92)||(45687303-45687337)
chr4 (58-116)||(379394-379453)
chr4 (58-158)||(3796469-3796570)
chr4 (59-175)||(5396623-5396739)
chr4 (60-115)||(5269154-5269210)
[»] chr5 (21 HSPs)
chr5 (21-116)||(33030854-33030949)
chr5 (1-144)||(2630291-2630433)
chr5 (20-171)||(6741885-6742036)
chr5 (20-129)||(7160817-7160925)
chr5 (20-144)||(11181745-11181869)
chr5 (22-158)||(34842649-34842785)
chr5 (57-148)||(5611198-5611289)
chr5 (46-91)||(3651613-3651658)
chr5 (37-138)||(30899933-30900034)
chr5 (20-158)||(10281797-10281936)
chr5 (2-158)||(12084072-12084226)
chr5 (19-129)||(31336153-31336262)
chr5 (20-115)||(42127323-42127419)
chr5 (56-116)||(33831692-33831753)
chr5 (1-158)||(3880345-3880502)
chr5 (20-75)||(28832386-28832441)
chr5 (20-86)||(31300508-31300574)
chr5 (58-116)||(3075753-3075812)
chr5 (58-116)||(8566041-8566100)
chr5 (58-116)||(31182986-31183045)
chr5 (56-95)||(19806395-19806432)
[»] chr3 (38 HSPs)
chr3 (41-175)||(4386851-4386985)
chr3 (40-143)||(29100220-29100324)
chr3 (42-148)||(5366249-5366355)
chr3 (38-117)||(25517069-25517148)
chr3 (38-140)||(5797204-5797305)
chr3 (20-144)||(21353622-21353746)
chr3 (20-115)||(3328259-3328355)
chr3 (57-148)||(21156485-21156576)
chr3 (20-175)||(8370390-8370544)
chr3 (20-115)||(1417393-1417489)
chr3 (20-144)||(35925540-35925663)
chr3 (59-175)||(21711252-21711368)
chr3 (20-144)||(36029153-36029278)
chr3 (46-129)||(41163174-41163258)
chr3 (56-115)||(9666562-9666623)
chr3 (20-144)||(18552787-18552910)
chr3 (58-115)||(24695104-24695162)
chr3 (20-144)||(40844711-40844834)
chr3 (58-116)||(22835097-22835156)
chr3 (20-115)||(25795870-25795964)
chr3 (20-145)||(44658396-44658521)
chr3 (58-115)||(32891117-32891176)
chr3 (20-115)||(40592684-40592780)
chr3 (20-87)||(25929299-25929365)
chr3 (58-126)||(44700563-44700632)
chr3 (58-115)||(3715942-3716000)
chr3 (58-115)||(26299077-26299135)
chr3 (58-92)||(29196507-29196541)
chr3 (57-115)||(32744532-32744590)
chr3 (58-116)||(760861-760920)
chr3 (64-126)||(5433961-5434025)
chr3 (58-116)||(46860488-46860547)
chr3 (20-115)||(3323593-3323689)
chr3 (20-115)||(8126719-8126814)
chr3 (59-116)||(9581297-9581355)
chr3 (48-76)||(37387546-37387574)
chr3 (58-115)||(39153457-39153515)
chr3 (58-115)||(47923845-47923904)
[»] chr7 (22 HSPs)
chr7 (54-226)||(28617172-28617344)
chr7 (1-175)||(5817165-5817337)
chr7 (20-115)||(23402926-23403022)
chr7 (36-115)||(3047344-3047422)
chr7 (20-158)||(29159849-29159989)
chr7 (20-115)||(20284177-20284273)
chr7 (58-115)||(24525992-24526051)
chr7 (50-117)||(761261-761328)
chr7 (20-144)||(2647610-2647733)
chr7 (50-144)||(4162712-4162805)
chr7 (20-89)||(45685658-45685727)
chr7 (20-115)||(9235495-9235591)
chr7 (58-144)||(56007-56094)
chr7 (58-144)||(46516260-46516347)
chr7 (20-86)||(2580508-2580574)
chr7 (20-86)||(9185087-9185153)
chr7 (20-86)||(9189920-9189986)
chr7 (58-116)||(8359412-8359471)
chr7 (57-115)||(23565157-23565217)
chr7 (64-126)||(36574601-36574665)
chr7 (56-116)||(41649106-41649166)
chr7 (20-115)||(33332363-33332458)
[»] chr6 (19 HSPs)
chr6 (37-148)||(30518058-30518169)
chr6 (41-148)||(33721493-33721600)
chr6 (36-144)||(1115033-1115141)
chr6 (20-92)||(14521785-14521857)
chr6 (1-115)||(99245-99357)
chr6 (58-117)||(16569047-16569108)
chr6 (20-86)||(31936695-31936761)
chr6 (20-144)||(31076849-31076978)
chr6 (58-144)||(10077115-10077202)
chr6 (20-115)||(31979602-31979697)
chr6 (20-128)||(33690738-33690846)
chr6 (56-116)||(22424922-22424983)
chr6 (58-144)||(31086423-31086510)
chr6 (21-127)||(31418929-31419035)
chr6 (58-115)||(5017430-5017488)
chr6 (20-144)||(5572155-5572278)
chr6 (58-116)||(2973034-2973093)
chr6 (58-116)||(28137503-28137562)
chr6 (58-111)||(16567210-16567265)
[»] scaffold0002 (1 HSPs)
scaffold0002 (37-138)||(14748-14849)
[»] scaffold0076 (1 HSPs)
scaffold0076 (56-144)||(15937-16025)
[»] scaffold0078 (1 HSPs)
scaffold0078 (20-114)||(23622-23715)
[»] scaffold1444 (1 HSPs)
scaffold1444 (50-121)||(1258-1329)
[»] scaffold0036 (1 HSPs)
scaffold0036 (58-144)||(85743-85829)
[»] scaffold0176 (1 HSPs)
scaffold0176 (20-115)||(17352-17446)


Alignment Details
Target: chr1 (Bit Score: 145; Significance: 2e-76; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 55 - 235
Target Start/End: Original strand, 11032268 - 11032447
Alignment:
Q  55 tgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctg 154  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  11032268 tgaaaaatgggtagaaattatgttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagttg 11032367  T
Q  155 ctctatcctccggagtaggtcccttttggaccaaactacgcaaacaatattggtgtcttgttttcttccttttcttactta 235  Q
    |||||||||||| ||||||||| ||||||| | ||||||| ||||||||||||||| ||||||||||||||||||||||||    
T  11032368 ctctatcctccgaagtaggtcctttttgga-cgaactacgtaaacaatattggtgtattgttttcttccttttcttactta 11032447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 35109432 - 35109645
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| ||||||||| ||| ||||||  |||||||||||| |||||||||||| ||||||||||||| | ||||||||||||||| ||||||     
T  35109432 aaaaagcttcctttagtatttt-ctcgtaggattcattgtgagtgtgtgtgacttgaaaattgggtagaaattaaggtttgttctttgtgagcttttaag 35109530  T
Q  101 ctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtcccttttggaccaaactacgcaaaca 200  Q
    ||||||||||||||||| ||| ||||  | |||||||||||||||||| ||||  ||| |||| | || ||||| | ||||||||||||||  | |||||    
T  35109531 ctaatttcttgtaacctatttgtatctatcttatcatagtggatcagagagcttgtctctcct-cagattaggt-cattttggaccaaactgagtaaaca 35109628  T
Q  201 atattggtgtcttgttt 217  Q
    |||| ||||| ||||||    
T  35109629 atatcggtgtgttgttt 35109645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 32736909 - 32737037
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||||||||||   ||||||||||||||||||||||||||| |||||||||| |||  |||||| ||||||| |||||||||||    
T  32736909 ttttctcttaggattcattgtgagtgtcgatgacttgaaaaatgggtagaaattagggtttgttctttatgaacttttaagctaattttttgtaacctct 32737008  T
Q  120 ttatatcactattatcatagtggatcaga 148  Q
    || ||||||  | |||||||| |||||||    
T  32737009 ttgtatcaccttcatcatagttgatcaga 32737037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 20 - 142
Target Start/End: Original strand, 918392 - 918515
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtg-acttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||||| || |||||| | ||||||||||||||||||||| | |||||||||||||||||| |||  |||||||||||||  ||    
T  918392 ttttctcttaggattcattgtgggtttgagtggaattgaaaaatgggtagaaattatggtttgttctttgtgagtttgtaagataatttcttgtaatatc 918491  T
Q  119 tttatatcactattatcatagtgg 142  Q
    ||| ||||||| ||||||||||||    
T  918492 tttgtatcactcttatcatagtgg 918515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 10997159 - 10997016
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| |||| ||||||| |||||||  |  ||||||| | |||||||||||||||||||||||||||| |||||| ||||| |  ||||||     
T  10997159 aaaaagcttcctttagtgtttttcttttaggattcaacgtgagtgagggtgacttgaaaaatgggtagaaattagggtttgttatttgttatcttttaag 10997060  T
Q  101 ctaatttcttgtaacctctttatatcactattatcatagtggatca 146  Q
     |||||||||||||| | ||| ||||||| ||||  ||||||||||    
T  10997059 ttaatttcttgtaacatatttgtatcactcttat--tagtggatca 10997016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 11031368 - 11031433
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggt 66  Q
    |||||||||||| |||| |||||||||||||||| ||||||||||||| |||||||||||||||||    
T  11031368 aaaaagcttcctttagtgtttttctcttaggatacattgtgagtgtgaatgacttgaaaaatgggt 11031433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 46 - 143
Target Start/End: Complemental strand, 3019888 - 3019791
Alignment:
Q  46 tgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtgga 143  Q
    ||||||||||||||||| ||||||||||||    |||||||||||||||| ||| | |||||||| |||||||||  ||||||  |||||||||||||    
T  3019888 tgagtgacttgaaaaattggtagaaattagaaaatgttctttgtgagtttgtaagcaaatttcttataacctcttcgtatcacgtttatcatagtgga 3019791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 113
Target Start/End: Original strand, 17345432 - 17345525
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgta 113  Q
    |||||||||| |||  |||  ||||||| ||||||| |||||||||||||||||||||||||||||||||| | | |||  |||||||||||||    
T  17345432 ttttctcttaagattcattaagagtgtgggtgacttaaaaaatgggtagaaattaggttttgttctttgtgggctcttatgctaatttcttgta 17345525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 19 - 115
Target Start/End: Complemental strand, 22819614 - 22819518
Alignment:
Q  19 tttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||  |||| ||||||| |||||||||||||||| ||||||||| || || ||||||||||| |   || |||||||||||||||    
T  22819614 tttttctcttaggattcattgagagtgtgggtgacttgaaaaatggttagaaattatgtcttattctttgtgagctaaaaagctaatttcttgtaac 22819518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 148
Target Start/End: Complemental strand, 8281502 - 8281374
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||| ||||  |||||||||| | ||||||| || ||| | ||||||||||  |||||||||||||||   |||   |||||||||||||| | |    
T  8281502 ttttctctttggattcattgtgagtgcgggtgacttaaataattgatagaaattagaatttgttctttgtgagcgattatgttaatttcttgtaacatat 8281403  T
Q  120 ttatatcactattatcatagtggatcaga 148  Q
    || ||||| | ||||||||||||||||||    
T  8281402 ttgtatcattcttatcatagtggatcaga 8281374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 53 - 144
Target Start/End: Original strand, 9023785 - 9023876
Alignment:
Q  53 cttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||| |||||||||||||||| || ||||||||||| |||||  ||||||| ||||| ||  ||| ||||||| | ||| ||||||||    
T  9023785 cttgaaaagtgggtagaaattaggtcttattctttgtgagcttttatgctaatttattgtatcccatttgtatcactttcatcttagtggat 9023876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 32889624 - 32889558
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||||||||||||||||||  ||||||||    
T  32889624 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 32889558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 74
Target Start/End: Complemental strand, 6628963 - 6628910
Alignment:
Q  21 tttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaatta 74  Q
    ||||||||||||| |||||||| | ||| |||||||||||||| ||||||||||    
T  6628963 tttctcttaggatctattgtgactttgaatgacttgaaaaatgagtagaaatta 6628910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 8550941 - 8550883
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||    
T  8550941 aaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaac 8550883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 144
Target Start/End: Complemental strand, 37918810 - 37918719
Alignment:
Q  51 gacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcac-tattatcatagtggat 144  Q
    |||||||||||| ||||||| |||||    ||||||| |||| ||  |||||||||||||||||| ||||| |||||| |||| |||||||||||    
T  37918810 gacttgaaaaataggtagaatttaggg---gttctttatgagcttgaaatctaatttcttgtaacatctttgtatcacttattttcatagtggat 37918719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 47703848 - 47704004
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| ||||||||||||||      
T  47703848 ttttctcttaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaatt 47703945  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
      ||| || |||| | ||||||||||||  || ||||||||| ||| || || ||||||    
T  47703946 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtc 47704004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 64 - 116
Target Start/End: Complemental strand, 8871197 - 8871143
Alignment:
Q  64 ggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaacc 116  Q
    ||||||||||||| |||||||||||||||||  || || ||||||||||||||||    
T  8871197 ggtagaaattagggtttgttctttgtgagttcgttgaagctaatttcttgtaacc 8871143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 16124466 - 16124553
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||    
T  16124466 aaaatgggtagaaattaggtcttgttcttatgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggat 16124553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 19073075 - 19073017
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  19073075 aaaatgggtagaaattaggtattgttcttttgtaagcttataagctaatttcttgtaac 19073017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 19120965 - 19120907
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  19120965 aaaatgggtagaaattaggtattgttcttttgtaagcttataagctaatttcttgtaac 19120907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 108
Target Start/End: Original strand, 25116615 - 25116702
Alignment:
Q  20 ttttctcttaggatatattg-tgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttc 108  Q
    |||||||||| ||| ||||  ||||||||  |||||||||||  ||||| ||||||||  || |||||||||||||||||| ||||||||    
T  25116615 ttttctcttaagatttatttatgagtgtggatgacttgaaaa--gggtaaaaattaggggttcttctttgtgagtttttaagctaatttc 25116702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 116
Target Start/End: Original strand, 34603589 - 34603649
Alignment:
Q  57 aaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  34603589 aaaaatgggtagaaattagg-gttgttctttgtgagcttgtttaagctaatttcttgtaacc 34603649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40816729 - 40816822
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| |||||   | ||||| ||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  40816729 ttttctcttaggattcattgagagtgtgggtgac---acaaatgagtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaac 40816822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 37168311 - 37168370
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  37168311 aaaatgggtagaaattagg-gttgttctttgtgagcttgtttaagctaatttcttgtaacc 37168370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 41360928 - 41360987
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | || || ||||||||||||||||    
T  41360928 aaaatgggtagaaattagg-tttgttctttgtgagcttgttgaaactaatttcttgtaacc 41360987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 144
Target Start/End: Original strand, 48382441 - 48382518
Alignment:
Q  67 agaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||| |||| |||||||||  || |||  |||||||||||||||| ||| ||||||| | |||||| |||||    
T  48382441 agaaattagggtttgatctttgtgaacttgtaagttaatttcttgtaacctatttgtatcactttcatcatattggat 48382518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Complemental strand, 7482384 - 7482326
Alignment:
Q  59 aaatgggtagaaattaggttttgttctttgtgagttt--ttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||| || |||||||||||| ||  |||| ||||||||||||||||    
T  7482384 aaatgggtagaaattagggtt-gttctttgtgagcttgtttaagctaatttcttgtaacc 7482326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 9e-45; HSPs: 27)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 9054750 - 9054905
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||| ||||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| |||||||||||||||| ||    
T  9054750 ttttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattagattttgttctttgtgcgcttttaagctaatttcttgtaaccact 9054849  T
Q  120 ttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    || ||||||| | ||| |||||||| ||| ||||||||| |||||| |||||||||    
T  9054850 ttgtatcactttcatcttagtggattagagagctgctctctcctccagagtaggtc 9054905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 7493068 - 7493210
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| |||| ||||| ||||||||| ||||| ||||||| |||||||||||||  |||||||||||||||||||||| |||||| |||||      
T  7493068 aaaaagcttcctttagtgttttt-tcttaggatttattgagagtgtgggtgacttgaaaaacaggtagaaattaggttttgttctgtgtgagcttttatg 7493166  T
Q  101 ctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
     ||||||||| |||| ||||| ||||||| | ||| ||||||||    
T  7493167 ttaatttcttataacttctttgtatcactttcatcttagtggat 7493210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 21 - 174
Target Start/End: Complemental strand, 3051303 - 3051150
Alignment:
Q  21 tttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctt 120  Q
    |||||||||||||  |||| |||||| |||||| |||||||||||||||||||| ||||||||||||||||| | |||  |||||||||||||||   ||    
T  3051303 tttctcttaggattcattgagagtgtaagtgacatgaaaaatgggtagaaattaagttttgttctttgtgagctcttatgctaatttcttgtaactcatt 3051204  T
Q  121 tatatcactattatcatagtggatcagatagctgctctatcctccggagtaggt 174  Q
    | ||||||| | ||| ||||||||  || || |||||| |||||| ||| ||||    
T  3051203 tgtatcactttcatcttagtggattggagaggtgctctctcctccagaggaggt 3051150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 5990474 - 5990583
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  ||||  |||||| ||||||||||||||||||  |||| ||||  ||||||||||||| |||||| ||||||||||||||| |||    
T  5990474 ttttctcttaggattcattgaaagtgtgggtgacttgaaaaatgggtgaaaatgaggtcgtgttctttgtgagcttttaagctaatttcttgtaacatct 5990573  T
Q  120 ttatatcact 129  Q
    || |||||||    
T  5990574 ttgtatcact 5990583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 146
Target Start/End: Original strand, 8863562 - 8863664
Alignment:
Q  43 gtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcact-attatcatagtg 141  Q
    |||||||||||||||||||||||||||||||| | |||||||  |||||| ||||||  |||||||||||||||||||| |||||||  || ||||||||    
T  8863562 gtgtgagtgacttgaaaaatgggtagaaattaaggtttgttc--tgtgagcttttaagttaatttcttgtaacctctttgtatcactctttctcatagtg 8863659  T
Q  142 gatca 146  Q
    |||||    
T  8863660 gatca 8863664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 43 - 158
Target Start/End: Complemental strand, 6813845 - 6813729
Alignment:
Q  43 gtgtgagtgacttgaaaaatgggtagaaa-ttaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtg 141  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||| ||  || |||||||||||||||| |||| | ||||| | ||| || ||    
T  6813845 gtgtgagtgacttgaaaaatgggtagaaaattaggttttgttctttgtgagcttgcaagctaatttcttgtaacccctttgtgtcactttcatcttattg 6813746  T
Q  142 gatcagatagctgctct 158  Q
    |||  || |||||||||    
T  6813745 gattggagagctgctct 6813729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 34477135 - 34477241
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||| ||||  ||||||  | ||||||||||||||||||||| ||||||||   ||||||||||||||||| |||  ||||||||| ||||||||    
T  34477135 ttttctctttggattcattgtggatttgagtgacttgaaaaatgggtcgaaattag---ttgttctttgtgagtttgtaagttaatttcttttaacctct 34477231  T
Q  120 ttatatcact 129  Q
    || |||||||    
T  34477232 ttgtatcact 34477241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 144
Target Start/End: Complemental strand, 11772098 - 11772001
Alignment:
Q  46 tgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||| ||||| | |||||| | ||||||||||||  || ||| |||||||||| |||||||||| ||||||| ||||||||||||||    
T  11772098 tgagtgacttgaaaaaagggta-atattaggatatgttctttgtgaacttgtaaactaatttcttttaacctctttgtatcactcttatcatagtggat 11772001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 14601347 - 14601223
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||| ||||||  || ||| || ||||||||||||||||| |||| |||||||| |  |||||||||| | || ||  |||||||| ||||||||||    
T  14601347 ttttctcataggattcatcgtgcgtttgagtgacttgaaaaataggtaaaaattaggatacgttctttgtgggcttatacgctaatttcgtgtaacctct 14601248  T
Q  120 ttatatcactattatcatagtggat 144  Q
    || ||||| ||||||  ||||||||    
T  14601247 ttgtatcattattattgtagtggat 14601223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 121
Target Start/End: Original strand, 33503755 - 33503855
Alignment:
Q  22 ttctcttaggatatat-tgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctt 120  Q
    |||||||||||| | | |||| || |||||||||||||||||||||||||||||||| |||| ||||| | | || | | |||||||||| |||||||||    
T  33503755 ttctcttaggatctctatgtgggtttgagtgacttgaaaaatgggtagaaattaggtattgtgctttgagggcttgtgagctaatttcttttaacctctt 33503854  T
Q  121 t 121  Q
    |    
T  33503855 t 33503855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 42093092 - 42093188
Alignment:
Q  20 ttttctcttaggatatattgtga-gtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||   ||||||| || | ||| ||||||||||| ||||||||||| | | |||||||||||||||| ||| |||||||||||||||    
T  42093092 ttttctcttaggaatcattgtgaagtctaagtaacttgaaaaataggtagaaattatgatatgttctttgtgagtttgtaagctaatttcttgtaac 42093188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 31513245 - 31513367
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  ||||||||||||  ||||| | ||||| ||||||||||||| ||||||||||||||     ||| ||||||| |||||||||||    
T  31513245 ttttctcttaggattcattgtgagtgtggatgactcg-aaaataggtagaaattagg-tttgttctttgtga----ataagctaattttttgtaacctct 31513338  T
Q  120 ttatatcactattatcatagtggatcaga 148  Q
    ||  || | | ||||||||||||||||||    
T  31513339 tttcataattcttatcatagtggatcaga 31513367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 5702375 - 5702491
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggata---tattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttt 96  Q
    |||||||||||| | || |||||||||||||||    ||||| ||||||| ||||||   |||||||||||||||||||||||| |||| ||| || ||     
T  5702375 aaaaagcttccttttgtgtttttctcttaggattcattattgagagtgtgggtgactc--aaaatgggtagaaattaggttttgctcttgtgtaagctta 5702472  T
Q  97 taatctaatttcttgtaac 115  Q
    ||| |||||||||||||||    
T  5702473 taagctaatttcttgtaac 5702491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 28307746 - 28307649
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat-ctaatttcttgtaacc 116  Q
    |||||| |||||||  | || ||||||| ||||||||| ||||| ||||||| ||||| ||||||||| |||| ||||||  ||||||||||||||||    
T  28307746 ttttcttttaggattcagtgagagtgtgggtgacttgagaaatgtgtagaaagtaggtcttgttctttatgagcttttaaaactaatttcttgtaacc 28307649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 30291620 - 30291679
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||||||||||||||||||  | || || |||||||||||||||    
T  30291620 aaaatgggtagaaattaggttttgttctttgtgagcttgttgaagctaatttcttgtaac 30291679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 19752306 - 19752372
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||||||||||||||||||  ||||||||    
T  19752306 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 19752372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 6127368 - 6127267
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgct 156  Q
    |||||||||||||||||||| |||||| ||||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||  || |||||||    
T  6127368 aaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgct 6127269  T
Q  157 ct 158  Q
    ||    
T  6127268 ct 6127267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 37021105 - 37021020
Alignment:
Q  36 attgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctcttt 121  Q
    ||||||||| ||| |||||||| |||  ||||||||||| | ||| ||||| ||||| || | ||||||||||||||| |||||||    
T  37021105 attgtgagtttgactgacttgacaaaatggtagaaattatggtttattcttcgtgagattgtgatctaatttcttgtatcctcttt 37021020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 165
Target Start/End: Original strand, 23799527 - 23799635
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgct 156  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||  ||  ||||||    
T  23799527 aaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagggctgct 23799626  T
Q  157 ctatcctcc 165  Q
    || ||||||    
T  23799627 ctctcctcc 23799635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 40328793 - 40328851
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||||| |||||||||||||||  | ||||| |||||||||||||||    
T  40328793 aaaatgggtagaaattagg-tttgttctttgtgagcttgtttaaactaatttcttgtaac 40328851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 41365001 - 41364943
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaac 115  Q
    ||||| |||||||||||||||| ||||||||||||||  ||||| |||||||||||||||    
T  41365001 aaaattggtagaaattaggttt-gttctttgtgagtttgtttaagctaatttcttgtaac 41364943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 115
Target Start/End: Original strand, 11383997 - 11384057
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||||  ||||||||||||||||  || || |||||||||||||||    
T  11383997 gaaaaatgggtagaaattagg-gttgttctttgtgagtttgttgaagctaatttcttgtaac 11384057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 19491853 - 19491794
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | || || ||||||||||||||||    
T  19491853 aaaatgggtagaaattagg-tttgttctttgtgagcttgttgaaactaatttcttgtaacc 19491794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 82 - 127
Target Start/End: Complemental strand, 28388106 - 28388061
Alignment:
Q  82 ttctttgtgagtttttaatctaatttcttgtaacctctttatatca 127  Q
    ||||||||||||||   ||||||||||||||||||||||| |||||    
T  28388106 ttctttgtgagtttgagatctaatttcttgtaacctctttgtatca 28388061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 33079788 - 33079743
Alignment:
Q  99 atctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| || |||||||| | |||||||||||    
T  33079788 atctaatttcttgtaacctccttgtatcactaatttcatagtggat 33079743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 3303824 - 3303766
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||| | |||||||||||||||  | ||||| |||||||||||||||    
T  3303824 aaaatgggtagaaattaag-tttgttctttgtgagcttgtttaacctaatttcttgtaac 3303766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 117
Target Start/End: Complemental strand, 37043731 - 37043658
Alignment:
Q  46 tgagtgacttgaaaaatgggtagaaatta---ggttttgttctttgtgagtttttaatctaatttcttgtaacct 117  Q
    |||||||||||||||||||||| ||||||   || ||||||||||||||| ||   ||||||||||||| |||||    
T  37043731 tgagtgacttgaaaaatgggta-aaattaactgggtttgttctttgtgagcttgagatctaatttcttgcaacct 37043658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 34)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 20 - 230
Target Start/End: Original strand, 28770687 - 28770896
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||| |||||||  ||||||||||||||||||||||||||  ||||||||||||||| |||||| ||||||||||||||  |||    
T  28770687 ttttctcttaggattcattgcgagtgtgtatgacttgaaaaatgggtagaaattagagtttgttctttgtgagcttttaagctaatttcttgtaatatct 28770786  T
Q  120 ttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtcccttttggaccaaactacgcaaacaatattggtgtcttgttttc 219  Q
    || ||||| | ||||| ||| ||||| || |||||||||||||||| |||||||||  |||| ||||  | || | ||| |||||||||||||||||| |    
T  28770787 ttgtatcattcttatcgtagaggatcggagagctgctctatcctccagagtaggtcatttttagaccgta-taggtaaaaaatattggtgtcttgtttcc 28770885  T
Q  220 ttccttttctt 230  Q
    || || |||||    
T  28770886 tttctcttctt 28770896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 20 - 226
Target Start/End: Original strand, 2869605 - 2869812
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattagg-ttttgttctttgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||| ||||||| |||||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||  |    
T  2869605 ttttctcttaggattcattgagagtgtgggtgacttgaaaaatgggtagaaattaggtttttgttctttgtgagcttttaagctaatttcttgtaactcc 2869704  T
Q  119 tttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtcccttttggaccaaactacgcaaacaatattggtgt-cttgttt 217  Q
    ||| ||||||| | ||| ||||||||  || |||| |||| ||| |  |||||||| | | ||||||| ||||  | |||||||||||||||  |||||     
T  2869705 tttgtatcactttcatcttagtggattggagagctactctctcccctagagtaggt-catattggaccgaactgggtaaacaatattggtgtgtttgttc 2869803  T
Q  218 tcttccttt 226  Q
    |||||||||    
T  2869804 tcttccttt 2869812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 40 - 158
Target Start/End: Original strand, 18674334 - 18674452
Alignment:
Q  40 tgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatag 139  Q
    |||||||| |||||||||||||||| ||||||||| | ||||||||||||||| |||||| |||||||||||||||| |||  ||||||| || ||||||    
T  18674334 tgagtgtgggtgacttgaaaaatggatagaaattatggtttgttctttgtgagcttttaaactaatttcttgtaaccccttggtatcactcttgtcatag 18674433  T
Q  140 tggatcagatagctgctct 158  Q
    | |||| || |||||||||    
T  18674434 tagatcggagagctgctct 18674452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 15903803 - 15903926
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||| ||||||  |||| ||||||| |||||||||||||||||||||||||||  ||||||||||||||| || ||| || ||||||||||||| ||    
T  15903803 ttttctcataggattcattgagagtgtgggtgacttgaaaaatgggtagaaattagaatttgttctttgtgagcttgtaagct-atttcttgtaacccct 15903901  T
Q  120 ttatatcactattatcatagtggat 144  Q
    || ||||||| ||||| ||||||||    
T  15903902 ttgtatcacttttatcttagtggat 15903926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 226
Target Start/End: Original strand, 16388449 - 16388589
Alignment:
Q  86 ttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtcccttttggac 185  Q
    ||||||| |||||| ||||||||||||||||||||| |||| || |||||| ||||||   || ||||||||| |||||  |||||||||  ||||||||    
T  16388449 ttgtgagcttttaagctaatttcttgtaacctctttctatctctcttatcaaagtggaaaggagagctgctctctcctctagagtaggtcatttttggac 16388548  T
Q  186 caaactacgcaaacaatattggtgtcttgttttcttccttt 226  Q
    ||||||  | ||||||||||||||| |||||||| ||||||    
T  16388549 caaactgggtaaacaatattggtgtgttgttttcctccttt 16388589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 19 - 175
Target Start/End: Original strand, 27149206 - 27149362
Alignment:
Q  19 tttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctc 118  Q
    |||||||||||||||  |||||||||||| ||||||| |||||  ||||||| ||| || |||||||||||||| ||||||  ||||||||||| ||| |    
T  27149206 tttttctcttaggattcattgtgagtgtgggtgacttaaaaaacaggtagaagttaagtcttgttctttgtgagcttttaaggtaatttcttgttacccc 27149305  T
Q  119 tttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    ||| ||||||| | || |||||||||  || ||||||||| ||| ||  ||||||||    
T  27149306 tttgtatcactttcattatagtggattggagagctgctctctcccccatagtaggtc 27149362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 35397694 - 35397572
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||| || |||| |||||||||||||||| ||||||||||| |||||||||| |||  |||||| ||||||| | |||||||||    
T  35397694 ttttctcttaggattcattgagattgtgggtgacttgaaaaatggatagaaattagg-tttgttctttatgaccttttaagctaattt-tcgtaacctct 35397597  T
Q  120 ttatatcactattatcatagtggat 144  Q
    |||||||||| | ||| ||||||||    
T  35397596 ttatatcactttcatcttagtggat 35397572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 163
Target Start/End: Complemental strand, 27139958 - 27139843
Alignment:
Q  48 agtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcag 147  Q
    |||||||||||| ||| |||||||||||| ||||| ||||||||| ||| ||| ||||||| |||||| | ||| |||||||||| |||||||| ||  |    
T  27139958 agtgacttgaaatatgtgtagaaattagggtttgtactttgtgagctttaaatttaatttcctgtaacatttttgtatcactattttcatagtgaattgg 27139859  T
Q  148 atagctgctctatcct 163  Q
    | ||||||||| ||||    
T  27139858 agagctgctctctcct 27139843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 40 - 145
Target Start/End: Complemental strand, 12632709 - 12632605
Alignment:
Q  40 tgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcact-attatcata 138  Q
    |||||||| |||||||||||||||| ||||| ||||| ||||||||| |||||  | ||| |||||||||| |||||||||| || ||||  ||||||||    
T  12632709 tgagtgtgggtgacttgaaaaatggatagaagttagggtttgttcttggtgag--tctaaactaatttcttttaacctctttgtaccactctttatcata 12632612  T
Q  139 gtggatc 145  Q
    |||||||    
T  12632611 gtggatc 12632605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 121
Target Start/End: Complemental strand, 3278184 - 3278084
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    |||||||||||| |  ||||||||||||||||| |||||||||| | ||||||  |  ||||||| ||||||| |||||| |||||||||| ||||||||    
T  3278184 ttttctcttagggttcattgtgagtgtgagtgaattgaaaaatgagaagaaatcggaatttgttc-ttgtgaggttttaagctaatttcttataacctct 3278086  T
Q  120 tt 121  Q
    ||    
T  3278085 tt 3278084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 40015104 - 40015020
Alignment:
Q  25 tcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttct 109  Q
    ||||||||| ||||| ||||||| ||||| |||||| || ||||||||||||| |||||| ||||||||||||||| |||||||||    
T  40015104 tcttaggatttattgagagtgtgggtgacatgaaaa-tgagtagaaattaggtcttgttcttttgtgagtttttaagctaatttct 40015020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 40 - 153
Target Start/End: Complemental strand, 5077896 - 5077782
Alignment:
Q  40 tgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagttttta-atctaatttcttgtaacctctttatatcactattatcata 138  Q
    ||||| |||||||||| | ||||  |||||||||  | |||||||||||| || ||| | || ||||||||||||||| |||| ||||||| ||||||||    
T  5077896 tgagtctgagtgacttaataaataagtagaaattcagatttgttctttgtaagctttaagatataatttcttgtaaccactttgtatcactcttatcata 5077797  T
Q  139 gtggatcagatagct 153  Q
    ||||||  |||||||    
T  5077796 gtggattggatagct 5077782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 8040266 - 8040089
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagttttt 97  Q
    |||||||||||| |  | |||||||||||||||  |||||||||| ||| |||||    |||||||||||||||||||| |||||||| ||| || || |    
T  8040266 aaaaagcttccttttatgtttttctcttaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttgt 8040169  T
Q  98 aatctaatttcttgtaac-ctc-tttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    || ||||||||||||||| ||| ||| || |||| | ||||||||||||  || ||||||||| ||| || || ||||||    
T  8040168 aagctaatttcttgtaactctcttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtc 8040089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 107
Target Start/End: Original strand, 41586464 - 41586549
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaattt 107  Q
    ||||||||||||||  ||| ||||||  ||||||||||||||| |||||||||||   ||||||||||||| | |||||| |||||||    
T  41586464 ttttctcttaggatccattctgagtg--agtgacttgaaaaataggtagaaattaaagtttgttctttgtgtgcttttaaactaattt 41586549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 2837943 - 2838038
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||  ||| ||||| ||||||||||| | |||||||||| ||||||||||||| | ||   |||||||||||||||    
T  2837943 ttttctcttaggattcattgagaaggtgggtgacatgaaaaatgggcaaaaattaggttgtgttctttgtgagctcttgtactaatttcttgtaac 2838038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 20522367 - 20522280
Alignment:
Q  58 aaaatgggtagaaattaggttttgttcttt-gtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    ||||||||||||||||| || ||||||||| || || || ||||||||||||||||||||  ||| || |||| | ||||||||||||    
T  20522367 aaaatgggtagaaattaagtcttgttcttttgtaagcttataatctaatttcttgtaacccttttgtaacactttcatcatagtggat 20522280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 11690515 - 11690574
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  11690515 aaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 11690574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 14698922 - 14699016
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  14698922 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaac 14699016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 42362366 - 42362425
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  42362366 aaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 42362425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 723900 - 723839
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||| ||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  723900 gaaaactgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 723839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 8390062 - 8390201
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||    |||||||||||||||||||| |||||||| ||  || || ||| |||||||||||||||     
T  8390062 ttttctcttaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgcaagcttgtaagctaatttcttgtaact 8390159  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctct 158  Q
      ||| || |||| | ||||||||||||  || |||||||||    
T  8390160 cttttttaacactttcatcatagtggattggagagctgctct 8390201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 10445394 - 10445452
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  10445394 aaaatgggtagaaattaggtcttgttcttgtgtaagattgtaagctaatttcttgtaac 10445452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 10707165 - 10707289
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||   | | ||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||     
T  10707165 ttttctcttaggattcatattgtgagagtgggtgac---acagatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaact 10707261  T
Q  117 tctttatatcactattatcatagtggat 144  Q
      ||| || |||| | ||||||||||||    
T  10707262 cttttgtaacactttcatcatagtggat 10707289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 129
Target Start/End: Complemental strand, 11151745 - 11151673
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagttt--ttaatctaatttcttgtaacctctttatatcact 129  Q
    |||||||||||||||||| ||| |||||||||||| ||  |||| ||||||||||||||||  ||| |||||||    
T  11151745 aaaatgggtagaaattagattt-gttctttgtgagcttgtttaagctaatttcttgtaacccatttgtatcact 11151673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 39483078 - 39483020
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  39483078 aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaac 39483020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 14633980 - 14633921
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  14633980 aaaatgggtagaaattagg-attgttctttgtgagcttgtttaagctaatttcttgtaacc 14633921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 158
Target Start/End: Complemental strand, 21630090 - 21629989
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgct 156  Q
    ||||||||||||||||| || |||||||| ||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||  || |||||||    
T  21630090 aaaatgggtagaaattaagtcttgttcttgtgtaagcttataaactaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgct 21629991  T
Q  157 ct 158  Q
    ||    
T  21629990 ct 21629989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 24885675 - 24885734
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||| |||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  24885675 aaaatgagtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 24885734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 31056227 - 31056133
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||| ||||| || || ||| ||||||| |||||||    
T  31056227 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttattgtaac 31056133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 34139925 - 34139866
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  34139925 aaaatgggtagaaattagg-gttgttctttgtgagcttgtttaagctaatttcttgtaacc 34139866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 36 - 92
Target Start/End: Original strand, 1345470 - 1345525
Alignment:
Q  36 attgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgag 92  Q
    |||| ||||| | ||||| |||||||||||||||||||||||| |||| ||||||||    
T  1345470 attgagagtgggggtgacatgaaaaatgggtagaaattaggttgtgtt-tttgtgag 1345525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 13569513 - 13569357
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||   || || ||||||||||||||| |||||||| ||| |  || ||| |||||||||||||||     
T  13569513 ttttctcttaggattcatattgtgagagtgggtgaca--aacaaagggtagaaattaggtcttgttcttgtgtaaacttataagctaatttcttgtaact 13569416  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
      ||| || |||| | ||||||||||||  || ||||||||| ||| || || ||||||    
T  13569415 cttttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtc 13569357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 14202559 - 14202501
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||| | |||||||||||||||  | ||||| |||||||||||||||    
T  14202559 aaaatgggtagaaattatg-tttgttctttgtgagcttgtttaagctaatttcttgtaac 14202501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 115
Target Start/End: Original strand, 26353193 - 26353256
Alignment:
Q  54 ttgaaaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaac 115  Q
    |||||||| | |||||||||| | |||||||||||||||||  || || |||||||||||||||    
T  26353193 ttgaaaaaagtgtagaaattaaggtttgttctttgtgagtttgttgaagctaatttcttgtaac 26353256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 77; Significance: 8e-36; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 20 - 148
Target Start/End: Original strand, 102407 - 102535
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||| | || |||| |||||||| |||||||||||||||||||||||||||| |||||| |||||||| ||||||  ||||||||||||||||||    
T  102407 ttttctcttcgaatttattatgagtgtgtgtgacttgaaaaatgggtagaaattagggtttgttttttgtgagcttttaagataatttcttgtaacctct 102506  T
Q  120 ttatatcactattatcatagtggatcaga 148  Q
    || ||||||| ||||||| ||||||||||    
T  102507 ttgtatcactcttatcattgtggatcaga 102535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 1e-34; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 20 - 156
Target Start/End: Original strand, 34670578 - 34670711
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  ||||||||||||||||||||||||||||| ||||||||| | ||||||||||||||| | |||| |||||||||||||||||||    
T  34670578 ttttctcttaggattcattgtgagtgtgagtgacttgaaaaatggatagaaattatgatttgttctttgtgagctattaagctaatttcttgtaacctct 34670677  T
Q  120 ttatatcactattatcatagtggatcagatagctgct 156  Q
    || |   ||  |||||||||||||||||| |||||||    
T  34670678 ttgt---acccttatcatagtggatcagagagctgct 34670711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 144
Target Start/End: Complemental strand, 37782017 - 37781922
Alignment:
Q  49 gtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||| |||||||||    
T  37782017 gtgacttgaaaaatgggtagaaattaagatttgttctttgtgagtttttaagctaatttcttgtaacctctttgtatcacttttattatagtggat 37781922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 18912276 - 18912400
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||||| || ||||||||||||||||||| || || ||||| |||||||||||||||||| ||| ||||||||||||| ||| |    
T  18912276 ttttctcttaggattcattgtgggtttgagtgacttgaaaaatggatataatttagggtttgttctttgtgagtttgtaaactaatttcttgtatccttt 18912375  T
Q  120 ttatatcactattatcatagtggat 144  Q
    || ||||||| ||||||||||||||    
T  18912376 ttgtatcactcttatcatagtggat 18912400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 39774200 - 39774373
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgtt-ctttgtgagtttttaa 99  Q
    |||||||||||| | ||||||| ||||| ||||  |||| ||||||||||||| |||||| ||| |||||||||||| ||||| ||||||||| ||||||    
T  39774200 aaaaagcttccttttgtatttt-ctcttgggattcattgagagtgtgagtgacatgaaaattgg-tagaaattaggtcttgtttctttgtgagcttttaa 39774297  T
Q  100 tctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
     ||||||||||||||||| ||| ||||||| | ||  ||||||||  || ||||||||||||| || |||||||||    
T  39774298 gctaatttcttgtaacctatttgtatcactttcattttagtggattggagagctgctctatcccccagagtaggtc 39774373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 20 - 116
Target Start/End: Complemental strand, 5112421 - 5112325
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||||||||||||| |||||| |||| ||||||||| | ||| ||| ||||||||||| ||||||||||||||||    
T  5112421 ttttctcttaggattcattgtgagtgtgagtgacttaaaaaataggtacaaattaggtctcgttttttatgagtttttaagctaatttcttgtaacc 5112325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 39593910 - 39593791
Alignment:
Q  21 tttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctt 120  Q
    |||||||||||||  |||||| || |||||||||||| ||| ||||||||||||||||   |||||||||||||| ||| ||||||||||||||| | ||    
T  39593910 tttctcttaggattcattgtgggtttgagtgacttgacaaaggggtagaaattaggttga-ttctttgtgagtttgtaaactaatttcttgtaacttatt 39593812  T
Q  121 tatatcactattatcatagtg 141  Q
    | ||||||| |||||||||||    
T  39593811 tgtatcactcttatcatagtg 39593791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 1983214 - 1983337
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||| ||||||  ||||||||||||| || ||||||||| ||||||||||||||||| ||  || |||||||||||||||| ||    
T  1983214 ttttctcttaggattcattgagagtgtaggtgacttgaaaaa-ggatagaaattatgttttgttctttgtgagcttgcaagctaatttcttgtaacccct 1983312  T
Q  120 ttatatcactattatcatagtggat 144  Q
    || ||||||| | ||| ||||||||    
T  1983313 ttgtatcactttgatcctagtggat 1983337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 144
Target Start/End: Complemental strand, 4956352 - 4956239
Alignment:
Q  36 attgtgagtgtgagtgacttgaaaaatgggtagaaatta------ggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcact 129  Q
    |||||||||||| |||||||||||  |||||||||||||      || |||||||||| ||||||||| | ||||||||||||||||||||| ||||| |    
T  4956352 attgtgagtgtgggtgacttgaaat-tgggtagaaattataattagggtttgttctttatgagttttttagctaatttcttgtaacctctttttatcatt 4956254  T
Q  130 attatcatagtggat 144  Q
     ||||||||||||||    
T  4956253 cttatcatagtggat 4956239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 144
Target Start/End: Original strand, 8114680 - 8114774
Alignment:
Q  49 gtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||| || |||||||| ||||||||||||||| || |||  | |||||||||||||| ||||||||| | ||||||||||||||    
T  8114680 gtgacttgaaaaatggatacaaattagggtttgttctttgtgagattataa-gtgatttcttgtaacctatttatatcattcttatcatagtggat 8114774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 158
Target Start/End: Original strand, 873431 - 873569
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    |||||||||| ||  || ||||| |||| |||||| |||| ||| |||||||||||| |||||| |||| ||| ||||||  |||||||||||||||| |    
T  873431 ttttctcttaagacttaatgtgactgtgggtgactcgaaatatgagtagaaattaggatttgttatttgcgagcttttaagttaatttcttgtaacctat 873530  T
Q  120 ttatatcactattatcatagtggatcagatagctgctct 158  Q
    |  ||||| | | ||||||||||||| || || ||||||    
T  873531 tggtatcattctaatcatagtggatcggagagttgctct 873569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 175
Target Start/End: Complemental strand, 18377543 - 18377388
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgtt-ctttgtgagtttttaatctaatttcttgtaacctc 118  Q
    |||| |||||||||  ||||| |||||| ||||| |||||| |||||||||||||||  ||||| ||||||||| |||||| || ||||||| |||||      
T  18377543 ttttttcttaggattcattgtaagtgtgggtgacatgaaaa-tgggtagaaattagggcttgtttctttgtgagcttttaagctgatttcttataaccca 18377445  T
Q  119 tttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    ||| ||||||| | ||| |||||||   ||  |||||||| |||||| |||||||||    
T  18377444 tttgtatcactttcatcttagtggaatggagggctgctctctcctccagagtaggtc 18377388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 22 - 129
Target Start/End: Original strand, 42234286 - 42234390
Alignment:
Q  22 ttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctcttt 121  Q
    ||||||||||||||  |||| |  ||||| |||| ||||||| |||||||||||  || |||||||||||  ||   |||||||||||||||||||||||    
T  42234286 ttctcttaggatat--tgtgggattgagtaacttaaaaaatgagtagaaattagagtt-gttctttgtgaacttgagatctaatttcttgtaacctcttt 42234382  T
Q  122 atatcact 129  Q
    ||||||||    
T  42234383 atatcact 42234390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 175
Target Start/End: Original strand, 16623243 - 16623361
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgct 156  Q
    |||||||||||||||||||| |||||||| ||| || || | | |||||||||||||||   ||| || |||| | ||||||||||||  || |||||||    
T  16623243 aaaatgggtagaaattaggtcttgttcttctgtaagcttattagctaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgct 16623342  T
Q  157 ctatcctccggagtaggtc 175  Q
    || |||||| || ||||||    
T  16623343 ctctcctccagattaggtc 16623361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 132
Target Start/End: Complemental strand, 36175290 - 36175180
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||| ||||||  ||||||||||||  ||||||  ||||||||||||||||||  || ||  | | |||| |||||| ||||||||||| |||||||    
T  36175290 ttttctcataggattcattgtgagtgtg--tgacttagaaaatgggtagaaattagagttcgtcatgtatgagcttttaagctaatttcttgaaacctct 36175193  T
Q  120 ttatatcactatt 132  Q
    || ||||| ||||    
T  36175192 ttgtatcattatt 36175180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 36315181 - 36315297
Alignment:
Q  59 aaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctc 157  Q
    ||||||||||||||||||| ||| |||| ||| || || ||| |||||||||||||| |||||| || |||| | ||||||||||||  || ||||||||    
T  36315181 aaatgggtagaaattaggtcttgctcttgtgtaagcttctaagctaatttcttgtaa-ctctttgtaacactttcatcatagtggattggagagctgctc 36315279  T
Q  158 tatcctccggagtaggtc 175  Q
    | ||| || || ||||||    
T  36315280 tctcccccagattaggtc 36315297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 36329390 - 36329506
Alignment:
Q  59 aaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctc 157  Q
    ||||||||||||||||||| ||| |||| ||| || || ||| |||||||||||||| |||||| || |||| | ||||||||||||  || ||||||||    
T  36329390 aaatgggtagaaattaggtcttgctcttgtgtaagcttctaagctaatttcttgtaa-ctctttgtaacactttcatcatagtggattggagagctgctc 36329488  T
Q  158 tatcctccggagtaggtc 175  Q
    | ||| || || ||||||    
T  36329489 tctcccccagattaggtc 36329506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 3777751 - 3777609
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagttttt 97  Q
    |||||||||||| | ||||||| ||||||||||  |||||||||| ||| |||||    |||||||||||||||||| | |||||||| ||| |||||      
T  3777751 aaaaagcttccttttgtatttt-ctcttaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattagatcttgttcttgtgtaagtttgc 3777655  T
Q  98 aatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    || ||| |||||||||| |||||| || |||| | ||||||||||||    
T  3777654 aagctattttcttgtaa-ctctttgtaacactttcatcatagtggat 3777609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 129
Target Start/End: Original strand, 5871832 - 5871906
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacctctttatatcact 129  Q
    ||||||||||||||||||||| |||||||||||||||  | ||||| | ||||||||||||||  ||| |||||||    
T  5871832 gaaaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagcaaatttcttgtaacccatttttatcact 5871906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 25861928 - 25862041
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaa 99  Q
    ||||| |||||| | || |||||||||||||||  |||| ||||||| |||||    ||||||||||| |||||||| |||||||| ||| || || |||    
T  25861928 aaaaaacttccttttgtgtttttctcttaggattcattgagagtgtgggtgac--acaaaatgggtaggaattaggtcttgttcttgtgtaagcttataa 25862025  T
Q  100 tctaatttcttgtaac 115  Q
     |||||||||||||||    
T  25862026 gctaatttcttgtaac 25862041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 31474164 - 31474223
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| ||||||||| ||||||  || || |||||||||||||||    
T  31474164 aaaatgggtagaaattaggtcttgttctttttgagtttgttgaagctaatttcttgtaac 31474223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 10047526 - 10047439
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||    
T  10047526 aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggat 10047439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 42599523 - 42599581
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  42599523 aaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaac 42599581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 45687337 - 45687303
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag 92  Q
    |||||||| ||||||||||||||||||||||||||    
T  45687337 aaaatgggaagaaattaggttttgttctttgtgag 45687303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 379394 - 379453
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | || || ||||||||||||||||    
T  379394 aaaatgggtagaaattagg-tttgttctttgtgagcttgttgaagctaatttcttgtaacc 379453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 158
Target Start/End: Original strand, 3796469 - 3796570
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgct 156  Q
    |||||||||||||||||||| |||||||| ||  || || ||| |||||||||||||||   ||| || |||| | |||||||||||| ||| || ||||    
T  3796469 aaaatgggtagaaattaggtcttgttcttgtgcaagcttgtaagctaatttcttgtaactcttttgtaacactttcatcatagtggattagagagttgct 3796568  T
Q  157 ct 158  Q
    ||    
T  3796569 ct 3796570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 59 - 175
Target Start/End: Original strand, 5396623 - 5396739
Alignment:
Q  59 aaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctc 157  Q
    ||||||||||||||||||| |||||||| ||| || ||  || ||| |||||||||| ||||||  | |||| | ||||||||||||  || ||||||||    
T  5396623 aaatgggtagaaattaggtcttgttcttgtgtaagcttgcaagctattttcttgtaa-ctctttgcaacactttcatcatagtggattggagagctgctc 5396721  T
Q  158 tatcctccggagtaggtc 175  Q
    | |||||| || ||||||    
T  5396722 tctcctccagattaggtc 5396739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 115
Target Start/End: Original strand, 5269154 - 5269210
Alignment:
Q  60 aatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  5269154 aatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaac 5269210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 21 - 116
Target Start/End: Original strand, 33030854 - 33030949
Alignment:
Q  21 tttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacc 116  Q
    |||||||||||||  |||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  33030854 tttctcttaggattcattgagagtgtgagtgacttgaaaaatgggtagaaattatgttttgttctttgtgagcttttaagctaatttcttgtaacc 33030949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 2630433 - 2630291
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| |||| |||| ||||||||||  |||||||||| | |||||||||||||||  || |||||||||||||||||||||| ||||||||     
T  2630433 aaaaagcttcctttagtgtttt-ctcttaggattcattgtgagtgagggtgacttgaaaaatgtataaaaattaggttttgttctttgtgtgtttttaag 2630335  T
Q  101 ctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    ||||||| ||||||||  ||| ||||||| | ||||||||||||    
T  2630334 ctaatttattgtaacccttttgtatcactttcatcatagtggat 2630291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 20 - 171
Target Start/End: Complemental strand, 6742036 - 6741885
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    |||| |||||||||  |||| ||||||| ||||||||||||||| |||||||||||||||||||||||||||||||  || ||||||||||||||| |||    
T  6742036 ttttttcttaggattcattgagagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagtttgcaagctaatttcttgtaacttct 6741937  T
Q  120 ttatatcactattatcatagtggatcagatagctgctctatcctccggagta 171  Q
    || |||||||   ||| || |||||  || ||||||||||||| || |||||    
T  6741936 ttgtatcacttccatcttaatggattggagagctgctctatcccccagagta 6741885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 7160817 - 7160925
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||||||||  |||| |||||| |||||||| ||||||  |||||||||| || |||||||||||||| ||| |||||||||| |||||||| ||    
T  7160817 ttttctcttaggattcattgagagtgt-agtgacttaaaaaatatgtagaaattaagtcttgttctttgtgagctttaaatctaattttttgtaacccct 7160915  T
Q  120 ttatatcact 129  Q
    || |||||||    
T  7160916 ttgtatcact 7160925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 11181745 - 11181869
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||||||||||| ||||| || |||||||||||||||||||| |||||| |||| ||| |||||  |||||||||||||||       
T  11181745 ttttctcttaggattcattgtgagtgtgggtgacatg-aaaatgggtagaaattaggtcttgttcatttgagagcttttaggctaatttcttgtaactca 11181843  T
Q  119 tttatatcactattatcatagtggat 144  Q
    ||| ||||||| | ||| ||||||||    
T  11181844 tttgtatcactttcatcttagtggat 11181869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 22 - 158
Target Start/End: Complemental strand, 34842785 - 34842649
Alignment:
Q  22 ttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctcttt 121  Q
    ||||||||| ||  |||||| || | |||||||||||||||| |||||||||||| | ||||||| ||||| || |||  |||  |||||||||||||||    
T  34842785 ttctcttagaattcattgtgggttttagtgacttgaaaaatgagtagaaattaggatatgttcttggtgagcttgtaagataacatcttgtaacctcttt 34842686  T
Q  122 atatcact-attatcatagtggatcagatagctgctct 158  Q
     ||||||| |||| |||||||||| ||| |||||||||    
T  34842685 gtatcactcatta-catagtggattagagagctgctct 34842649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 5611289 - 5611198
Alignment:
Q  57 aaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcaga 148  Q
    |||||||| ||||||| || |||||||||||||||  |||||| ||||||| || ||| |||||| ||||| | ||||||||||||||||||    
T  5611289 aaaaatggatagaaataagattttgttctttgtgaacttttaagctaattttttttaatctctttgtatcagttttatcatagtggatcaga 5611198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 46 - 91
Target Start/End: Complemental strand, 3651658 - 3651613
Alignment:
Q  46 tgagtgacttgaaaaatgggtagaaattaggttttgttctttgtga 91  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||    
T  3651658 tgagtgacttgaaaaatgggtagaaattagggtttgttctttgtga 3651613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 30900034 - 30899933
Alignment:
Q  37 ttgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatca 136  Q
    ||||| || |||||| ||||||||||  ||||||| |||  ||||||||||||||| || ||  ||||||||||||||||||||| ||||||| || |||    
T  30900034 ttgtgggtttgagtggcttgaaaaatcagtagaaaatagagtttgttctttgtgagcttgtaggctaatttcttgtaacctctttgtatcactcttctca 30899935  T
Q  137 ta 138  Q
    ||    
T  30899934 ta 30899933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 10281936 - 10281797
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||||||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||     
T  10281936 ttttctcttaggattcatattgtgagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaact 10281839  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctct 158  Q
      ||| || |||| | ||||||||||||  || |||||||||    
T  10281838 cttttgtaacactttcatcatagtggattggagagctgctct 10281797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 158
Target Start/End: Original strand, 12084072 - 12084226
Alignment:
Q  2 aaaagcttcctatagtatttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagttttta 98  Q
    ||||||||||| | || ||||| |||||||||  |||||||||| ||| |||||   | ||||||||||||||||||| |||||||| ||| || |||||    
T  12084072 aaaagcttccttttgtgttttt-tcttaggattcatattgtgagagtgggtgac---acaaatgggtagaaattaggtcttgttcttgtgtaagctttta 12084167  T
Q  99 atctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctct 158  Q
    |  ||||||||||||| |||||| || |||| | ||||||||||||  || |||||||||    
T  12084168 agttaatttcttgtaa-ctctttgtaacactttcatcatagtggattggagagctgctct 12084226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 31336262 - 31336153
Alignment:
Q  19 tttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||| ||||||| || ||||||||||| ||||||| || |||| ||| ||| ||||| ||||| |    |||||||||||||||| |||    
T  31336262 tttttctcttaggatttattgtgggtttgagtgacttg-aaaatggatataaataaggattttttcttagtgagatcgggatctaatttcttgtaagctc 31336164  T
Q  119 tttatatcact 129  Q
    ||| |||||||    
T  31336163 tttgtatcact 31336153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 42127323 - 42127419
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||||||||||||| ||||  |||||| ||||| || || ||| |||||||||||||||    
T  42127323 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaagtaggacttgttcttttgtaagcttataagctaatttcttgtaac 42127419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 116
Target Start/End: Original strand, 33831692 - 33831753
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  33831692 gaaaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 33831753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 3880502 - 3880345
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagttttt 97  Q
    |||||||||||| | || |||||||| ||||||  |||||||||| ||| |||||    |||||||||||||||||||| |||||||| ||| || || |    
T  3880502 aaaaagcttccttttgt-tttttctcctaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttgt 3880406  T
Q  98 aatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctct 158  Q
    || |||||||||||||||   ||| || |||| | ||||||||||||  || |||||||||    
T  3880405 aaactaatttcttgtaactcttttgtaacactttcatcatagtggattggagagctgctct 3880345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 75
Target Start/End: Complemental strand, 28832441 - 28832386
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattag 75  Q
    ||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||||    
T  28832441 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattag 28832386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 31300508 - 31300574
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||| ||||||| ||||  ||| ||||||||||||||||||  ||||||||    
T  31300508 ttttctcttaggattcattgagagtgtgggtgatatgagaaatgggtagaaattaggacttgttctt 31300574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 3075812 - 3075753
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagttt--ttaatctaatttcttgtaacc 116  Q
    ||||| |||||||||||||||| |||||||||||| ||  | |||||||||||||||||||    
T  3075812 aaaataggtagaaattaggttt-gttctttgtgagcttgctgaatctaatttcttgtaacc 3075753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 8566100 - 8566041
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagttt--ttaatctaatttcttgtaacc 116  Q
    ||||||||||||| |||||||| |||||||||||| ||  |||| ||||||||||||||||    
T  8566100 aaaatgggtagaacttaggttt-gttctttgtgagcttgtttaagctaatttcttgtaacc 8566041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 31182986 - 31183045
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||  ||||||||||||||||  |||||  |||||||||||||||    
T  31182986 aaaatgggtagaaattagg-attgttctttgtgagtttgtttaagttaatttcttgtaacc 31183045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 95
Target Start/End: Original strand, 19806395 - 19806432
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgagttt 95  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  19806395 gaaaaatgggtagaaattagg--ttgttctttgtgagttt 19806432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 3e-32; HSPs: 38)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 41 - 175
Target Start/End: Original strand, 4386851 - 4386985
Alignment:
Q  41 gagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagt 140  Q
    ||||||| ||||||||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||||||  ||| ||||||| ||||| || |    
T  4386851 gagtgtgggtgacttgaaaaatgagtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaacccatttgtatcacttttatcttatt 4386950  T
Q  141 ggatcagatagctgctctatcctccggagtaggtc 175  Q
    ||||  || ||||||||| ||| || |||||||||    
T  4386951 ggattggagagctgctctctcccccagagtaggtc 4386985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 40 - 143
Target Start/End: Complemental strand, 29100324 - 29100220
Alignment:
Q  40 tgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcact-attatcata 138  Q
    |||||||  ||||||||||||| | |||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| |||||||  ||||||||    
T  29100324 tgagtgtaggtgacttgaaaaacgagtagaaattagggtttgttctttgtgagtttttaagctaatttcttataacctctttgtatcactctttatcata 29100225  T
Q  139 gtgga 143  Q
    |||||    
T  29100224 gtgga 29100220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 42 - 148
Target Start/End: Original strand, 5366249 - 5366355
Alignment:
Q  42 agtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtg 141  Q
    |||||| |||||| |||||| |||||||||||| | ||| ||| ||||||| ||||||  |||||||||||||||||||| ||||||| | |||||||||    
T  5366249 agtgtgggtgactagaaaaaagggtagaaattaagattttttcattgtgagattttaagataatttcttgtaacctctttgtatcactttcatcatagtg 5366348  T
Q  142 gatcaga 148  Q
    |||||||    
T  5366349 gatcaga 5366355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 38 - 117
Target Start/End: Complemental strand, 25517148 - 25517069
Alignment:
Q  38 tgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacct 117  Q
    |||||||||| ||||||||||||||  |||||||||||| ||||||||||||||| |||||| |||||||||| ||||||    
T  25517148 tgtgagtgtgggtgacttgaaaaataagtagaaattagggtttgttctttgtgagcttttaagctaatttcttataacct 25517069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 140
Target Start/End: Complemental strand, 5797305 - 5797204
Alignment:
Q  38 tgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcat 137  Q
    ||||||| | |||||||||||||||||  |||||||||  |||||| |||||||||||  ||||||||||||||||||||| || |||||||||| ||||    
T  5797305 tgtgagtttaagtgacttgaaaaatggaaagaaattagagtttgttatttgtgagtttggaatctaatttcttgtaacctc-ttgtatcactattttcat 5797207  T
Q  138 agt 140  Q
    |||    
T  5797206 agt 5797204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 21353746 - 21353622
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    |||||||||| |||  ||||| |||||||||| | |||||||||||||||||||||||| ||||||||||||| | ||   |||||||||||||||   |    
T  21353746 ttttctcttaagattcattgtaagtgtgagtggcatgaaaaatgggtagaaattaggttgtgttctttgtgagctcttgtgctaatttcttgtaactcat 21353647  T
Q  120 ttatatcactattatcatagtggat 144  Q
    || ||||||| | ||| ||||||||    
T  21353646 ttgtatcactttcatcttagtggat 21353622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 3328259 - 3328355
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||| |||| ||||||| ||||  ||||||||||||||||||||||  |||||| ||||| || || ||| |||||||||||||||    
T  3328259 ttttctcttaggatacattgagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 3328355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 148
Target Start/End: Complemental strand, 21156576 - 21156485
Alignment:
Q  57 aaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcaga 148  Q
    |||||||| ||||||| || |||||||||||||||  |||||| ||||||| || ||| |||||| ||||| | ||||||||||||||||||    
T  21156576 aaaaatggatagaaataagattttgttctttgtgaacttttaagctaattttttttaatctctttgtatcagttttatcatagtggatcaga 21156485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 20 - 175
Target Start/End: Original strand, 8370390 - 8370544
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||   | |||||||||||||||| || |||||||| ||| || |||||| |||||||||||||| |    
T  8370390 ttttctcttaggattcatattgtgagagtgggtgac---acaaatgggtagaaattatgtcttgttcttgtgtaagcttttaagctaatttcttgtaa-c 8370485  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    ||||| || |||| | ||||||||||||  || ||||||||| ||| || || ||||||    
T  8370486 tctttgtaacactttcatcatagtggattggagagctgctctctcccccagattaggtc 8370544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 1417393 - 1417489
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||||||||||||||||||  |||||| ||||| ||||| ||| |||||||||| ||||    
T  1417393 ttttctcttaggattcattgggagtgtgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagtttataagctaatttcttataac 1417489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 35925663 - 35925540
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttct-ttgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||   | |||||||||||||||||||||||||||  ||| || || ||| |||||||||||||| |    
T  35925663 ttttctcttaggattcatattgtgagagtgggtgac---acaaatgggtagaaattaggttttgttctagtgtaagcttataaactaatttcttgtaa-c 35925568  T
Q  117 tctttatatcactattatcatagtggat 144  Q
    ||||| || |||| | ||||||||||||    
T  35925567 tctttgtaacactttcatcatagtggat 35925540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 59 - 175
Target Start/End: Complemental strand, 21711368 - 21711252
Alignment:
Q  59 aaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctc 157  Q
    ||||||||||||||||||| ||| |||| ||| || |||||| |||||||||||||| |||||| || |||| | ||||||||||||  || ||||||||    
T  21711368 aaatgggtagaaattaggtcttgctcttgtgtaagcttttaagctaatttcttgtaa-ctctttgtaacactttcatcatagtggatttgagagctgctc 21711270  T
Q  158 tatcctccggagtaggtc 175  Q
    | ||| || || ||||||    
T  21711269 tctcccccagattaggtc 21711252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 36029278 - 36029153
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  ||||| |||| |||||||||    |||||||||||||||||||| |||||||| ||| ||||| ||| |||||||||||||||     
T  36029278 ttttctcttaggattcatattttgagagtgagtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagtttgtaagctaatttcttgtaact 36029181  T
Q  117 tctttatatcactattatcatagtggat 144  Q
      ||| || |||| | ||||||||||||    
T  36029180 cttttgtaacactttcatcatagtggat 36029153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 46 - 129
Target Start/End: Original strand, 41163174 - 41163258
Alignment:
Q  46 tgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgag-tttttaatctaatttcttgtaacctctttatatcact 129  Q
    |||||||||||| || ||||| ||||||||| |||||||||| |||| ||||  ||||||||| ||| ||||||||| |||||||    
T  41163174 tgagtgacttgataactgggtcgaaattagggtttgttctttatgagcttttggatctaattttttggaacctctttgtatcact 41163258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 115
Target Start/End: Complemental strand, 9666623 - 9666562
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| ||||||||||||||||  | || || |||||||||||||||    
T  9666623 gaaaaatgggtagaaattagattttgttctttgtgagcttgttgaagctaatttcttgtaac 9666562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 18552787 - 18552910
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||       
T  18552787 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactct 18552884  T
Q  119 tttatatcactattatcatagtggat 144  Q
    ||| || |||| | ||||||||||||    
T  18552885 tttgtaacactttcatcatagtggat 18552910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 24695104 - 24695162
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||| ||||| ||||| ||| |||||||||||||||    
T  24695104 aaaatgggtagaaattaggtcttgttcttttgtaagtttataagctaatttcttgtaac 24695162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 144
Target Start/End: Complemental strand, 40844834 - 40844711
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||       
T  40844834 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactct 40844737  T
Q  119 tttatatcactattatcatagtggat 144  Q
    ||| || |||| | ||||||||||||    
T  40844736 tttgtaacactttcatcatagtggat 40844711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 22835156 - 22835097
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | ||||| ||||||||||||||||    
T  22835156 aaaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttgtaacc 22835097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 25795964 - 25795870
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  25795964 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaac 25795870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 145
Target Start/End: Original strand, 44658396 - 44658521
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    ||||||||| ||||  |||||| || |||||||||||||| |  | ||||||||||  | | |||||||||||||  | | ||||||| ||||||| | |    
T  44658396 ttttctcttgggattaattgtgggtttgagtgacttgaaatacagatagaaattagaatatcttctttgtgagttagtgagctaatttattgtaacattt 44658495  T
Q  120 ttatatcactattatcatagtggatc 145  Q
    || ||||||| ||||| |||||||||    
T  44658496 ttgtatcactcttatcctagtggatc 44658521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 32891117 - 32891176
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||| |||||||||||||||||  | || || |||||||||||||||    
T  32891117 aaaatgggtagaaattaagttttgttctttgtgagcttgttgaagctaatttcttgtaac 32891176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 40592684 - 40592780
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||||||||| ||| |||||    |||||||||||||||||| |||||||||| ||| || || ||| |||||||||||||||    
T  40592684 ttttctcttaggattcatattgtgagagtgggtgacac--aaaatgggtagaaattagattttgttcttgtgtaagcttgtaagctaatttcttgtaac 40592780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 20 - 87
Target Start/End: Original strand, 25929299 - 25929365
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttcttt 87  Q
    ||||||||||||||  |||||||||||| ||||| || |||||| ||||||| ||||| |||||||||    
T  25929299 ttttctcttaggattcattgtgagtgtgggtgacatg-aaaatgagtagaaactaggtcttgttcttt 25929365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 44700632 - 44700563
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaacctctttatatc 126  Q
    |||||||||||||||||||  ||||||||||||||||  || || ||||||||||||||||| ||| ||||    
T  44700632 aaaatgggtagaaattagg-gttgttctttgtgagtttgttgaagctaatttcttgtaacctatttgtatc 44700563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 3715942 - 3716000
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||| || |||||||| ||| ||||| ||| |||||||||||||||    
T  3715942 aaaatgggtagaaattaagtcttgttcttgtgtaagtttgtaagctaatttcttgtaac 3716000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 26299135 - 26299077
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||||| | | ||||| ||| |||||||||||||||    
T  26299135 aaaatgggtagaaattaggtcttgttcttgtctaagtttataagctaatttcttgtaac 26299077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 92
Target Start/End: Complemental strand, 29196541 - 29196507
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag 92  Q
    ||||||||||||||||||| |||||||||||||||    
T  29196541 aaaatgggtagaaattagggtttgttctttgtgag 29196507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 32744590 - 32744532
Alignment:
Q  57 aaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||  |||||||||||||||  | ||||| |||||||||||||||    
T  32744590 aaaaatgggtagaaattag--tttgttctttgtgagcttgtttaagctaatttcttgtaac 32744532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 760861 - 760920
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| | |||||||||||||  | ||||| ||||||||||||||||    
T  760861 aaaatgggtagaaattagg-tctgttctttgtgagcttgtttaagctaatttcttgtaacc 760920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 5434025 - 5433961
Alignment:
Q  64 ggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacctctttatatc 126  Q
    ||||||||||||| |||||||||||||||  | || || ||||||||||||||||  ||||||||    
T  5434025 ggtagaaattagggtttgttctttgtgagcttgttaaagctaatttcttgtaacccttttatatc 5433961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Original strand, 46860488 - 46860547
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | || || ||||||||||||||||    
T  46860488 aaaatgggtagaaattagg-tttgttctttgtgagcttgttgaagctaatttcttgtaacc 46860547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 3323593 - 3323689
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||| ||  |||| ||||||| ||||  |||| ||||||||||||||| |  |||||| ||||| || || ||| |||||||||||||||    
T  3323593 ttttctcttagaattcattgagagtgtgggtgatatgaacaatgggtagaaattatgacttgttcttttgtaagcttataagctaatttcttgtaac 3323689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 8126814 - 8126719
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||| |||  |||| ||||||| |||||   |||||||||||||||||| || |||||| ||||| || || ||| |||||||||||||||    
T  8126814 ttttctcttaagattcattgagagtgtgggtgacac-aaaaatgggtagaaattaagtattgttcttttgtaagcttataagctaatttcttgtaac 8126719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 116
Target Start/End: Original strand, 9581297 - 9581355
Alignment:
Q  59 aaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||| |||||||||||||||  | ||||| |||||||||| |||||    
T  9581297 aaatgggtagaaattagg-tttgttctttgtgagcttgtttaagctaatttcttttaacc 9581355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 76
Target Start/End: Complemental strand, 37387574 - 37387546
Alignment:
Q  48 agtgacttgaaaaatgggtagaaattagg 76  Q
    |||||||||||||||||||||||||||||    
T  37387574 agtgacttgaaaaatgggtagaaattagg 37387546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 39153515 - 39153457
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    ||||||||||||||||||| ||||||| |||||||  | ||||| |||||||||||||||    
T  39153515 aaaatgggtagaaattagg-tttgttcattgtgagcttgtttaagctaatttcttgtaac 39153457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 47923845 - 47923904
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtg--agtttttaatctaatttcttgtaac 115  Q
    |||||||||| ||||||||||||| ||||||||  |  |||||| |||||||||||||||    
T  47923845 aaaatgggtataaattaggttttgctctttgtgtaaacttttaagctaatttcttgtaac 47923904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 70; Significance: 1e-31; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 54 - 226
Target Start/End: Original strand, 28617172 - 28617344
Alignment:
Q  54 ttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggatcagatagct 153  Q
    ||||||||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||| | || ||||||| | ||| ||||||||  || ||||    
T  28617172 ttgaaaaataggtagaaattaggttttgttctttgtgagcttttaagctaatttcttgtaaccccattgtatcactttcatcttagtggattggagagct 28617271  T
Q  154 gctctatcctccggagtaggtcccttttggaccaaactacgcaaacaatattggtgt-cttgttttcttccttt 226  Q
    ||||| ||| || |||||||| | | ||||||| ||||  | |||||||||||||||  |||||||||||||||    
T  28617272 gctctctcccccagagtaggt-catattggaccgaactgggtaaacaatattggtgtgtttgttttcttccttt 28617344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 5817165 - 5817337
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| | || ||||| |||||||||  |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||      
T  5817165 aaaaagcttccttttgtgttttt-tcttaggattcattgagagtgtgagtgacttgaaaaatggatagaaattaggttttgttctttgtgagctcttatg 5817263  T
Q  101 ctaatttcttgtaacctctttatatcactattatcatagtggatcagatagctgctctatcctccggagtaggtc 175  Q
    | |||||||||||||| |||| ||||||| | ||  ||||||||  || ||||||||| ||| || |||||||||    
T  5817264 caaatttcttgtaacccctttgtatcactttcatattagtggattggagagctgctctctcc-ccagagtaggtc 5817337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 23402926 - 23403022
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||||||||  ||||||||||||||||||||||  |||||| ||||| || || ||| |||||||||||||||    
T  23402926 ttttctcttaggattcattgagagtgtgagtgatgtgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 23403022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 115
Target Start/End: Complemental strand, 3047422 - 3047344
Alignment:
Q  36 attgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaac 115  Q
    |||| ||||||| ||||||| ||||||||||||||||||||| |||||||||||||| ||||||  | ||||||||||||    
T  3047422 attgagagtgtgggtgactt-aaaaatgggtagaaattaggtcttgttctttgtgagcttttaagttgatttcttgtaac 3047344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 158
Target Start/End: Complemental strand, 29159989 - 29159849
Alignment:
Q  20 ttttctcttaggat--atattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||  |||||||||| ||| |||||   ||||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||     
T  29159989 ttttctcttaggattcatattgtgagagtgggtgacac-aaaaatgggtagaaattaggtcttgttcttgtgtaagcttgtaagctaatttcttgtaact 29159891  T
Q  117 tctttatatcactattatcatagtggatcagatagctgctct 158  Q
      ||| || |||| | ||||||||||||  || |||||||||    
T  29159890 cttttgtaacactttcatcatagtggattggagagctgctct 29159849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 20284273 - 20284177
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||| ||||||||||||||  |||||| ||||| || || ||| |||||||||||||||    
T  20284273 ttttctcttaggattcattgagagtgtgggtgatatgaaaaaagggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 20284177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 58 - 115
Target Start/End: Complemental strand, 24526051 - 24525992
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgagttttt--aatctaatttcttgtaac 115  Q
    ||||||||||||||||||||||||||||||||||| || |  || |||||||||||||||    
T  24526051 aaaatgggtagaaattaggttttgttctttgtgagcttgtcaaagctaatttcttgtaac 24525992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 117
Target Start/End: Complemental strand, 761328 - 761261
Alignment:
Q  50 tgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacct 117  Q
    ||||||||||||||||||||||||||  ||| ||||||||||| |||| | || |||| |||||||||    
T  761328 tgacttgaaaaatgggtagaaattagtgttttttctttgtgagcttttgagctcatttattgtaacct 761261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 2647610 - 2647733
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||| ||||||| |||||    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||       
T  2647610 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactct 2647707  T
Q  119 tttatatcactattatcatagtggat 144  Q
    ||| || |||| | ||||||||||||    
T  2647708 tttgtaacactttcatcatagtggat 2647733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 50 - 144
Target Start/End: Original strand, 4162712 - 4162805
Alignment:
Q  50 tgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||  |||||||||| | ||||||||||||||| ||  |||||| |||||||||||| |||| ||| | |  |||||||||||||    
T  4162712 tgacttgaaaaataagtagaaattatgatttgttctttgtgag-ttggaatctactttcttgtaaccactttgtattagtcatatcatagtggat 4162805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 89
Target Start/End: Original strand, 45685658 - 45685727
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgt 89  Q
    ||||||||||||||  |||| || | |||||||||| |||||||| ||||||||| | ||||||||||||    
T  45685658 ttttctcttaggattcattgcgactttgagtgacttaaaaaatggatagaaattaaggtttgttctttgt 45685727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 9235495 - 9235591
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||   ||| ||||| | ||||  ||||||||||||||||||||||  |||||| ||||| || || ||| |||||||||||||||    
T  9235495 ttttctcttaggattcgttgagagtgcgggtgatatgaaaaatgggtagaaattaggacttgttcttttgtaagcttataagctaatttcttgtaac 9235591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 56094 - 56007
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||   ||| || |||| | ||||||||||||    
T  56094 aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactcttttgtaacactttcatcatagtggat 56007  T

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Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 46516260 - 46516347
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    ||||||||||||||||| || |||||||| ||| || |||||| |||||||||||||||   ||| || |||| | ||||||||||||    
T  46516260 aaaatgggtagaaattatgtcttgttcttgtgtaagcttttaagctaatttcttgtaactcttttgtaacactttcatcatagtggat 46516347  T

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Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 2580574 - 2580508
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||| ||||||| ||||  ||||||||||||||||| ||||  ||||||||    
T  2580574 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaactaggacttgttctt 2580508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 9185087 - 9185153
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||  ||||||| ||||  ||||||||||||||||||||||  ||||||||    
T  9185087 ttttctcttaggattcattaagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 9185153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 86
Target Start/End: Original strand, 9189920 - 9189986
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||  ||||||| ||||  ||||||||||||||||||||||  ||||||||    
T  9189920 ttttctcttaggattcattaagagtgtgggtgatatgaaaaatgggtagaaattaggacttgttctt 9189986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 8359471 - 8359412
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| ||| |||||||||||  | ||||| ||||||||||||||||    
T  8359471 aaaatgggtagaaattagggttt-ttctttgtgagcttgtttaaactaatttcttgtaacc 8359412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 115
Target Start/End: Complemental strand, 23565217 - 23565157
Alignment:
Q  57 aaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaac 115  Q
    |||||| |||||||||||||| ||||||||||||||  | || || |||||||||||||||    
T  23565217 aaaaataggtagaaattaggtcttgttctttgtgagcttgttgaaactaatttcttgtaac 23565157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 126
Target Start/End: Complemental strand, 36574665 - 36574601
Alignment:
Q  64 ggtagaaattaggttttgttctttgtgagtt--tttaatctaatttcttgtaacctctttatatc 126  Q
    ||||||||||| | |||||||||||||||||  || || ||||||||||||||||  ||||||||    
T  36574665 ggtagaaattaagatttgttctttgtgagtttgttgaagctaatttcttgtaacccttttatatc 36574601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 41649166 - 41649106
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag-tttttaatctaatttcttgtaacc 116  Q
    ||||||| ||||||||||||| ||||||||||||||| || || | ||||||||||||||||    
T  41649166 gaaaaattggtagaaattagg-tttgttctttgtgagcttgtttagctaatttcttgtaacc 41649106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 115
Target Start/End: Original strand, 33332363 - 33332458
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||   |||| ||||||| |||| |  ||||||| ||||||||||||| |||||| ||||| || || ||| |||||||||||||||    
T  33332363 ttttctcttaggaatcattgagagtgtgcgtga-tacaaaaatgagtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaac 33332458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 37 - 148
Target Start/End: Original strand, 30518058 - 30518169
Alignment:
Q  37 ttgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatca 136  Q
    ||||||||||| || ||||||||||| ||||||||||| | ||||||||||||||  ||||||  || |||| |||||||||||| ||||||| ||||||    
T  30518058 ttgtgagtgtgggtaacttgaaaaataggtagaaattaaggtttgttctttgtgaacttttaagttagtttcatgtaacctctttgtatcactcttatca 30518157  T
Q  137 tagtggatcaga 148  Q
    ||||||||||||    
T  30518158 tagtggatcaga 30518169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 41 - 148
Target Start/End: Original strand, 33721493 - 33721600
Alignment:
Q  41 gagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagt 140  Q
    ||||||| ||||| | |||||||||   ||||||||||||||||||| ||||||||||| ||||||||||||||||||||| ||| | | ||||||||||    
T  33721493 gagtgtgtgtgacctaaaaaatgggggaaaattaggttttgttctttatgagtttttaaactaatttcttgtaacctctttgtataattcttatcatagt 33721592  T
Q  141 ggatcaga 148  Q
    ||||||||    
T  33721593 ggatcaga 33721600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 144
Target Start/End: Original strand, 1115033 - 1115141
Alignment:
Q  36 attgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatc 135  Q
    |||||||||||| |||||||||||||||| ||||||||||| |||||| ||| |||| ||||||  | |||||||||||||| ||| ||||| | |||||    
T  1115033 attgtgagtgtgggtgacttgaaaaatggatagaaattagggtttgttatttttgagcttttaagttgatttcttgtaacctatttgtatcattcttatc 1115132  T
Q  136 atagtggat 144  Q
    |||||||||    
T  1115133 atagtggat 1115141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 20 - 92
Target Start/End: Complemental strand, 14521857 - 14521785
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgag 92  Q
    |||||||||||||| ||||| ||||||| ||||| ||||||||| |||||||||||||| |||||||||||||    
T  14521857 ttttctcttaggatttattgagagtgtgggtgacatgaaaaatgtgtagaaattaggttgtgttctttgtgag 14521785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 99357 - 99245
Alignment:
Q  1 aaaaagcttcctatagtatttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaat 100  Q
    |||||||||||| | ||||||| ||| ||||||  ||||||||||||||| |||| ||||||||||||||||||   |||||||| |||||| || |||     
T  99357 aaaaagcttcctttggtatttt-ctcataggattcattgtgagtgtgagtaactt-aaaaatgggtagaaattaaagtttgttctctgtgagcttctaag 99260  T
Q  101 ctaatttcttgtaac 115  Q
    |||||||||||||||    
T  99259 ctaatttcttgtaac 99245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 58 - 117
Target Start/End: Original strand, 16569047 - 16569108
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacct 117  Q
    |||||||||||||||||||||||||||||||||||  | ||||| |||||||||||||||||    
T  16569047 aaaatgggtagaaattaggttttgttctttgtgagcttgtttaagctaatttcttgtaacct 16569108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 20 - 86
Target Start/End: Complemental strand, 31936761 - 31936695
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt 86  Q
    ||||||||||||||  |||| ||||||| ||||  |||||||||||||||||||||| |||||||||    
T  31936761 ttttctcttaggattcattgagagtgtgggtgatatgaaaaatgggtagaaattaggatttgttctt 31936695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 31076849 - 31076978
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaa-----aatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaa 114  Q
    ||||||||||||||  || |||| |||| |||||||||||     ||||| || ||||||||| |||||||||||||  | |||| ||||||| ||||||    
T  31076849 ttttctcttaggattcatagtgattgtgggtgacttgaaattaaaaatggataaaaattaggtcttgttctttgtgaactcttaagctaatttattgtaa 31076948  T
Q  115 cctctttatatcactattatcatagtggat 144  Q
    ||  ||| ||||||| ||||| ||||||||    
T  31076949 cccatttgtatcacttttatcttagtggat 31076978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 10077115 - 10077202
Alignment:
Q  58 aaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| |||||| ||||| || || ||| ||||||||||||||| | ||| || |||| | ||||||||||||    
T  10077115 aaaatgggtagaaattaggtcttgttcttttgtaagcttataagctaatttcttgtaacttttttgtaacactttcatcatagtggat 10077202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 31979697 - 31979602
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttc-tttgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||| ||||||| |||||   ||||||||||||||||||||| |||||| ||||| || || |||  ||||||||||||||    
T  31979697 ttttctcttaggattcattgagagtgtgggtgacac-aaaaatgggtagaaattaggtcttgttcttttgtaagcttataagttaatttcttgtaac 31979602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 128
Target Start/End: Original strand, 33690738 - 33690846
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctct 119  Q
    |||| |||||||||  || ||| || ||||||||||||||| || |||||||||||   ||||||||| |||| ||   || |||||||||||||| |||    
T  33690738 ttttttcttaggattcatcgtgggtttgagtgacttgaaaagtgtgtagaaattagagcttgttctttttgagcttaggatataatttcttgtaacatct 33690837  T
Q  120 ttatatcac 128  Q
    || ||||||    
T  33690838 ttgtatcac 33690846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 116
Target Start/End: Complemental strand, 22424983 - 22424922
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  22424983 gaaaaatgggtagaaattagg-gttgttctttgtgagcttgtttaagctaatttcttgtaacc 22424922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Original strand, 31086423 - 31086510
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| ||| |||| ||| || || ||| |||||||||||||||  |||| || |||| | ||||||||||||    
T  31086423 aaaatgggtagaaattaggtcttgctcttgtgtaagcttataagctaatttcttgtaactcctttgtaacactttcatcatagtggat 31086510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 31418929 - 31419035
Alignment:
Q  21 tttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgag-tttttaatctaatttcttgtaacctct 119  Q
    |||||||||| || | ||||| || ||||||||||||||||| || ||||||||    |||||||||| ||| || ||||| |||||||||||||| |||    
T  31418929 tttctcttagaatttgttgtgggtttgagtgacttgaaaaat-ggaagaaattaaagattgttctttgagagcttgttaatataatttcttgtaacttct 31419027  T
Q  120 ttatatca 127  Q
    || |||||    
T  31419028 ttgtatca 31419035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 58 - 115
Target Start/End: Original strand, 5017430 - 5017488
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    |||||||||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  5017430 aaaatgggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaac 5017488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 5572155 - 5572278
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctc 118  Q
    ||||||||||||||  |||| ||||||| |||||    |||||| ||||||||||||| |||||||| ||| || || ||| |||||||||||||||       
T  5572155 ttttctcttaggattcattgagagtgtgggtgacac--aaaatgcgtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaactct 5572252  T
Q  119 tttatatcactattatcatagtggat 144  Q
    ||| || |||| | ||||||||||||    
T  5572253 tttgtaacactttcatcatagtggat 5572278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 2973093 - 2973034
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    ||||||||||||||||||| |||||||||||||||  | || || ||||||||||||||||    
T  2973093 aaaatgggtagaaattagg-tttgttctttgtgagcttgttgaagctaatttcttgtaacc 2973034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 58 - 116
Target Start/End: Complemental strand, 28137562 - 28137503
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttgtaacc 116  Q
    |||||||||||||||||||  ||||||||||||||  | ||||| ||||||||||||||||    
T  28137562 aaaatgggtagaaattagg-gttgttctttgtgagcttgtttaagctaatttcttgtaacc 28137503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 111
Target Start/End: Original strand, 16567210 - 16567265
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctttgtgag--tttttaatctaatttcttg 111  Q
    ||||||| |||||||||||||||||| ||||||||  | ||||| |||||||||||    
T  16567210 aaaatggttagaaattaggttttgttttttgtgagcttgtttaagctaatttcttg 16567265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 37 - 138
Target Start/End: Complemental strand, 14849 - 14748
Alignment:
Q  37 ttgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatca 136  Q
    ||||||||||| |||||||||||||| ||||| || |||| || |||||||||||| |||||| ||||||||| ||||||||||| ||||||| ||||||    
T  14849 ttgtgagtgtgggtgacttgaaaaataggtaggaactagggttagttctttgtgagcttttaagctaatttctcgtaacctctttgtatcactcttatca 14750  T
Q  137 ta 138  Q
    ||    
T  14749 ta 14748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0076 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0076
Description:

Target: scaffold0076; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 56 - 144
Target Start/End: Original strand, 15937 - 16025
Alignment:
Q  56 gaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    ||||||||||   |||||||||||||||||||||| |||||||| ||||||||||||||| ||||| ||| ||| ||||||||||||||    
T  15937 gaaaaatgggggaaaattaggttttgttctttgtgggtttttaagctaatttcttgtaacatctttgtataactcttatcatagtggat 16025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 20 - 114
Target Start/End: Complemental strand, 23715 - 23622
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaa 114  Q
    ||||||||||||||  ||||||||||||  |||| |||||| |||||||||||||| | ||||| |||||||| || |||   ||||||||||||    
T  23715 ttttctcttaggattcattgtgagtgtgtctgacatgaaaa-tgggtagaaattagatcttgttttttgtgagcttctaagaaaatttcttgtaa 23622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1444 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold1444
Description:

Target: scaffold1444; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 1329 - 1258
Alignment:
Q  50 tgacttgaaaaatgggtagaaattaggttttgttctttgtgagtttttaatctaatttcttgtaacctcttt 121  Q
    |||||| ||||||| |||||||||||| |||||| |||||||| ||  ||| |||||| |||| ||||||||    
T  1329 tgacttaaaaaatgagtagaaattagggtttgttttttgtgagcttgaaatataattttttgttacctcttt 1258  T

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Target: scaffold0036 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 58 - 144
Target Start/End: Complemental strand, 85829 - 85743
Alignment:
Q  58 aaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaacctctttatatcactattatcatagtggat 144  Q
    |||||||||||||||||||| ||| |||| ||| || |||||| |||||||||||||| |||||| || |||| | ||||| ||||||    
T  85829 aaaatgggtagaaattaggtcttgctcttgtgtaagcttttaagctaatttcttgtaa-ctctttgtaacactttcatcatggtggat 85743  T

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Target: scaffold0176 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 115
Target Start/End: Complemental strand, 17446 - 17352
Alignment:
Q  20 ttttctcttaggatatattgtgagtgtgagtgacttgaaaaatgggtagaaattaggttttgttctt-tgtgagtttttaatctaatttcttgtaac 115  Q
    ||||||||||||||  |||  |||||||||||||    ||||| |||||||||||||| |||||||| ||| || || ||| |||||||||||||||    
T  17446 ttttctcttaggattcattaagagtgtgagtgacac--aaaataggtagaaattaggtcttgttcttgtgtaagcttataagctaatttcttgtaac 17352  T

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