View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6665_low_34 (Length: 251)
Name: NF6665_low_34
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_34 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 6314234 - 6313994
Alignment:
| Q |
1 |
cacaagtgaatccaaacatgtataaattacacatttctctcatgtaagtaatgtgtttataactttattcaaagctaatttttgctattatgtaggtctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6314234 |
cacaagtgaatccaaacatgtataaattacacatttctctcatgtaagtaatgtgtttataactttattcaaagctaatttttgctattatgtaggtctg |
6314135 |
T |
|
| Q |
101 |
ctgtggaagattatattgctgcaatgaagaaaatgtgctgtctagtgttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcag |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6314134 |
ctgtggaagattatattgctgcaatgaagaaaatgtgctgtctagtgttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcag |
6314035 |
T |
|
| Q |
201 |
gttattgaaagatgagaaaagtgattcttgtttcagtatta |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
6314034 |
gttattgaaagatgagaaaagtgattcttgtttcagaatta |
6313994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 148 - 233
Target Start/End: Original strand, 38545217 - 38545302
Alignment:
| Q |
148 |
ttggaattaatggctgatgggttggggattgagccaaagaatgtgttaagcaggttattgaaagatgagaaaagtgattcttgttt |
233 |
Q |
| |
|
|||||||||||||| ||||| ||| ||||||| |||| ||||||||| ||||| || ||| |||||||| ||||||||||||||| |
|
|
| T |
38545217 |
ttggaattaatggcagatggattgaggattgaaccaaggaatgtgtttagcagattggtgagagatgagagaagtgattcttgttt |
38545302 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University