View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_35 (Length: 250)

Name: NF6665_low_35
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_35
NF6665_low_35
[»] chr6 (1 HSPs)
chr6 (1-242)||(17170580-17170816)
[»] chr8 (2 HSPs)
chr8 (71-150)||(40995822-40995901)
chr8 (97-146)||(6108586-6108635)
[»] chr4 (2 HSPs)
chr4 (71-146)||(27756467-27756542)
chr4 (71-146)||(3427863-3427938)
[»] chr1 (2 HSPs)
chr1 (71-149)||(1408616-1408694)
chr1 (70-146)||(4941199-4941275)
[»] chr5 (3 HSPs)
chr5 (78-149)||(19187144-19187215)
chr5 (71-150)||(21067613-21067692)
chr5 (84-151)||(38282507-38282574)
[»] chr2 (1 HSPs)
chr2 (71-146)||(4614283-4614358)


Alignment Details
Target: chr6 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 17170816 - 17170580
Alignment:
Q  1 ttttttgtcacaaaaatatatcaatcacatcacatgcaaacaaaataaataagggtaaggattcaaatgtaatgtagtaagttttaccttaaaatttgtg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |     ||||||||||| ||| ||||| ||    
T  17170816 ttttttgtcacaaaaatatatcaatcacatcacatgcaaacaaaataaataagggtaaggattcaaacgca-----gtaagttttacattagaatttatg 17170722  T
Q  101 ttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttcannnnnnnaattttcttaaccggtggttaacacgaataaataaataatgt 200  Q
    ||||||| | || ||||| ||||||||| ||||||||||| ||||| ||         ||||| ||||||| ||||||||||||||||||||||||||||    
T  17170721 ttgttaattttttaaaaatataaaaagtgttatttttattttaaaattttctttttttaatttccttaaccagtggttaacacgaataaataaataatgt 17170622  T
Q  201 caaattacacttccaaatcaacaaaatcttacacagaataat 242  Q
    |||||||||||||| |||||||||||||||||||| ||||||    
T  17170621 caaattacacttcccaatcaacaaaatcttacacaaaataat 17170580  T

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Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 40995901 - 40995822
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc 150  Q
    |||||||||||| |||| || ||||||||||||| || |||||||||||||||||||| ||||||| ||| |||||||||    
T  40995901 aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaacttc 40995822  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 6108586 - 6108635
Alignment:
Q  97 tgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 146  Q
    ||||||||||| || ||||||||||||||||||||||||| ||| |||||    
T  6108586 tgtgttgttaactcctcaaaaacataaaaagtattattttcattttaaaa 6108635  T

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Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 27756467 - 27756542
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 146  Q
    |||||||||||| |||| || ||||||||||||| || ||||||||| |||||||||| ||||||| ||| |||||    
T  27756467 aatgtagtaagtattacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttattttcattttaaaa 27756542  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 146
Target Start/End: Original strand, 3427863 - 3427938
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 146  Q
    |||||||||||| ||   || ||| ||||||||| || |||||||||||||||||||| ||||||| ||| |||||    
T  3427863 aatgtagtaagtattgtattgaaacttgtgttgtcaactcttcaaaaacataaaaagtgttattttcattttaaaa 3427938  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 1408616 - 1408694
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt 149  Q
    |||||||||| |||||| ||  || ||||||||| || |||||||||||||||||||| ||||||| ||| ||||||||    
T  1408616 aatgtagtaatttttacattggaacttgtgttgtcaactcttcaaaaacataaaaagttttattttcattttaaaactt 1408694  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 146
Target Start/End: Complemental strand, 4941275 - 4941199
Alignment:
Q  70 taatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 146  Q
    ||||||||||| | || | || ||| ||||||||| || || |||||| |||||||||| ||||||||||| |||||    
T  4941275 taatgtagtaattattgcattgaaacttgtgttgtcaactcctcaaaagcataaaaagtgttatttttattttaaaa 4941199  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 149
Target Start/End: Original strand, 19187144 - 19187215
Alignment:
Q  78 taagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaactt 149  Q
    |||||||||| || ||||||||||||| || ||||||||| |||||||||| || |||| ||| ||||||||    
T  19187144 taagttttacattgaaatttgtgttgtcaactcttcaaaagcataaaaagtgttgttttcattttaaaactt 19187215  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 150
Target Start/End: Original strand, 21067613 - 21067692
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttc 150  Q
    |||||||||||| |||| || ||| ||||||||| |  ||||||||| ||||||||||| || ||| ||| |||||||||    
T  21067613 aatgtagtaagtattacattgaaacttgtgttgtcatctcttcaaaagcataaaaagtagtactttcattttaaaacttc 21067692  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 38282507 - 38282574
Alignment:
Q  84 ttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaacttca 151  Q
    |||| |||||||||||||||| || |||| ||||| ||||||||| ||||||| ||| ||||| ||||    
T  38282507 ttacattaaaatttgtgttgtcaactctttaaaaatataaaaagtgttattttcattttaaaatttca 38282574  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 146
Target Start/End: Complemental strand, 4614358 - 4614283
Alignment:
Q  71 aatgtagtaagttttaccttaaaatttgtgttgttaagtcttcaaaaacataaaaagtattatttttattataaaa 146  Q
    |||||||||||| |||| ||| ||||| |||||| || || |||||||||| ||||||  |||||||||| |||||    
T  4614358 aatgtagtaagtattacattagaatttatgttgtcaactcatcaaaaacatgaaaagtgctatttttattttaaaa 4614283  T

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