View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_36 (Length: 249)
Name: NF6665_low_36
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 8 - 249
Target Start/End: Complemental strand, 55030724 - 55030478
Alignment:
| Q |
8 |
attattcttaaatgcagctaaactgatattttgttgaagaaaggtttattcttgttagactgattgcgtgaaaaaagcaatgtcccaatttttctttgag |
107 |
Q |
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| T |
55030724 |
attattcttaaatgcagctaaactgatattttgttgaagaaaggtttattcttgttagactgattgcgtgaaaaaagcaatgtcccaatttttctttgag |
55030625 |
T |
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| Q |
108 |
accttgatctcctttcctttc-----aaatttaaactaaaatcttgtatttgtttgttgcttaacctgatctggtaactcatttatgtataaacctcaaa |
202 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
55030624 |
accttgatctcctttcctttcctttcaaatttaaactaaaatcttgtatttgtttgttgcttaacctgatctggtaactcatttatgtataaatctcaaa |
55030525 |
T |
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| Q |
203 |
tttccaatttctattttggtaatactttatttgggttttacccacat |
249 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
55030524 |
tttccaatttctattttggtaatactttatttgggtttcacccacat |
55030478 |
T |
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