View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_38 (Length: 241)

Name: NF6665_low_38
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_38
NF6665_low_38
[»] chr6 (3 HSPs)
chr6 (1-221)||(33636277-33636497)
chr6 (120-184)||(17168876-17168941)
chr6 (133-188)||(2140489-2140545)
[»] chr2 (1 HSPs)
chr2 (15-76)||(4690169-4690230)
[»] chr7 (1 HSPs)
chr7 (123-168)||(23930204-23930249)
[»] chr3 (1 HSPs)
chr3 (130-186)||(39002024-39002081)


Alignment Details
Target: chr6 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 33636277 - 33636497
Alignment:
Q  1 agtgctacacccgcaaaaattgcacttatattaacaaaaatcttattaaaaaagttcggctaagagaaaattattattaataacggcatcaatatatgaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33636277 agtgctacacccgcaaaaattgcacttatattaacaaaaatcttattaaaaaagttcggctaagagaaaattattattaataacggcatcaatatatgaa 33636376  T
Q  101 gaacaaacataaatatcggacacgacatagacacatcgacattgatagtaatttgaaaaaatgacatattcattgtaattatatatattgatgttgtctt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33636377 gaacaaacataaatatcggacacgacatagacacatcgacattgacagtaatttgaaaaaatgacatattcattgtaattatatatattgatgttgtctt 33636476  T
Q  201 gaatacaatacatatttgaca 221  Q
    |||||||||||||||||||||    
T  33636477 gaatacaatacatatttgaca 33636497  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 120 - 184
Target Start/End: Original strand, 17168876 - 17168941
Alignment:
Q  120 acacgacatagacacatcgacattgatagtaatttgaaaaaatgacat-attcattgtaattatat 184  Q
    |||||||| | |||| |||||||||||| ||||||||||||||||||| ||||| ||||| |||||    
T  17168876 acacgacacaaacacgtcgacattgataataatttgaaaaaatgacataattcaatgtaactatat 17168941  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 188
Target Start/End: Complemental strand, 2140545 - 2140489
Alignment:
Q  133 acatcgacattgatagtaatttgaaaaaatgacat-attcattgtaattatatatat 188  Q
    ||||||||||||||| |||||||| |||||||||| ||||| ||||| |||| ||||    
T  2140545 acatcgacattgataataatttgagaaaatgacataattcaatgtaactatacatat 2140489  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 4690169 - 4690230
Alignment:
Q  15 aaaaattgcacttatattaacaaaaatcttattaaaaaagttcggctaagagaaaattatta 76  Q
    |||||||||||| || |||||||||||||||||||||||| | |||||||||||||||||||    
T  4690169 aaaaattgcactcattttaacaaaaatcttattaaaaaagattggctaagagaaaattatta 4690230  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 23930204 - 23930249
Alignment:
Q  123 cgacatagacacatcgacattgatagtaatttgaaaaaatgacata 168  Q
    |||||| ||||||||||||  ||||||||||||| |||||||||||    
T  23930204 cgacattgacacatcgacacggatagtaatttgagaaaatgacata 23930249  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 130 - 186
Target Start/End: Original strand, 39002024 - 39002081
Alignment:
Q  130 gacacatcgacattgatagtaatttgaaaaaatgacat-attcattgtaattatatat 186  Q
    |||||| |||||| ||||| ||||||||||||| |||| ||||| |||||||||||||    
T  39002024 gacacaccgacatggataggaatttgaaaaaatcacataattcaatgtaattatatat 39002081  T

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