View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_4 (Length: 475)
Name: NF6665_low_4
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_4 |
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| [»] scaffold0565 (2 HSPs) |
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Alignment Details
Target: scaffold0565 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0565
Description:
Target: scaffold0565; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 9051 - 8857
Alignment:
| Q |
1 |
atttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtatatgttgtagacattttaaaccgttcttaata |
100 |
Q |
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| T |
9051 |
atttctaaaatgttgaatctgtaaaacaatttcctttgttactccttaatcaaatcatagggtatgtatatgttgtagacattttaaaccgttcttaata |
8952 |
T |
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| Q |
101 |
atgcagagctcttctctttagaagaactccaaaagtaatgatcacacatggtgtataatgttaaatccttagccagcttgatccaaacaaaaaac |
195 |
Q |
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| T |
8951 |
atgcagagctcttctctttagaagaactccaaaagttatgatcacacatggtgtataatgttaaatccttagccagcttgatccaaacaaaaaac |
8857 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0565; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 351 - 454
Target Start/End: Complemental strand, 8857 - 8754
Alignment:
| Q |
351 |
caaaattaatccttatttcaaaaattaaaagttgaagattaatgnnnnnnnncatttgtacttgtgacgataacatcacaaagcgaaatatatacatgtt |
450 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8857 |
caaaagtaatccttatttcaaaaattaaaagttgaagattaatgaaaaaaaacatttgtacttgtgacgataacatcacaaagcgaaatatatacatgtt |
8758 |
T |
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| Q |
451 |
ccgt |
454 |
Q |
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|||| |
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| T |
8757 |
ccgt |
8754 |
T |
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