View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_40 (Length: 239)

Name: NF6665_low_40
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_40
NF6665_low_40
[»] chr2 (5 HSPs)
chr2 (91-197)||(6314481-6314587)
chr2 (116-197)||(32854573-32854655)
chr2 (1-33)||(6314391-6314423)
chr2 (127-196)||(17777111-17777180)
chr2 (149-197)||(11265065-11265113)
[»] chr8 (3 HSPs)
chr8 (127-197)||(40904584-40904654)
chr8 (127-197)||(5328514-5328584)
chr8 (127-191)||(31024347-31024411)
[»] chr3 (8 HSPs)
chr3 (129-187)||(44364076-44364133)
chr3 (127-191)||(44625178-44625242)
chr3 (127-197)||(25883935-25884005)
chr3 (127-191)||(15085637-15085701)
chr3 (127-191)||(27329885-27329949)
chr3 (127-191)||(41253702-41253766)
chr3 (127-191)||(41710636-41710700)
chr3 (127-191)||(51879148-51879212)
[»] chr7 (2 HSPs)
chr7 (128-197)||(18503427-18503496)
chr7 (127-197)||(32047142-32047212)
[»] chr5 (2 HSPs)
chr5 (127-191)||(8241103-8241167)
chr5 (127-191)||(3741007-3741071)
[»] chr4 (2 HSPs)
chr4 (127-191)||(30305852-30305916)
chr4 (127-191)||(36099136-36099200)
[»] chr1 (2 HSPs)
chr1 (127-196)||(47930619-47930688)
chr1 (149-177)||(24983511-24983539)
[»] scaffold0010 (1 HSPs)
scaffold0010 (127-191)||(236311-236374)


Alignment Details
Target: chr2 (Bit Score: 95; Significance: 1e-46; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 91 - 197
Target Start/End: Original strand, 6314481 - 6314587
Alignment:
Q  91 gtcattcgggtcaacgtccccgtggatgcaagggccgggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggct 190  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6314481 gtcattcggttcaacgtccccgtggatgcaggggccgggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagtttgaaccactaggct 6314580  T
Q  191 atttgac 197  Q
    |||||||    
T  6314581 atttgac 6314587  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 116 - 197
Target Start/End: Original strand, 32854573 - 32854655
Alignment:
Q  116 atgcaagggccggg-ttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||||||||||| ||||||||||||| |||  |||| | ||||||||||||||| |||||  | ||||||||||| |||||    
T  32854573 atgcaagggccggggttcgaaccccggacaccctacttctccacatttaaaatgtgtgagctccagccactaggctacttgac 32854655  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 6314391 - 6314423
Alignment:
Q  1 ttcaaccagccagtccgggctgttggttcaacc 33  Q
    |||||||||||||||||||||||||||||||||    
T  6314391 ttcaaccagccagtccgggctgttggttcaacc 6314423  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 17777180 - 17777111
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttga 196  Q
    |||||||||||||||| |||  |||| | ||||||||||||||||||||   | ||||||||||| ||||    
T  17777180 gggttcgaaccccggacaccccacttctccacatttaaaatgtgcgagccctatccactaggctacttga 17777111  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 197
Target Start/End: Complemental strand, 11265113 - 11265065
Alignment:
Q  149 actttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||| ||| ||||||||||| |||||| | |||||||||||||||||    
T  11265113 acttttccacgtttaaaatgtgtgagcttcagccactaggctatttgac 11265065  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 40904584 - 40904654
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    ||||||||||| |||| |||| |||| | |||||||||||||||||||||| | ||||||| |||| ||||    
T  40904584 gggttcgaacctcggacacctcacttctccacatttaaaatgtgcgagcttcagccactagactatctgac 40904654  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 5328584 - 5328514
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||||||||||||| |||| |||| | |||| |||||||||| |||||  | ||||||||||| |||||    
T  5328584 gggttcgaaccccggacacctcacttctccacaattaaaatgtgtgagctctagccactaggctacttgac 5328514  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 31024347 - 31024411
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | |||||||||||    
T  31024347 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggcta 31024411  T

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Target: chr3 (Bit Score: 35; Significance: 0.00000000008; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 129 - 187
Target Start/End: Original strand, 44364076 - 44364133
Alignment:
Q  129 gttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactag 187  Q
    ||||||||||||||||||  |||||||||||||||||||||| || ||| |||||||||    
T  44364076 gttcgaaccccggataccc-actttttcacatttaaaatgtgtgaactttaaccactag 44364133  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 44625242 - 44625178
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  |||||||||||||    
T  44625242 gggttcgaaccccggacaccccacttctccacatttaaaatgtgggagctccaaccactaggcta 44625178  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Complemental strand, 25884005 - 25883935
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | ||||||||||| |||||    
T  25884005 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggctacttgac 25883935  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 15085701 - 15085637
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||| |||| | || |||||||||||| |||||  | |||||||||||    
T  15085701 gggttcgaaccccggacacctcacttctccatatttaaaatgtgtgagctccagccactaggcta 15085637  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 27329949 - 27329885
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | |||||||||||    
T  27329949 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggcta 27329885  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 41253766 - 41253702
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||| | |||| |||||| || |||||||||||| |||||  | |||||||||||    
T  41253766 gggttcgaaccccgaacacctcacttttccatatttaaaatgtgtgagctccagccactaggcta 41253702  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 41710636 - 41710700
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    ||||||||| |||||| |||| |||| | ||||||||||||||| |||||  | |||||||||||    
T  41710636 gggttcgaatcccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggcta 41710700  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 51879148 - 51879212
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | |||||||||||    
T  51879148 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggcta 51879212  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 128 - 197
Target Start/End: Complemental strand, 18503496 - 18503427
Alignment:
Q  128 ggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||||||||| || |||  |||| | ||||||||||||||| |||||| ||||||||||||| |||||    
T  18503496 ggttcgaaccccagacaccccacttctccacatttaaaatgtgtgagctttaaccactaggctacttgac 18503427  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 197
Target Start/End: Original strand, 32047142 - 32047212
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttgac 197  Q
    |||||||||||||||| |||| |||| | |||| ||||| |||| |||||  | |||||||||||||||||    
T  32047142 gggttcgaaccccggacacctcacttctccacaattaaattgtgtgagctctagccactaggctatttgac 32047212  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 8241103 - 8241167
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  |||||||||||||    
T  8241103 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctctaaccactaggcta 8241167  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 3741007 - 3741071
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | |||||||||||    
T  3741007 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggcta 3741071  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 127 - 191
Target Start/End: Original strand, 30305852 - 30305916
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||| |||| | ||||||||||||||| |||||  | |||||||||||    
T  30305852 gggttcgaaccccggacacctcacttctccacatttaaaatgtgtgagctccagccactaggcta 30305916  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 36099200 - 36099136
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | ||||||||||||||| |||||  | |||||||||||    
T  36099200 gggttcgaaccccggacaccccacttctccacatttaaaatgtgtgagctccagccactaggcta 36099136  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 127 - 196
Target Start/End: Complemental strand, 47930688 - 47930619
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggctatttga 196  Q
    ||||||||||| ||||||||  |||| |||||| ||||| |||| |||||  ||||||||||||| ||||    
T  47930688 gggttcgaacctcggataccccacttcttcacaattaaattgtgtgagctctaaccactaggctacttga 47930619  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 177
Target Start/End: Original strand, 24983511 - 24983539
Alignment:
Q  149 actttttcacatttaaaatgtgcgagctt 177  Q
    |||||||||||||||||||||||||||||    
T  24983511 actttttcacatttaaaatgtgcgagctt 24983539  T

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Target: scaffold0010 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 236374 - 236311
Alignment:
Q  127 gggttcgaaccccggatacctgactttttcacatttaaaatgtgcgagcttgaaccactaggcta 191  Q
    |||||||||||||||| |||  |||| | |||||| |||||||| |||||| |||||||||||||    
T  236374 gggttcgaaccccggacaccccacttatccacatt-aaaatgtgtgagctttaaccactaggcta 236311  T

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