View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_45 (Length: 212)
Name: NF6665_low_45
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_45 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 16 - 201
Target Start/End: Original strand, 11663593 - 11663778
Alignment:
| Q |
16 |
ttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaaatatat |
115 |
Q |
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||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
11663593 |
ttccctggaataaaaggtgtgaactttatttcaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctgggaattatttttaaaaaatatat |
11663692 |
T |
|
| Q |
116 |
ataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattactgttctt |
201 |
Q |
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|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11663693 |
ataattatcaaaatacccttatatcatatttgataatagagatgtgtcttcagttttctctattatttcaaattattactgttctt |
11663778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 3 - 196
Target Start/End: Complemental strand, 38511339 - 38511146
Alignment:
| Q |
3 |
caggattaaccttttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattattt |
102 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||||||| ||||| ||||| | |||| | |||||||| |
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| T |
38511339 |
caggattaaccttttcccaggaataaaaggtgttaactttatttcaaagaatgttcaaaaaatatgttttgttgataatttgaaatcctggaaattattt |
38511240 |
T |
|
| Q |
103 |
ttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattactg |
196 |
Q |
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||||||| |||||||||| |||||||||||||||||| ||||||| ||| |||| |||||||||||||||||||||||||| |||||||||| |
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| T |
38511239 |
ttaaaaattatatataataatcaaaatacccttatattatatttgataaaagagaaatgtcttcagttttctctattatttcatattattactg |
38511146 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 150; Significance: 2e-79; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 2 - 191
Target Start/End: Complemental strand, 35914104 - 35913915
Alignment:
| Q |
2 |
ccaggattaaccttttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatt |
101 |
Q |
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|||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||| | ||||||| |
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| T |
35914104 |
ccaggattaacctttttctaggaataaaaggtgtgaactttatttcaaggaatgttcaaaaactacgtttggttgaaaatttaagttcctggaaattatt |
35914005 |
T |
|
| Q |
102 |
tttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattat |
191 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
35914004 |
tttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatagagatgtgtcttcaattttctctattatttcaaattat |
35913915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 45356150 - 45355953
Alignment:
| Q |
1 |
cccaggattaaccttttcccaggaataaaa---ggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaat |
97 |
Q |
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|||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||||| |
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| T |
45356150 |
cccaggattaaccttttcccaggaataaaaaaagttgtgaactttattccaaggaatgttcaaaaaatatgtttggttgataatttgaattcctgggaat |
45356051 |
T |
|
| Q |
98 |
tatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattact |
195 |
Q |
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||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
45356050 |
tatttttaaaatatatatataattatcaaaatacccttgtatcatatttggtaaaggagacgtgtctttagttttctctattattttaaattattact |
45355953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 1 - 195
Target Start/End: Complemental strand, 45369891 - 45369694
Alignment:
| Q |
1 |
cccaggattaaccttttcccaggaataaaa---ggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaat |
97 |
Q |
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|
|||||||||||||||||||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||||| |
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| T |
45369891 |
cccaggattaaccttttcccaggaataaaaaaagttgtgaactttattccaaggaatgttcaaaaaatatgtttggttgataatttgaattcctgggaat |
45369792 |
T |
|
| Q |
98 |
tatttttaaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattact |
195 |
Q |
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|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
45369791 |
tatttttaaaatatatatataattatcaaaatacccttgtatcatatttggtaaaggagacgtgtctttagttttctctattattttaaattattact |
45369694 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 195
Target Start/End: Original strand, 17901612 - 17901793
Alignment:
| Q |
16 |
ttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttttaaaaa--atat |
113 |
Q |
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|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||||| ||||||||||||||||| |||| |
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| T |
17901612 |
ttcccaggaataaaaggtgtgaactttattccaaggaatgttcaaaaaatatgtttggttgataatttgaattcctgggaattatttttaaaaaatatat |
17901711 |
T |
|
| Q |
114 |
atataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattact |
195 |
Q |
| |
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|||||||||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||||||| ||||||||| |
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| T |
17901712 |
atataattatcaaaatacccttatatcatattcgataaaagagaagtgtcttcagttttctctattatttcatattattact |
17901793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 4 - 199
Target Start/End: Original strand, 18928111 - 18928304
Alignment:
| Q |
4 |
aggattaaccttttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattatttt |
103 |
Q |
| |
|
||||||||| |||||| ||||||||||||||||| ||||||| |||||| ||| |||| || | ||||||| | ||| | ||| | |||||||||| |
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| T |
18928111 |
aggattaactttttccatggaataaaaggtgtgaattttattccaaggaaagtttaaaatatttatttggttaatggtttgaattcttgtgaattatttt |
18928210 |
T |
|
| Q |
104 |
taaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattactgttc |
199 |
Q |
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|
||||| |||| ||||||||||| |||||||||||| |||| ||||||| ||| ||| | || | ||||||||||||||||||||||||||||| |
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| T |
18928211 |
taaaatatatgtataattatcagaatacccttataccatagttggtaaaagag-tgtattgtctg-gttctctattatttcaaattattactgttc |
18928304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 6 - 151
Target Start/End: Original strand, 13767541 - 13767686
Alignment:
| Q |
6 |
gattaaccttttcccaggaataaaaggtgtgaactttattctaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctcggaattattttta |
105 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
13767541 |
gattaaccttttcccagtaataaaaggtgtgaactttattccaaggaatgttcaaaaaatatgtttggttgaaaatttaagttcctgagaattattttta |
13767640 |
T |
|
| Q |
106 |
aaaaatatatataattatcaaaatacccttatatcatatttggtaa |
151 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
13767641 |
aaaaaaatatataattatcaaaatacccttatatcatatttggtaa |
13767686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 104 - 201
Target Start/End: Original strand, 13767684 - 13767781
Alignment:
| Q |
104 |
taaaaaatatatataattatcaaaatacccttatatcatatttggtaatggagatgtgtcttcagttttctctattatttcaaattattactgttctt |
201 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
13767684 |
taaaaaaaatatataattatcaaaatacccttatatcatatttggtaatagagatgtgtcttcatttttctctattatttcaaattattactgttctt |
13767781 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 123
Target Start/End: Original strand, 41213244 - 41213272
Alignment:
| Q |
95 |
aattatttttaaaaaatatatataattat |
123 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
41213244 |
aattatttttaaaaaatatatataattat |
41213272 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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