View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6665_low_46 (Length: 209)

Name: NF6665_low_46
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6665_low_46
NF6665_low_46
[»] chr4 (3 HSPs)
chr4 (20-193)||(35160374-35160551)
chr4 (23-153)||(35154027-35154157)
chr4 (47-88)||(16298996-16299037)
[»] chr8 (3 HSPs)
chr8 (20-136)||(9693459-9693575)
chr8 (17-136)||(9677715-9677834)
chr8 (47-88)||(30652024-30652065)
[»] chr3 (7 HSPs)
chr3 (21-133)||(46469609-46469721)
chr3 (17-90)||(46478252-46478325)
chr3 (20-91)||(51942063-51942134)
chr3 (20-133)||(4582580-4582693)
chr3 (26-134)||(5155186-5155294)
chr3 (48-120)||(4614272-4614344)
chr3 (68-124)||(46497271-46497327)
[»] chr2 (3 HSPs)
chr2 (20-91)||(20154385-20154456)
chr2 (20-71)||(20143500-20143551)
chr2 (47-88)||(39548117-39548158)
[»] chr1 (1 HSPs)
chr1 (47-88)||(33097480-33097521)
[»] chr6 (1 HSPs)
chr6 (25-88)||(16967951-16968014)


Alignment Details
Target: chr4 (Bit Score: 156; Significance: 5e-83; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 20 - 193
Target Start/End: Complemental strand, 35160551 - 35160374
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggt 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35160551 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggt 35160452  T
Q  120 tgttgcttgattcatcacgctgagtcgccattgttgttgtttttctt---cttcaggagtct-tgtagggcttttgtg 193  Q
    |||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||| |||||||||||||||    
T  35160451 tgttgcttgattcatcacgctgagtcgccattgttgttgtttttcttcttcttcaggagtctctgtagggcttttgtg 35160374  T

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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 153
Target Start/End: Complemental strand, 35154157 - 35154027
Alignment:
Q  23 agcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttgt 122  Q
    ||||| |||||||||||||| |||||||||||||| |||||||||||||| || ||||| ||||||||| | || ||||| ||||||||||| ||||||     
T  35154157 agcactacttggagagacaaaggcgaaaacacgatattcttttctgattcctttgagaaaagatgtttggcgatagtgagggaaactttcgtatggttgc 35154058  T
Q  123 tgcttgattcatcacgctgagtcgccattgt 153  Q
     ||||||||||||| ||| || |||||||||    
T  35154057 agcttgattcatcatgctaagccgccattgt 35154027  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 16299037 - 16298996
Alignment:
Q  47 gaaaacacgatgttcttttctgattctttggagaagagatgt 88  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  16299037 gaaaacacgatgttgttgtctgattctttggagaagagatgt 16298996  T

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Target: chr8 (Bit Score: 65; Significance: 9e-29; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 20 - 136
Target Start/End: Original strand, 9693459 - 9693575
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggt 119  Q
    ||||| |||||||||||||||||||| ||||| ||||  ||||| ||||||||||| ||||||||||||||| | |||||||| |||| ||||| |||||    
T  9693459 ctgagaacaacttggagagacaatggtgaaaagacgacattcttgtctgattcttttgagaagagatgtttggcgatggtgagggaaaatttcgcttggt 9693558  T
Q  120 tgttgcttgattcatca 136  Q
    || ||||||||||||||    
T  9693559 tggtgcttgattcatca 9693575  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 17 - 136
Target Start/End: Original strand, 9677715 - 9677834
Alignment:
Q  17 atactgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgttt 116  Q
    |||||||| |||||||||||||||||||| ||||| |||| ||| || ||||||||||| ||||||||||||||| | |  ||||| ||||||||||  |    
T  9677715 atactgagaacaacttggagagacaatggtgaaaagacgacgttgttgtctgattcttttgagaagagatgtttggcgaccgtgagggaaactttcgcat 9677814  T
Q  117 ggttgttgcttgattcatca 136  Q
    ||||| ||||||||| ||||    
T  9677815 ggttggtgcttgattgatca 9677834  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 30652065 - 30652024
Alignment:
Q  47 gaaaacacgatgttcttttctgattctttggagaagagatgt 88  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  30652065 gaaaacacgatgttgttgtctgattctttggagaagagatgt 30652024  T

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Target: chr3 (Bit Score: 49; Significance: 3e-19; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 21 - 133
Target Start/End: Complemental strand, 46469721 - 46469609
Alignment:
Q  21 tgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggtt 120  Q
    |||||| ||||||||| ||||  ||||||||||| | |||||| ||||||||||| ||||||||||||||| | ||| | || |||||||| ||||||||    
T  46469721 tgagcataacttggagtgacagcggcgaaaacacaacgttcttgtctgattcttttgagaagagatgtttggccatgttaagggaaactttggtttggtt 46469622  T
Q  121 gttgcttgattca 133  Q
    | || ||||||||    
T  46469621 ggtgattgattca 46469609  T

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Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 46478325 - 46478252
Alignment:
Q  17 atactgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgttt 90  Q
    ||||| |||||||||||||| || | ||| |||||||||||||| || ||||||||||||||||||||||||||    
T  46478325 atacttagcacaacttggagtgaaagtggagaaaacacgatgttgttgtctgattctttggagaagagatgttt 46478252  T

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Target: chr3; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 51942134 - 51942063
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg 91  Q
    |||||||||||||| ||||||||||||||||| |||||||| |||||||||| ||| ||||| | |||||||    
T  51942134 ctgagcacaacttgcagagacaatggcgaaaagacgatgttgttttctgattgttttgagaacaaatgtttg 51942063  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 20 - 133
Target Start/End: Original strand, 4582580 - 4582693
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggt 119  Q
    |||||| |||||||||| || | ||| |||||||| |||||||| ||||||||||| |||||||||| |||| | ||  |||| |||||||| |||||||    
T  4582580 ctgagcgcaacttggagcgaaagtggggaaaacacaatgttcttctctgattcttttgagaagagatatttggcgattctgagggaaacttttgtttggt 4582679  T
Q  120 tgttgcttgattca 133  Q
    |  || ||||||||    
T  4582680 tagtgattgattca 4582693  T

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Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 5155294 - 5155186
Alignment:
Q  26 acaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttgttgc 125  Q
    |||||||| ||||||| |||||||||||| |||||||| ||| |||||||  |||| ||||||||| | |||   || ||||| || ||||||||| ||     
T  5155294 acaacttgaagagacagtggcgaaaacacaatgttcttgtctaattctttcaagaacagatgtttggcgatgcgtagggaaacatttgtttggttggtga 5155195  T
Q  126 ttgattcat 134  Q
    |||||||||    
T  5155194 ttgattcat 5155186  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 4614272 - 4614344
Alignment:
Q  48 aaaacacgatgttcttttctgattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggtt 120  Q
    ||||||| |||||||| ||||||||||| ||||| ||||||||| | ||  |||| |||||||| || |||||    
T  4614272 aaaacacaatgttcttctctgattcttttgagaaaagatgtttggcgattctgagggaaacttttgtctggtt 4614344  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 124
Target Start/End: Complemental strand, 46497327 - 46497271
Alignment:
Q  68 gattctttggagaagagatgtttgacaatggtgagagaaactttcgtttggttgttg 124  Q
    |||||||||||||| ||||||||| | |||||||| ||||| ||  |||||||||||    
T  46497327 gattctttggagaaaagatgtttggcgatggtgagggaaacgttgttttggttgttg 46497271  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 91
Target Start/End: Complemental strand, 20154456 - 20154385
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgtttg 91  Q
    |||| |||||||||||| |||| |||||||||||| |||||||| ||||||| |||  |||| |||||||||    
T  20154456 ctgaacacaacttggagtgacactggcgaaaacacaatgttcttgtctgattgtttcaagaacagatgtttg 20154385  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 20143551 - 20143500
Alignment:
Q  20 ctgagcacaacttggagagacaatggcgaaaacacgatgttcttttctgatt 71  Q
    |||||||||| |||||| || | ||||||||||||||||||||| |||||||    
T  20143551 ctgagcacaatttggagtgatagtggcgaaaacacgatgttcttgtctgatt 20143500  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 39548158 - 39548117
Alignment:
Q  47 gaaaacacgatgttcttttctgattctttggagaagagatgt 88  Q
    ||||||| |||||| || ||||||||||||||||||||||||    
T  39548158 gaaaacatgatgttgttgtctgattctttggagaagagatgt 39548117  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 88
Target Start/End: Complemental strand, 33097521 - 33097480
Alignment:
Q  47 gaaaacacgatgttcttttctgattctttggagaagagatgt 88  Q
    |||||||||||||| || ||||||||||||||||||||||||    
T  33097521 gaaaacacgatgttgttgtctgattctttggagaagagatgt 33097480  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 88
Target Start/End: Original strand, 16967951 - 16968014
Alignment:
Q  25 cacaacttggagagacaatggcgaaaacacgatgttcttttctgattctttggagaagagatgt 88  Q
    |||||||||||| || | ||| |||||||||||||| || || |||||||||||||| ||||||    
T  16967951 cacaacttggagtgagagtggtgaaaacacgatgttgttgtccgattctttggagaatagatgt 16968014  T

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