View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6665_low_9 (Length: 412)
Name: NF6665_low_9
Description: NF6665
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6665_low_9 |
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Alignment Details
Target: chr6 (Bit Score: 379; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 398
Target Start/End: Original strand, 30963491 - 30963893
Alignment:
| Q |
1 |
aaaagttagtcacactcattagttattcgcattgactatataagccccattgtacctcttcatataattaccattttcattatcaatactatttgtatat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963491 |
aaaagttagtcacactcattagttattcgcattgactatataagccccattgtacctcttcatataattaccattttcattatcaatactatttgtatat |
30963590 |
T |
|
| Q |
101 |
tacttttatataattttcttttatctatagtttctatcagctgtttagagatcgcaacgaacggaaattactatgtaaaaaagttttaaacatatacctg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963591 |
tacttttatataattttcttttatctatagtttctatcagctgtttagagatcgcaacgaacggaaattactatgtaaaaaagttttaaacatatacctg |
30963690 |
T |
|
| Q |
201 |
taa-----aaaacaccaaggtattgaactacaattaaagagtgcaatcatcattttctcattaaactttgcagatatctttgcagcttcttaccataata |
295 |
Q |
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||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963691 |
taaaaaggaaaacaccaaggtattgaactacagttaaagagtgcaatcatcattttctcattaaactttgcagatatctttgcagcttcttaccataata |
30963790 |
T |
|
| Q |
296 |
gactctgccgaaccctccagatcccagaaaagtgtcaaaatggttagtagcttcttcaagttcggcatggtggaagattttgaaagctgagacatataaa |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30963791 |
gactctgccgaaccctccagatcccagaaaagtgtcaaaatggttagtagcttcttcaagttcggcatggtggaagattttgaaagctgagacatataaa |
30963890 |
T |
|
| Q |
396 |
ttg |
398 |
Q |
| |
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||| |
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| T |
30963891 |
ttg |
30963893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 178; E-Value: 7e-96
Query Start/End: Original strand, 140 - 397
Target Start/End: Original strand, 30933259 - 30933515
Alignment:
| Q |
140 |
gctgtttagagatcgcaacgaacggaaattactatgtaaaaaagttttaaacatatacctgtaaaaaacaccaaggtattgaactacaattaaagagtgc |
239 |
Q |
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|||||||||||| || |||||| |||||||||| |||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||||||||||| |
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| T |
30933259 |
gctgtttagagaacgtaacgaatggaaattactgtgtaaaaaagttttaaacatatgcctgtaaaaaa-agcaaattattgaactacaattaaagagtgc |
30933357 |
T |
|
| Q |
240 |
aatcatcattttctcattaaactttgcagatatctttgcagcttcttaccataatagactctgccgaaccctccagatcccagaaaagtgtcaaaatggt |
339 |
Q |
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| |||||||||| |||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | || |
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| T |
30933358 |
agtcatcattttgtcattaaaatttgcagatacctttgcagcttcttaccatagtagactctgccgaaccctccagatcccaaaaaagtgtcaaacttgt |
30933457 |
T |
|
| Q |
340 |
tagtagcttcttcaagttcggcatggtggaagattttgaaagctgagacatataaatt |
397 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
30933458 |
tagtagcttcttcaagttcggcatggtggaagattttgaaagctgagacgtatgaatt |
30933515 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 1 - 97
Target Start/End: Original strand, 30933147 - 30933244
Alignment:
| Q |
1 |
aaaagttagtcacactcattagttattcgcattgactatataagccccattgtacctcttcatataattaccattttc-attatcaatactatttgta |
97 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||| |||||||||| ||||||| |
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| T |
30933147 |
aaaagttagtcacactcattagttattctcattgactatatatgccttattgcacctcttcatataattaccattttcttttatcaatacaatttgta |
30933244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 72 - 139
Target Start/End: Original strand, 40643 - 40710
Alignment:
| Q |
72 |
cattttcattatcaatactatttgtatattacttttatataattttcttttatctatagtttctatca |
139 |
Q |
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|||| ||||||||||||| |||||||||||||| || ||| |||||| |||||||||||||| |||| |
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| T |
40643 |
cattctcattatcaatacaatttgtatattactctttaatacttttctcttatctatagtttccatca |
40710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 107
Target Start/End: Complemental strand, 40678047 - 40677966
Alignment:
| Q |
26 |
ttcgcattgactatataagccccattgtacctcttcatataattaccattttcattatcaatactatttgtatattactttt |
107 |
Q |
| |
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|||||| || ||||||||| | ||||||||||||| | |||||| | || ||||||||||||| ||||| ||||||||||| |
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| T |
40678047 |
ttcgcactggctatataagtcttattgtacctcttcgtgtaattaacgttctcattatcaatacaatttgcatattactttt |
40677966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 45409490 - 45409451
Alignment:
| Q |
73 |
attttcattatcaatactatttgtatattacttttatata |
112 |
Q |
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||||||||||||||||| ||||||||||||||||| |||| |
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| T |
45409490 |
attttcattatcaatacaatttgtatattacttttctata |
45409451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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