View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6666_high_3 (Length: 343)
Name: NF6666_high_3
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 326
Target Start/End: Original strand, 28169013 - 28169327
Alignment:
| Q |
11 |
cagagagtgatgtccctattacctgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacactcgatctaaccaaattgatgattcaat |
110 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
28169013 |
cagagagtgatgtccctattacatgtatctttaaatccttgaaatgtctaagccaaccatcttctacaaacacttgatctaaccaaattgatgattcaaa |
28169112 |
T |
|
| Q |
111 |
tccataccaagtgaattgtctgtccagcaaacaaatttatgtaagtttcatcatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
210 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28169113 |
tccataccaagtgaattgtct-tccagcaaacaaatttatgtaagtttcaccatagttatccattcaatgaaattcttcatcgcagatgtaatcccttct |
28169211 |
T |
|
| Q |
211 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28169212 |
ttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgcttaatatttgtgt |
28169311 |
T |
|
| Q |
311 |
atcaataattcctttc |
326 |
Q |
| |
|
|| || |||||||||| |
|
|
| T |
28169312 |
ataaagaattcctttc |
28169327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 199 - 310
Target Start/End: Original strand, 8558671 - 8558782
Alignment:
| Q |
199 |
gtaatcccttctttattattctttctttgttcaggttttaaaatttcattaaaatcgccgaacattatcaaaggagatgaggttgacttcttaagttgct |
298 |
Q |
| |
|
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||||||| ||| |
|
|
| T |
8558671 |
gtaatcccttcattattattctttctttgttcgggttttaaaatttcattaaaatcatcgaacattatcaaaggagatgaaattgtcttcttaagctgcg |
8558770 |
T |
|
| Q |
299 |
taatatttgtgt |
310 |
Q |
| |
|
|||||||||||| |
|
|
| T |
8558771 |
taatatttgtgt |
8558782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University