View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6666_low_1 (Length: 572)
Name: NF6666_low_1
Description: NF6666
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6666_low_1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 548; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 55316788 - 55316217
Alignment:
| Q |
1 |
gatacaagtaggaaatgcctgaaattaatgcagtccaaaggccataaattcccaacggttggattgtcatagaatgcaataaatcatggcttgggagctt |
100 |
Q |
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| T |
55316788 |
gatacaggtaggaaatgcctgaaattaatgcagtccaaaggccataaattcccaacggtgggattgtcatagaatgcaataaatcatggcttgggagctt |
55316689 |
T |
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| Q |
101 |
tgtgatctaataatagtcaagggtcaaactttagaacatgaacattattgtgccccagagataatgtgaatgttgagctgacattagaacctaactccct |
200 |
Q |
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| T |
55316688 |
tgtgatctaataatagtcaagggtcaaactttagaacatgaacattattgtgccccagagataatgtgaatgttgagctgacattagaacctaactccct |
55316589 |
T |
|
| Q |
201 |
tgtttcaacacaagcagtttcttacctaacgtgcagttgatgatttttgtttttagaggaactagtacatgcaatggtgttcatgaatctatagtgtgta |
300 |
Q |
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| T |
55316588 |
tgtttcaacacaagcagtttcttacctaacgtgtagttgatgatttttgtttttagaggaactagtacatgcaatggtgttcatgaatctatagtgtgta |
55316489 |
T |
|
| Q |
301 |
ttgttctacgtacagcgcagtatgcatgatgaaaaatataggaaaatttcatgataacatcaagttcaagcagtacaatgtttaaaatgaaattgagtta |
400 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316488 |
ttgttctacgtatagcgcagtatgcatgatgaaaaatataggaaaatttcatgataacatcaagttcaagcagtacaatgtttaaaatgaaattgagtta |
55316389 |
T |
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| Q |
401 |
ttaaccaagatgaagccttgtacttgatgtgagaaacataataatgacattaacctttatgtaatgtaacactctgtaggaaaattagtcaacaaaggag |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55316388 |
ttaaccaagatgaagccttgtacttgatgtgagaaacataataatgacattaacctttatgtaatgtaacactctgtaggaaaattagtcaacaaaggag |
55316289 |
T |
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| Q |
501 |
aaatgctgaagggaattatgtaggcttgtggtatttggtgggtacgaatggcatttttgtgacaactccttc |
572 |
Q |
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||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||| |
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| T |
55316288 |
aaatgctgaagggaattatgtaggcttgtagtatttagtgggtacgaatggcatttttgtgacaactccttc |
55316217 |
T |
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